Mercurial > hg > orthanc

annotate OrthancServer/Sources/ServerJobs/SplitStudyJob.h @ 4921:309fb4f02704

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
fix signature of OrthancPluginIncomingCStoreInstanceFilter
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 23 Feb 2022 11:09:43 +0100
parents 6eff25f70121
children 0ea402b4d901
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
4870
43e613a7756b upgrade to year 2022
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4831
diff changeset
5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
43e613a7756b upgrade to year 2022
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4831
diff changeset
6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 *
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * This program is free software: you can redistribute it and/or
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * modify it under the terms of the GNU General Public License as
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * published by the Free Software Foundation, either version 3 of the
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * License, or (at your option) any later version.
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 *
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * This program is distributed in the hope that it will be useful, but
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * WITHOUT ANY WARRANTY; without even the implied warranty of
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * General Public License for more details.
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 *
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * You should have received a copy of the GNU General Public License
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 **/
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 #pragma once
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24
4045
05b8fd21089c fix path
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
25 #include "../../../OrthancFramework/Sources/DicomFormat/DicomTag.h"
3095
beeeb6096f27 removing dependencies upon ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
26 #include "../DicomInstanceOrigin.h"
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
27 #include "CleaningInstancesJob.h"
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 namespace Orthanc
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 {
3095
beeeb6096f27 removing dependencies upon ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
31 class ServerContext;
beeeb6096f27 removing dependencies upon ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
32
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
33 class SplitStudyJob : public CleaningInstancesJob
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 private:
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 typedef std::map<std::string, std::string> SeriesUidMap;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 typedef std::map<DicomTag, std::string> Replacements;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
40 std::set<DicomTag> allowedTags_;
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 std::string sourceStudy_;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 std::string targetStudy_;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 std::string targetStudyUid_;
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
44 SeriesUidMap seriesUidMap_;
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 DicomInstanceOrigin origin_;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 Replacements replacements_;
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
47 std::set<DicomTag> removals_;
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49 void CheckAllowedTag(const DicomTag& tag) const;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
51 void Setup();
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
52
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
53 // Make setter methods private to prevent incorrect calls
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
54 using SetOfInstancesJob::AddParentResource;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
55 using SetOfInstancesJob::AddInstance;
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 protected:
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
58 virtual bool HandleInstance(const std::string& instance) ORTHANC_OVERRIDE;
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 public:
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 SplitStudyJob(ServerContext& context,
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 const std::string& sourceStudy);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64 SplitStudyJob(ServerContext& context,
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 const Json::Value& serialized);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
67 const std::string& GetSourceStudy() const
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
68 {
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
69 return sourceStudy_;
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
70 }
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71
2847
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
72 const std::string& GetTargetStudy() const
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
73 {
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
74 return targetStudy_;
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
75 }
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
76
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
77 const std::string& GetTargetStudyUid() const
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
78 {
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
79 return targetStudyUid_;
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
80 }
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
81
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82 void AddSourceSeries(const std::string& series);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
84 void AddSourceInstance(const std::string& instance); // New in Orthanc 1.9.4
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
85
2847
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
86 bool LookupTargetSeriesUid(std::string& uid,
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
87 const std::string& series) const;
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
88
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89 void Replace(const DicomTag& tag,
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90 const std::string& value);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91
2847
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
92 bool LookupReplacement(std::string& value,
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
93 const DicomTag& tag) const;
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
94
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
95 void Remove(const DicomTag& tag);
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
96
2847
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
97 bool IsRemoved(const DicomTag& tag) const
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
98 {
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
99 return removals_.find(tag) != removals_.end();
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
100 }
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
101
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
102 void SetOrigin(const DicomInstanceOrigin& origin);
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
103
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
104 void SetOrigin(const RestApiCall& call);
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
105
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
106 const DicomInstanceOrigin& GetOrigin() const
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
107 {
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
108 return origin_;
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
109 }
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
110
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
111 virtual void Stop(JobStopReason reason) ORTHANC_OVERRIDE
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
115 virtual void GetJobType(std::string& target) ORTHANC_OVERRIDE
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116 {
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
117 target = "SplitStudy";
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
118 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
119
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
120 virtual void GetPublicContent(Json::Value& value) ORTHANC_OVERRIDE;
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
121
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
122 virtual bool Serialize(Json::Value& target) ORTHANC_OVERRIDE;
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
123 };
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
124 }