annotate OrthancServer/OrthancRestApi.cpp @ 407:2d269089078f

reintegration of lua scripting into mainline
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 02 May 2013 16:49:28 +0200
parents c3e9b74aab7a
children 47d63c941902
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2013 Medical Physics Department, CHU of Liege,
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4 * Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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32
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33 #include "OrthancRestApi.h"
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34
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35 #include "../Core/HttpServer/FilesystemHttpSender.h"
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36 #include "../Core/Uuid.h"
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37 #include "../Core/Compression/HierarchicalZipWriter.h"
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38 #include "DicomProtocol/DicomUserConnection.h"
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39 #include "FromDcmtkBridge.h"
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40 #include "OrthancInitialization.h"
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41 #include "ServerToolbox.h"
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42
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43 #include <dcmtk/dcmdata/dcistrmb.h>
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44 #include <dcmtk/dcmdata/dcfilefo.h>
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45 #include <boost/lexical_cast.hpp>
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46 #include <glog/logging.h>
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48
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49 #define RETRIEVE_CONTEXT(call) \
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50 OrthancRestApi& contextApi = \
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51 dynamic_cast<OrthancRestApi&>(call.GetContext()); \
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52 ServerContext& context = contextApi.GetContext()
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53
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54 #define RETRIEVE_MODALITIES(call) \
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55 const OrthancRestApi::Modalities& modalities = \
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56 dynamic_cast<OrthancRestApi&>(call.GetContext()).GetModalities();
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57
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60 namespace Orthanc
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61 {
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62 // TODO IMPROVE MULTITHREADING
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63 // Every call to "ParsedDicomFile" must lock this mutex!!!
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64 static boost::mutex cacheMutex_;
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65
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66
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67 // DICOM SCU ----------------------------------------------------------------
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68
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69 static void ConnectToModality(DicomUserConnection& connection,
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70 const std::string& name)
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71 {
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72 std::string aet, address;
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73 int port;
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74 GetDicomModality(name, aet, address, port);
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75 connection.SetLocalApplicationEntityTitle(GetGlobalStringParameter("DicomAet", "ORTHANC"));
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76 connection.SetDistantApplicationEntityTitle(aet);
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77 connection.SetDistantHost(address);
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78 connection.SetDistantPort(port);
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79 connection.Open();
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80 }
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81
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82 static bool MergeQueryAndTemplate(DicomMap& result,
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83 const std::string& postData)
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84 {
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85 Json::Value query;
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86 Json::Reader reader;
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87
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88 if (!reader.parse(postData, query) ||
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89 query.type() != Json::objectValue)
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90 {
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91 return false;
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92 }
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93
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94 Json::Value::Members members = query.getMemberNames();
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95 for (size_t i = 0; i < members.size(); i++)
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96 {
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97 DicomTag t = FromDcmtkBridge::ParseTag(members[i]);
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98 result.SetValue(t, query[members[i]].asString());
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99 }
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100
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101 return true;
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102 }
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103
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104 static void DicomFindPatient(RestApi::PostCall& call)
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105 {
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106 DicomMap m;
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107 DicomMap::SetupFindPatientTemplate(m);
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108 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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109 {
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110 return;
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111 }
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112
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113 DicomUserConnection connection;
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114 ConnectToModality(connection, call.GetUriComponent("id", ""));
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115
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116 DicomFindAnswers answers;
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117 connection.FindPatient(answers, m);
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118
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119 Json::Value result;
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120 answers.ToJson(result);
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121 call.GetOutput().AnswerJson(result);
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122 }
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123
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124 static void DicomFindStudy(RestApi::PostCall& call)
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125 {
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126 DicomMap m;
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127 DicomMap::SetupFindStudyTemplate(m);
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128 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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129 {
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130 return;
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131 }
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132
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133 if (m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 &&
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134 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2)
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135 {
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136 return;
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137 }
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138
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139 DicomUserConnection connection;
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140 ConnectToModality(connection, call.GetUriComponent("id", ""));
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141
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142 DicomFindAnswers answers;
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143 connection.FindStudy(answers, m);
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144
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145 Json::Value result;
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146 answers.ToJson(result);
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147 call.GetOutput().AnswerJson(result);
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148 }
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149
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150 static void DicomFindSeries(RestApi::PostCall& call)
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151 {
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152 DicomMap m;
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153 DicomMap::SetupFindSeriesTemplate(m);
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154 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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155 {
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156 return;
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157 }
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158
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159 if ((m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 &&
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160 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) ||
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161 m.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString().size() <= 2)
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162 {
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163 return;
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164 }
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165
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166 DicomUserConnection connection;
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167 ConnectToModality(connection, call.GetUriComponent("id", ""));
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168
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169 DicomFindAnswers answers;
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170 connection.FindSeries(answers, m);
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171
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172 Json::Value result;
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173 answers.ToJson(result);
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174 call.GetOutput().AnswerJson(result);
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175 }
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176
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177 static void DicomFind(RestApi::PostCall& call)
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178 {
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179 DicomMap m;
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180 DicomMap::SetupFindPatientTemplate(m);
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181 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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182 {
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183 return;
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184 }
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185
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186 DicomUserConnection connection;
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187 ConnectToModality(connection, call.GetUriComponent("id", ""));
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188
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189 DicomFindAnswers patients;
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190 connection.FindPatient(patients, m);
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191
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192 // Loop over the found patients
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193 Json::Value result = Json::arrayValue;
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194 for (size_t i = 0; i < patients.GetSize(); i++)
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195 {
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196 Json::Value patient(Json::objectValue);
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197 FromDcmtkBridge::ToJson(patient, patients.GetAnswer(i));
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198
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199 DicomMap::SetupFindStudyTemplate(m);
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200 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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201 {
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202 return;
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203 }
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204 m.CopyTagIfExists(patients.GetAnswer(i), DICOM_TAG_PATIENT_ID);
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diff changeset
205
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diff changeset
206 DicomFindAnswers studies;
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diff changeset
207 connection.FindStudy(studies, m);
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diff changeset
208
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diff changeset
209 patient["Studies"] = Json::arrayValue;
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210
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211 // Loop over the found studies
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212 for (size_t j = 0; j < studies.GetSize(); j++)
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diff changeset
213 {
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214 Json::Value study(Json::objectValue);
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diff changeset
215 FromDcmtkBridge::ToJson(study, studies.GetAnswer(j));
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diff changeset
216
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diff changeset
217 DicomMap::SetupFindSeriesTemplate(m);
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diff changeset
218 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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diff changeset
219 {
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220 return;
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221 }
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222 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_PATIENT_ID);
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diff changeset
223 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_STUDY_INSTANCE_UID);
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diff changeset
224
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diff changeset
225 DicomFindAnswers series;
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diff changeset
226 connection.FindSeries(series, m);
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diff changeset
227
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diff changeset
228 // Loop over the found series
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diff changeset
229 study["Series"] = Json::arrayValue;
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diff changeset
230 for (size_t k = 0; k < series.GetSize(); k++)
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diff changeset
231 {
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diff changeset
232 Json::Value series2(Json::objectValue);
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diff changeset
233 FromDcmtkBridge::ToJson(series2, series.GetAnswer(k));
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diff changeset
234 study["Series"].append(series2);
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diff changeset
235 }
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diff changeset
236
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diff changeset
237 patient["Studies"].append(study);
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diff changeset
238 }
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diff changeset
239
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diff changeset
240 result.append(patient);
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diff changeset
241 }
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diff changeset
242
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diff changeset
243 call.GetOutput().AnswerJson(result);
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diff changeset
244 }
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diff changeset
245
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diff changeset
246
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diff changeset
247 static void DicomStore(RestApi::PostCall& call)
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diff changeset
248 {
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diff changeset
249 RETRIEVE_CONTEXT(call);
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diff changeset
250
231
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diff changeset
251 std::string remote = call.GetUriComponent("id", "");
402
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252 std::string stripped = Toolbox::StripSpaces(call.GetPostBody());
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diff changeset
253
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diff changeset
254 Json::Value request;
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diff changeset
255 if (Toolbox::IsSHA1(stripped))
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diff changeset
256 {
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diff changeset
257 // This is for compatibility with Orthanc <= 0.5.1.
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258 request = stripped;
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259 }
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260 else if (!call.ParseJsonRequest(request))
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diff changeset
261 {
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diff changeset
262 // Bad JSON request
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263 return;
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diff changeset
264 }
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265
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266 std::list<std::string> instances;
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267 if (request.isString())
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diff changeset
268 {
403
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diff changeset
269 LOG(INFO) << "Sending resource " << request.asString() << " to modality " << remote;
402
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diff changeset
270 context.GetIndex().LogExportedResource(request.asString(), remote);
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diff changeset
271 context.GetIndex().GetChildInstances(instances, request.asString());
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272 }
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273 else if (request.isArray())
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diff changeset
274 {
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diff changeset
275 for (Json::Value::ArrayIndex i = 0; i < request.size(); i++)
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diff changeset
276 {
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diff changeset
277 if (!request[i].isString())
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diff changeset
278 {
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diff changeset
279 return;
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diff changeset
280 }
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diff changeset
281
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diff changeset
282 std::string stripped = Toolbox::StripSpaces(request[i].asString());
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283 if (!Toolbox::IsSHA1(stripped))
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diff changeset
284 {
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diff changeset
285 return;
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diff changeset
286 }
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diff changeset
287
403
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288 LOG(INFO) << "Sending resource " << stripped << " to modality " << remote;
402
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diff changeset
289 context.GetIndex().LogExportedResource(stripped, remote);
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290
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diff changeset
291 std::list<std::string> tmp;
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292 context.GetIndex().GetChildInstances(tmp, stripped);
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diff changeset
293 instances.merge(tmp);
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diff changeset
294 assert(tmp.size() == 0);
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295 }
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diff changeset
296 }
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diff changeset
297 else
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diff changeset
298 {
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diff changeset
299 // Neither a string, nor a list of strings. Bad request.
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300 return;
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diff changeset
301 }
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diff changeset
302
227
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diff changeset
303 DicomUserConnection connection;
231
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diff changeset
304 ConnectToModality(connection, remote);
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parents: 230
diff changeset
305
402
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diff changeset
306 for (std::list<std::string>::const_iterator
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diff changeset
307 it = instances.begin(); it != instances.end(); it++)
227
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diff changeset
308 {
402
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diff changeset
309 std::string dicom;
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diff changeset
310 context.ReadFile(dicom, *it, FileContentType_Dicom);
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diff changeset
311 connection.Store(dicom);
227
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diff changeset
312 }
231
8098448bd827 export log
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diff changeset
313
402
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diff changeset
314 call.GetOutput().AnswerBuffer("{}", "application/json");
227
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diff changeset
315 }
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diff changeset
316
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diff changeset
317
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diff changeset
318
210
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319 // System information -------------------------------------------------------
211
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diff changeset
320
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diff changeset
321 static void ServeRoot(RestApi::GetCall& call)
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diff changeset
322 {
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diff changeset
323 call.GetOutput().Redirect("app/explorer.html");
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diff changeset
324 }
210
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325
96b7918a6a18 start of the refactoring of the Orthanc REST API
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diff changeset
326 static void GetSystemInformation(RestApi::GetCall& call)
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diff changeset
327 {
238
e4148b0ab1d0 statistics URI
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diff changeset
328 Json::Value result = Json::objectValue;
210
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parents:
diff changeset
329
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diff changeset
330 result["Version"] = ORTHANC_VERSION;
96b7918a6a18 start of the refactoring of the Orthanc REST API
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diff changeset
331 result["Name"] = GetGlobalStringParameter("Name", "");
238
e4148b0ab1d0 statistics URI
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diff changeset
332
e4148b0ab1d0 statistics URI
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diff changeset
333 call.GetOutput().AnswerJson(result);
e4148b0ab1d0 statistics URI
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diff changeset
334 }
227
209ca3f6db62 dicom-scu from rest
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diff changeset
335
238
e4148b0ab1d0 statistics URI
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diff changeset
336 static void GetStatistics(RestApi::GetCall& call)
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diff changeset
337 {
e4148b0ab1d0 statistics URI
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diff changeset
338 RETRIEVE_CONTEXT(call);
e4148b0ab1d0 statistics URI
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diff changeset
339 Json::Value result = Json::objectValue;
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diff changeset
340 context.GetIndex().ComputeStatistics(result);
210
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341 call.GetOutput().AnswerJson(result);
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342 }
96b7918a6a18 start of the refactoring of the Orthanc REST API
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diff changeset
343
342
a58a8be26aff generation of random uid in the rest api
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diff changeset
344 static void GenerateUid(RestApi::GetCall& call)
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diff changeset
345 {
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diff changeset
346 std::string level = call.GetArgument("level", "");
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diff changeset
347 if (level == "patient")
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diff changeset
348 {
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diff changeset
349 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Patient), "text/plain");
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parents: 321
diff changeset
350 }
a58a8be26aff generation of random uid in the rest api
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parents: 321
diff changeset
351 else if (level == "study")
a58a8be26aff generation of random uid in the rest api
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parents: 321
diff changeset
352 {
a58a8be26aff generation of random uid in the rest api
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parents: 321
diff changeset
353 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Study), "text/plain");
a58a8be26aff generation of random uid in the rest api
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parents: 321
diff changeset
354 }
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parents: 321
diff changeset
355 else if (level == "series")
a58a8be26aff generation of random uid in the rest api
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parents: 321
diff changeset
356 {
a58a8be26aff generation of random uid in the rest api
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parents: 321
diff changeset
357 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Series), "text/plain");
a58a8be26aff generation of random uid in the rest api
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parents: 321
diff changeset
358 }
a58a8be26aff generation of random uid in the rest api
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parents: 321
diff changeset
359 else if (level == "instance")
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
360 {
a58a8be26aff generation of random uid in the rest api
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parents: 321
diff changeset
361 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Instance), "text/plain");
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
362 }
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
363 }
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
364
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
365
211
b7aea293b965 list of resources
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diff changeset
366 // List all the patients, studies, series or instances ----------------------
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parents: 210
diff changeset
367
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diff changeset
368 template <enum ResourceType resourceType>
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diff changeset
369 static void ListResources(RestApi::GetCall& call)
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parents: 210
diff changeset
370 {
b7aea293b965 list of resources
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parents: 210
diff changeset
371 RETRIEVE_CONTEXT(call);
b7aea293b965 list of resources
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parents: 210
diff changeset
372
b7aea293b965 list of resources
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parents: 210
diff changeset
373 Json::Value result;
b7aea293b965 list of resources
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parents: 210
diff changeset
374 context.GetIndex().GetAllUuids(result, resourceType);
b7aea293b965 list of resources
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parents: 210
diff changeset
375 call.GetOutput().AnswerJson(result);
b7aea293b965 list of resources
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parents: 210
diff changeset
376 }
b7aea293b965 list of resources
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parents: 210
diff changeset
377
212
f276b175dcaf delete resources
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parents: 211
diff changeset
378 template <enum ResourceType resourceType>
f276b175dcaf delete resources
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parents: 211
diff changeset
379 static void GetSingleResource(RestApi::GetCall& call)
f276b175dcaf delete resources
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parents: 211
diff changeset
380 {
f276b175dcaf delete resources
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diff changeset
381 RETRIEVE_CONTEXT(call);
f276b175dcaf delete resources
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parents: 211
diff changeset
382
f276b175dcaf delete resources
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parents: 211
diff changeset
383 Json::Value result;
f276b175dcaf delete resources
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parents: 211
diff changeset
384 if (context.GetIndex().LookupResource(result, call.GetUriComponent("id", ""), resourceType))
f276b175dcaf delete resources
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parents: 211
diff changeset
385 {
f276b175dcaf delete resources
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parents: 211
diff changeset
386 call.GetOutput().AnswerJson(result);
f276b175dcaf delete resources
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parents: 211
diff changeset
387 }
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
388 }
f276b175dcaf delete resources
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parents: 211
diff changeset
389
f276b175dcaf delete resources
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parents: 211
diff changeset
390 template <enum ResourceType resourceType>
f276b175dcaf delete resources
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parents: 211
diff changeset
391 static void DeleteSingleResource(RestApi::DeleteCall& call)
f276b175dcaf delete resources
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parents: 211
diff changeset
392 {
f276b175dcaf delete resources
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parents: 211
diff changeset
393 RETRIEVE_CONTEXT(call);
f276b175dcaf delete resources
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parents: 211
diff changeset
394
f276b175dcaf delete resources
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parents: 211
diff changeset
395 Json::Value result;
f276b175dcaf delete resources
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parents: 211
diff changeset
396 if (context.GetIndex().DeleteResource(result, call.GetUriComponent("id", ""), resourceType))
f276b175dcaf delete resources
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parents: 211
diff changeset
397 {
f276b175dcaf delete resources
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parents: 211
diff changeset
398 call.GetOutput().AnswerJson(result);
f276b175dcaf delete resources
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parents: 211
diff changeset
399 }
f276b175dcaf delete resources
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parents: 211
diff changeset
400 }
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
401
211
b7aea293b965 list of resources
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parents: 210
diff changeset
402
248
2442033911d6 creation of zip files
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parents: 238
diff changeset
403 // Download of ZIP files ----------------------------------------------------
2442033911d6 creation of zip files
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parents: 238
diff changeset
404
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
405
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
406 static std::string GetDirectoryNameInArchive(const Json::Value& resource,
f23318b11b39 creation of zip files
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parents: 249
diff changeset
407 ResourceType resourceType)
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
408 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
409 switch (resourceType)
f23318b11b39 creation of zip files
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parents: 249
diff changeset
410 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
411 case ResourceType_Patient:
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
412 {
f23318b11b39 creation of zip files
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parents: 249
diff changeset
413 std::string p = resource["MainDicomTags"]["PatientID"].asString();
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
414 std::string n = resource["MainDicomTags"]["PatientName"].asString();
f23318b11b39 creation of zip files
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parents: 249
diff changeset
415 return p + " " + n;
f23318b11b39 creation of zip files
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parents: 249
diff changeset
416 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
417
f23318b11b39 creation of zip files
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parents: 249
diff changeset
418 case ResourceType_Study:
253
15fcd925b05b improvement
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parents: 250
diff changeset
419 {
250
f23318b11b39 creation of zip files
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diff changeset
420 return resource["MainDicomTags"]["StudyDescription"].asString();
253
15fcd925b05b improvement
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parents: 250
diff changeset
421 }
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
422
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
423 case ResourceType_Series:
253
15fcd925b05b improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 250
diff changeset
424 {
15fcd925b05b improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 250
diff changeset
425 std::string d = resource["MainDicomTags"]["SeriesDescription"].asString();
15fcd925b05b improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 250
diff changeset
426 std::string m = resource["MainDicomTags"]["Modality"].asString();
15fcd925b05b improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 250
diff changeset
427 return m + " " + d;
15fcd925b05b improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 250
diff changeset
428 }
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
429
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
430 default:
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
431 throw OrthancException(ErrorCode_InternalError);
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
432 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
433 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
434
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
435 static bool CreateRootDirectoryInArchive(HierarchicalZipWriter& writer,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
436 ServerContext& context,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
437 const Json::Value& resource,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
438 ResourceType resourceType)
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
439 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
440 if (resourceType == ResourceType_Patient)
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
441 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
442 return true;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
443 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
444
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
445 ResourceType parentType = GetParentResourceType(resourceType);
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
446 Json::Value parent;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
447
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
448 switch (resourceType)
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
449 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
450 case ResourceType_Study:
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
451 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
452 if (!context.GetIndex().LookupResource(parent, resource["ParentPatient"].asString(), parentType))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
453 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
454 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
455 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
456
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
457 break;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
458 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
459
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
460 case ResourceType_Series:
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
461 if (!context.GetIndex().LookupResource(parent, resource["ParentStudy"].asString(), parentType) ||
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
462 !CreateRootDirectoryInArchive(writer, context, parent, parentType))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
463 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
464 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
465 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
466 break;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
467
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
468 default:
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
469 throw OrthancException(ErrorCode_NotImplemented);
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
470 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
471
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
472 writer.OpenDirectory(GetDirectoryNameInArchive(parent, parentType).c_str());
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
473 return true;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
474 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
475
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
476 static bool ArchiveInstance(HierarchicalZipWriter& writer,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
477 ServerContext& context,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
478 const std::string& instancePublicId)
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
479 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
480 Json::Value instance;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
481 if (!context.GetIndex().LookupResource(instance, instancePublicId, ResourceType_Instance))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
482 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
483 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
484 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
485
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
486 std::string filename = instance["MainDicomTags"]["SOPInstanceUID"].asString() + ".dcm";
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
487 writer.OpenFile(filename.c_str());
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
488
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
489 std::string dicom;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
490 context.ReadFile(dicom, instancePublicId, FileContentType_Dicom);
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
491 writer.Write(dicom);
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
492
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
493 return true;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
494 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
495
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
496 static bool ArchiveInternal(HierarchicalZipWriter& writer,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
497 ServerContext& context,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
498 const std::string& publicId,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
499 ResourceType resourceType,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
500 bool isFirstLevel)
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
501 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
502 Json::Value resource;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
503 if (!context.GetIndex().LookupResource(resource, publicId, resourceType))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
504 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
505 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
506 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
507
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
508 if (isFirstLevel &&
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
509 !CreateRootDirectoryInArchive(writer, context, resource, resourceType))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
510 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
511 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
512 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
513
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
514 writer.OpenDirectory(GetDirectoryNameInArchive(resource, resourceType).c_str());
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
515
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
516 switch (resourceType)
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
517 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
518 case ResourceType_Patient:
299
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
519 for (Json::Value::ArrayIndex i = 0; i < resource["Studies"].size(); i++)
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
520 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
521 std::string studyId = resource["Studies"][i].asString();
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
522 if (!ArchiveInternal(writer, context, studyId, ResourceType_Study, false))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
523 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
524 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
525 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
526 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
527 break;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
528
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
529 case ResourceType_Study:
299
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
530 for (Json::Value::ArrayIndex i = 0; i < resource["Series"].size(); i++)
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
531 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
532 std::string seriesId = resource["Series"][i].asString();
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
533 if (!ArchiveInternal(writer, context, seriesId, ResourceType_Series, false))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
534 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
535 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
536 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
537 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
538 break;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
539
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
540 case ResourceType_Series:
299
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
541 for (Json::Value::ArrayIndex i = 0; i < resource["Instances"].size(); i++)
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
542 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
543 if (!ArchiveInstance(writer, context, resource["Instances"][i].asString()))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
544 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
545 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
546 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
547 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
548 break;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
549
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
550 default:
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
551 throw OrthancException(ErrorCode_InternalError);
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
552 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
553
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
554 writer.CloseDirectory();
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
555 return true;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
556 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
557
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
558 template <enum ResourceType resourceType>
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
559 static void GetArchive(RestApi::GetCall& call)
248
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
560 {
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
561 RETRIEVE_CONTEXT(call);
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
562
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
563 // Create a RAII for the temporary file to manage the ZIP file
248
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
564 Toolbox::TemporaryFile tmp;
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
565 std::string id = call.GetUriComponent("id", "");
248
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
566
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
567 {
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
568 // Create a ZIP writer
248
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
569 HierarchicalZipWriter writer(tmp.GetPath().c_str());
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
570
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
571 // Store the requested resource into the ZIP
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
572 if (!ArchiveInternal(writer, context, id, resourceType, true))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
573 {
f23318b11b39 creation of zip files
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diff changeset
574 return;
248
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575 }
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576 }
250
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577
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diff changeset
578 // Prepare the sending of the ZIP file
248
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diff changeset
579 FilesystemHttpSender sender(tmp.GetPath().c_str());
250
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diff changeset
580 sender.SetContentType("application/zip");
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diff changeset
581 sender.SetDownloadFilename(id + ".zip");
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diff changeset
582
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diff changeset
583 // Send the ZIP
248
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diff changeset
584 call.GetOutput().AnswerFile(sender);
250
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diff changeset
585
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diff changeset
586 // The temporary file is automatically removed thanks to the RAII
248
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diff changeset
587 }
2442033911d6 creation of zip files
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diff changeset
588
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diff changeset
589
210
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590 // Changes API --------------------------------------------------------------
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591
231
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592 static void GetSinceAndLimit(int64_t& since,
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593 unsigned int& limit,
237
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diff changeset
594 bool& last,
231
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diff changeset
595 const RestApi::GetCall& call)
210
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parents:
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596 {
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597 static const unsigned int MAX_RESULTS = 100;
237
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598
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599 if (call.HasArgument("last"))
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diff changeset
600 {
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diff changeset
601 last = true;
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diff changeset
602 return;
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diff changeset
603 }
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diff changeset
604
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diff changeset
605 last = false;
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diff changeset
606
210
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parents:
diff changeset
607 try
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
608 {
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
609 since = boost::lexical_cast<int64_t>(call.GetArgument("since", "0"));
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
610 limit = boost::lexical_cast<unsigned int>(call.GetArgument("limit", "0"));
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
611 }
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parents:
diff changeset
612 catch (boost::bad_lexical_cast)
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
613 {
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
614 return;
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
615 }
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
616
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
617 if (limit == 0 || limit > MAX_RESULTS)
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
618 {
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
619 limit = MAX_RESULTS;
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parents:
diff changeset
620 }
231
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diff changeset
621 }
8098448bd827 export log
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diff changeset
622
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diff changeset
623 static void GetChanges(RestApi::GetCall& call)
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624 {
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diff changeset
625 RETRIEVE_CONTEXT(call);
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diff changeset
626
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diff changeset
627 //std::string filter = GetArgument(getArguments, "filter", "");
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diff changeset
628 int64_t since;
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diff changeset
629 unsigned int limit;
237
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diff changeset
630 bool last;
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diff changeset
631 GetSinceAndLimit(since, limit, last, call);
210
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632
96b7918a6a18 start of the refactoring of the Orthanc REST API
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633 Json::Value result;
237
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634 if ((!last && context.GetIndex().GetChanges(result, since, limit)) ||
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diff changeset
635 ( last && context.GetIndex().GetLastChange(result)))
210
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parents:
diff changeset
636 {
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parents:
diff changeset
637 call.GetOutput().AnswerJson(result);
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parents:
diff changeset
638 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
639 }
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
640
96b7918a6a18 start of the refactoring of the Orthanc REST API
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diff changeset
641
231
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diff changeset
642 static void GetExports(RestApi::GetCall& call)
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diff changeset
643 {
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diff changeset
644 RETRIEVE_CONTEXT(call);
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diff changeset
645
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diff changeset
646 int64_t since;
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diff changeset
647 unsigned int limit;
237
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diff changeset
648 bool last;
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diff changeset
649 GetSinceAndLimit(since, limit, last, call);
231
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diff changeset
650
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diff changeset
651 Json::Value result;
237
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diff changeset
652 if ((!last && context.GetIndex().GetExportedResources(result, since, limit)) ||
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diff changeset
653 ( last && context.GetIndex().GetLastExportedResource(result)))
231
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diff changeset
654 {
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diff changeset
655 call.GetOutput().AnswerJson(result);
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656 }
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657 }
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diff changeset
658
210
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diff changeset
659
272
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660 // Get information about a single patient -----------------------------------
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661
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diff changeset
662 static void IsProtectedPatient(RestApi::GetCall& call)
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663 {
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diff changeset
664 RETRIEVE_CONTEXT(call);
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diff changeset
665 std::string publicId = call.GetUriComponent("id", "");
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diff changeset
666 bool isProtected = context.GetIndex().IsProtectedPatient(publicId);
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667 call.GetOutput().AnswerBuffer(isProtected ? "1" : "0", "text/plain");
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diff changeset
668 }
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diff changeset
669
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diff changeset
670
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diff changeset
671 static void SetPatientProtection(RestApi::PutCall& call)
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672 {
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diff changeset
673 RETRIEVE_CONTEXT(call);
337c506461d2 protection from rest api
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diff changeset
674 std::string publicId = call.GetUriComponent("id", "");
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diff changeset
675 std::string s = Toolbox::StripSpaces(call.GetPutBody());
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diff changeset
676
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diff changeset
677 if (s == "0")
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diff changeset
678 {
337c506461d2 protection from rest api
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diff changeset
679 context.GetIndex().SetProtectedPatient(publicId, false);
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diff changeset
680 call.GetOutput().AnswerBuffer("", "text/plain");
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diff changeset
681 }
337c506461d2 protection from rest api
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diff changeset
682 else if (s == "1")
337c506461d2 protection from rest api
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diff changeset
683 {
337c506461d2 protection from rest api
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diff changeset
684 context.GetIndex().SetProtectedPatient(publicId, true);
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diff changeset
685 call.GetOutput().AnswerBuffer("", "text/plain");
337c506461d2 protection from rest api
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diff changeset
686 }
337c506461d2 protection from rest api
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diff changeset
687 else
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diff changeset
688 {
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diff changeset
689 // Bad request
337c506461d2 protection from rest api
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diff changeset
690 }
337c506461d2 protection from rest api
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diff changeset
691 }
337c506461d2 protection from rest api
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parents: 253
diff changeset
692
337c506461d2 protection from rest api
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diff changeset
693
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
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diff changeset
694 // Get information about a single instance ----------------------------------
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diff changeset
695
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diff changeset
696 static void GetInstanceFile(RestApi::GetCall& call)
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diff changeset
697 {
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diff changeset
698 RETRIEVE_CONTEXT(call);
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diff changeset
699
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diff changeset
700 std::string publicId = call.GetUriComponent("id", "");
233
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diff changeset
701 context.AnswerFile(call.GetOutput(), publicId, FileContentType_Dicom);
213
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diff changeset
702 }
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
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diff changeset
703
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
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parents: 212
diff changeset
704
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diff changeset
705 template <bool simplify>
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diff changeset
706 static void GetInstanceTags(RestApi::GetCall& call)
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diff changeset
707 {
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diff changeset
708 RETRIEVE_CONTEXT(call);
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
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parents: 212
diff changeset
709
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
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diff changeset
710 std::string publicId = call.GetUriComponent("id", "");
226
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diff changeset
711
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diff changeset
712 Json::Value full;
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diff changeset
713 context.ReadJson(full, publicId);
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
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diff changeset
714
226
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parents: 225
diff changeset
715 if (simplify)
8a26a8e85edf refactoring to read files
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diff changeset
716 {
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diff changeset
717 Json::Value simplified;
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
718 SimplifyTags(simplified, full);
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
719 call.GetOutput().AnswerJson(simplified);
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
720 }
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
721 else
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
722 {
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
723 call.GetOutput().AnswerJson(full);
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
724 }
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
725 }
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
726
214
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
727
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
728 static void ListFrames(RestApi::GetCall& call)
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
729 {
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
730 RETRIEVE_CONTEXT(call);
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
731
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
732 Json::Value instance;
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
733 if (context.GetIndex().LookupResource(instance, call.GetUriComponent("id", ""), ResourceType_Instance))
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
734 {
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
735 unsigned int numberOfFrames = 1;
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
736
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
737 try
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
738 {
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
739 Json::Value tmp = instance["MainDicomTags"]["NumberOfFrames"];
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
740 numberOfFrames = boost::lexical_cast<unsigned int>(tmp.asString());
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
741 }
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
742 catch (...)
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
743 {
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
744 }
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
745
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
746 Json::Value result = Json::arrayValue;
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
747 for (unsigned int i = 0; i < numberOfFrames; i++)
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
748 {
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
749 result.append(i);
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
750 }
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
751
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
752 call.GetOutput().AnswerJson(result);
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
753 }
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
754 }
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
755
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
756
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
757 template <enum ImageExtractionMode mode>
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
758 static void GetImage(RestApi::GetCall& call)
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
759 {
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
760 RETRIEVE_CONTEXT(call);
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
761
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
762 std::string frameId = call.GetUriComponent("frame", "0");
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
763
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
764 unsigned int frame;
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
765 try
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
766 {
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
767 frame = boost::lexical_cast<unsigned int>(frameId);
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
768 }
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
769 catch (boost::bad_lexical_cast)
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
770 {
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
771 return;
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
772 }
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
773
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
774 std::string publicId = call.GetUriComponent("id", "");
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
775 std::string dicomContent, png;
233
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 232
diff changeset
776 context.ReadFile(dicomContent, publicId, FileContentType_Dicom);
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
777
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
778 try
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
779 {
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
780 FromDcmtkBridge::ExtractPngImage(png, dicomContent, frame, mode);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
781 call.GetOutput().AnswerBuffer(png, "image/png");
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
782 }
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
783 catch (OrthancException& e)
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
784 {
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
785 if (e.GetErrorCode() == ErrorCode_ParameterOutOfRange)
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
786 {
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
787 // The frame number is out of the range for this DICOM
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
788 // instance, the resource is not existent
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
789 }
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
790 else
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
791 {
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
792 std::string root = "";
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
793 for (size_t i = 1; i < call.GetFullUri().size(); i++)
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
794 {
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
795 root += "../";
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
796 }
218
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 217
diff changeset
797
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
798 call.GetOutput().Redirect(root + "app/images/unsupported.png");
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
799 }
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
800 }
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
801 }
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
802
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
803
216
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
804 // Upload of DICOM files through HTTP ---------------------------------------
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
805
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
806 static void UploadDicomFile(RestApi::PostCall& call)
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
807 {
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
808 RETRIEVE_CONTEXT(call);
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
809
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
810 const std::string& postData = call.GetPostBody();
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
811 if (postData.size() == 0)
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
812 {
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
813 return;
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
814 }
216
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
815
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
816 LOG(INFO) << "Receiving a DICOM file of " << postData.size() << " bytes through HTTP";
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
817
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
818 std::string publicId;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
819 StoreStatus status = context.Store(publicId, postData);
216
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
820 Json::Value result = Json::objectValue;
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
821
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
822 if (status != StoreStatus_Failure)
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
823 {
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
824 result["ID"] = publicId;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
825 result["Path"] = GetBasePath(ResourceType_Instance, publicId);
216
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
826 }
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
827
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
828 result["Status"] = ToString(status);
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
829 call.GetOutput().AnswerJson(result);
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
830 }
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
831
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
832
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
833
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
834 // DICOM bridge -------------------------------------------------------------
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
835
230
ae2367145b49 renames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 229
diff changeset
836 static bool IsExistingModality(const OrthancRestApi::Modalities& modalities,
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
837 const std::string& id)
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
838 {
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
839 return modalities.find(id) != modalities.end();
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
840 }
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
841
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
842 static void ListModalities(RestApi::GetCall& call)
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
843 {
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
844 RETRIEVE_MODALITIES(call);
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
845
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
846 Json::Value result = Json::arrayValue;
230
ae2367145b49 renames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 229
diff changeset
847 for (OrthancRestApi::Modalities::const_iterator
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
848 it = modalities.begin(); it != modalities.end(); it++)
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
849 {
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
850 result.append(*it);
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
851 }
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
852
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
853 call.GetOutput().AnswerJson(result);
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
854 }
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
855
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
856
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
857 static void ListModalityOperations(RestApi::GetCall& call)
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
858 {
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
859 RETRIEVE_MODALITIES(call);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
860
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
861 std::string id = call.GetUriComponent("id", "");
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
862 if (IsExistingModality(modalities, id))
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
863 {
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
864 Json::Value result = Json::arrayValue;
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
865 result.append("find-patient");
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
866 result.append("find-study");
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
867 result.append("find-series");
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
868 result.append("find");
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
869 result.append("store");
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
870 call.GetOutput().AnswerJson(result);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
871 }
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
872 }
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
873
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
874
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
875
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
876 // Raw access to the DICOM tags of an instance ------------------------------
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
877
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
878 static void GetRawContent(RestApi::GetCall& call)
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
879 {
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 314
diff changeset
880 boost::mutex::scoped_lock lock(cacheMutex_);
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
881
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
882 RETRIEVE_CONTEXT(call);
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
883 std::string id = call.GetUriComponent("id", "");
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
884 ParsedDicomFile& dicom = context.GetDicomFile(id);
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
885 dicom.SendPathValue(call.GetOutput(), call.GetTrailingUri());
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
886 }
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
887
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
888
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
889
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
890 // Modification of DICOM instances ------------------------------------------
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
891
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
892 namespace
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
893 {
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
894 typedef std::set<DicomTag> Removals;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
895 typedef std::map<DicomTag, std::string> Replacements;
350
8031f9cfe7fe removal of old code
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 349
diff changeset
896 typedef std::map< std::pair<DicomRootLevel, std::string>, std::string> UidMap;
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
897 }
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
898
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
899 static void ReplaceInstanceInternal(ParsedDicomFile& toModify,
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
900 const Removals& removals,
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
901 const Replacements& replacements,
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
902 DicomReplaceMode mode,
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
903 bool removePrivateTags)
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
904 {
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
905 if (removePrivateTags)
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
906 {
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
907 toModify.RemovePrivateTags();
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
908 }
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
909
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
910 for (Removals::const_iterator it = removals.begin();
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
911 it != removals.end(); it++)
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
912 {
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
913 toModify.Remove(*it);
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
914 }
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
915
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
916 for (Replacements::const_iterator it = replacements.begin();
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
917 it != replacements.end(); it++)
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
918 {
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
919 toModify.Replace(it->first, it->second, mode);
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
920 }
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
921
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
922 // A new SOP instance UID is automatically generated
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
923 std::string instanceUid = FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Instance);
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
924 toModify.Replace(DICOM_TAG_SOP_INSTANCE_UID, instanceUid, DicomReplaceMode_InsertIfAbsent);
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
925 }
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
926
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
927
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
928 static void ParseRemovals(Removals& target,
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
929 const Json::Value& removals)
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
930 {
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
931 if (!removals.isArray())
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
932 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
933 throw OrthancException(ErrorCode_BadRequest);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
934 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
935
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
936 target.clear();
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
937
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
938 for (Json::Value::ArrayIndex i = 0; i < removals.size(); i++)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
939 {
357
8d3a0db39967 fix of standalone builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 351
diff changeset
940 std::string name = removals[i].asString();
8d3a0db39967 fix of standalone builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 351
diff changeset
941 DicomTag tag = FromDcmtkBridge::ParseTag(name);
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
942 target.insert(tag);
357
8d3a0db39967 fix of standalone builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 351
diff changeset
943
8d3a0db39967 fix of standalone builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 351
diff changeset
944 VLOG(1) << "Removal: " << name << " " << tag << std::endl;
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
945 }
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
946 }
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
947
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
948
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
949 static void ParseReplacements(Replacements& target,
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
950 const Json::Value& replacements)
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
951 {
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
952 if (!replacements.isObject())
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
953 {
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
954 throw OrthancException(ErrorCode_BadRequest);
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
955 }
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
956
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
957 target.clear();
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
958
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
959 Json::Value::Members members = replacements.getMemberNames();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
960 for (size_t i = 0; i < members.size(); i++)
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
961 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
962 const std::string& name = members[i];
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
963 std::string value = replacements[name].asString();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
964
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
965 DicomTag tag = FromDcmtkBridge::ParseTag(name);
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
966 target[tag] = value;
357
8d3a0db39967 fix of standalone builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 351
diff changeset
967
8d3a0db39967 fix of standalone builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 351
diff changeset
968 VLOG(1) << "Replacement: " << name << " " << tag << " == " << value << std::endl;
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
969 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
970 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
971
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
972
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
973 static std::string GeneratePatientName(ServerContext& context)
26efccdff583 anonymisation
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parents: 310
diff changeset
974 {
26efccdff583 anonymisation
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parents: 310
diff changeset
975 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence);
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
976 return "Anonymized" + boost::lexical_cast<std::string>(seq);
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
977 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
978
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
979
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
980 static void SetupAnonymization(Removals& removals,
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
981 Replacements& replacements)
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
982 {
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
983 // This is Table E.1-1 from PS 3.15-2008 - DICOM Part 15: Security and System Management Profiles
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
984 removals.insert(DicomTag(0x0008, 0x0014)); // Instance Creator UID
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
985 //removals.insert(DicomTag(0x0008, 0x0018)); // SOP Instance UID => set by ReplaceInstanceInternal()
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
986 removals.insert(DicomTag(0x0008, 0x0050)); // Accession Number
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
987 removals.insert(DicomTag(0x0008, 0x0080)); // Institution Name
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
988 removals.insert(DicomTag(0x0008, 0x0081)); // Institution Address
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
989 removals.insert(DicomTag(0x0008, 0x0090)); // Referring Physician's Name
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
990 removals.insert(DicomTag(0x0008, 0x0092)); // Referring Physician's Address
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
991 removals.insert(DicomTag(0x0008, 0x0094)); // Referring Physician's Telephone Numbers
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
992 removals.insert(DicomTag(0x0008, 0x1010)); // Station Name
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
993 removals.insert(DicomTag(0x0008, 0x1030)); // Study Description
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
994 removals.insert(DicomTag(0x0008, 0x103e)); // Series Description
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
995 removals.insert(DicomTag(0x0008, 0x1040)); // Institutional Department Name
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
996 removals.insert(DicomTag(0x0008, 0x1048)); // Physician(s) of Record
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
997 removals.insert(DicomTag(0x0008, 0x1050)); // Performing Physicians' Name
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
998 removals.insert(DicomTag(0x0008, 0x1060)); // Name of Physician(s) Reading Study
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
999 removals.insert(DicomTag(0x0008, 0x1070)); // Operators' Name
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1000 removals.insert(DicomTag(0x0008, 0x1080)); // Admitting Diagnoses Description
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1001 removals.insert(DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1002 removals.insert(DicomTag(0x0008, 0x2111)); // Derivation Description
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1003 removals.insert(DicomTag(0x0010, 0x0010)); // Patient's Name
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1004 removals.insert(DicomTag(0x0010, 0x0020)); // Patient ID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1005 removals.insert(DicomTag(0x0010, 0x0030)); // Patient's Birth Date
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1006 removals.insert(DicomTag(0x0010, 0x0032)); // Patient's Birth Time
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1007 removals.insert(DicomTag(0x0010, 0x0040)); // Patient's Sex
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1008 removals.insert(DicomTag(0x0010, 0x1000)); // Other Patient Ids
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1009 removals.insert(DicomTag(0x0010, 0x1001)); // Other Patient Names
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1010 removals.insert(DicomTag(0x0010, 0x1010)); // Patient's Age
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1011 removals.insert(DicomTag(0x0010, 0x1020)); // Patient's Size
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1012 removals.insert(DicomTag(0x0010, 0x1030)); // Patient's Weight
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1013 removals.insert(DicomTag(0x0010, 0x1090)); // Medical Record Locator
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1014 removals.insert(DicomTag(0x0010, 0x2160)); // Ethnic Group
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1015 removals.insert(DicomTag(0x0010, 0x2180)); // Occupation
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1016 removals.insert(DicomTag(0x0010, 0x21b0)); // Additional Patient's History
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1017 removals.insert(DicomTag(0x0010, 0x4000)); // Patient Comments
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1018 removals.insert(DicomTag(0x0018, 0x1000)); // Device Serial Number
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1019 removals.insert(DicomTag(0x0018, 0x1030)); // Protocol Name
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1020 //removals.insert(DicomTag(0x0020, 0x000d)); // Study Instance UID => generated below
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1021 //removals.insert(DicomTag(0x0020, 0x000e)); // Series Instance UID => generated below
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1022 removals.insert(DicomTag(0x0020, 0x0010)); // Study ID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1023 removals.insert(DicomTag(0x0020, 0x0052)); // Frame of Reference UID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1024 removals.insert(DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1025 removals.insert(DicomTag(0x0020, 0x4000)); // Image Comments
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1026 removals.insert(DicomTag(0x0040, 0x0275)); // Request Attributes Sequence
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1027 removals.insert(DicomTag(0x0040, 0xa124)); // UID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1028 removals.insert(DicomTag(0x0040, 0xa730)); // Content Sequence
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1029 removals.insert(DicomTag(0x0088, 0x0140)); // Storage Media File-set UID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1030 removals.insert(DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1031 removals.insert(DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1032
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1033 // Some more removals (from the experience of DICOM files at the CHU of Liege)
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1034 removals.insert(DicomTag(0x0010, 0x1040)); // Patient's Address
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1035 removals.insert(DicomTag(0x0032, 0x1032)); // Requesting Physician
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1036
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1037 // Set the DeidentificationMethod tag
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1038 replacements.insert(std::make_pair(DicomTag(0x0012, 0x0063), "Orthanc " ORTHANC_VERSION " - PS 3.15-2008 Table E.1-1"));
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1039
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1040 // Set the PatientIdentityRemoved
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1041 replacements.insert(std::make_pair(DicomTag(0x0012, 0x0062), "YES"));
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1042
321
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 317
diff changeset
1043 // Generate random study UID if not specified
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 317
diff changeset
1044 if (replacements.find(DICOM_TAG_STUDY_INSTANCE_UID) == replacements.end())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 317
diff changeset
1045 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 317
diff changeset
1046 replacements.insert(std::make_pair(DICOM_TAG_STUDY_INSTANCE_UID,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 317
diff changeset
1047 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Study)));
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 317
diff changeset
1048 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 317
diff changeset
1049
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 317
diff changeset
1050 // Generate random series UID if not specified
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 317
diff changeset
1051 if (replacements.find(DICOM_TAG_SERIES_INSTANCE_UID) == replacements.end())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 317
diff changeset
1052 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 317
diff changeset
1053 replacements.insert(std::make_pair(DICOM_TAG_SERIES_INSTANCE_UID,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 317
diff changeset
1054 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Series)));
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 317
diff changeset
1055 }
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1056 }
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1057
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1058
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1059 static bool ParseModifyRequest(Removals& removals,
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1060 Replacements& replacements,
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1061 bool& removePrivateTags,
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1062 const RestApi::PostCall& call)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1063 {
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1064 removePrivateTags = false;
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1065 Json::Value request;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1066 if (call.ParseJsonRequest(request) &&
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1067 request.isObject())
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1068 {
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1069 Json::Value removalsPart = Json::arrayValue;
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1070 Json::Value replacementsPart = Json::objectValue;
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1071
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1072 if (request.isMember("Remove"))
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1073 {
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1074 removalsPart = request["Remove"];
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1075 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1076
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1077 if (request.isMember("Replace"))
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1078 {
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1079 replacementsPart = request["Replace"];
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1080 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1081
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1082 if (request.isMember("RemovePrivateTags"))
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1083 {
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1084 removePrivateTags = true;
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1085 }
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1086
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1087 ParseRemovals(removals, removalsPart);
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1088 ParseReplacements(replacements, replacementsPart);
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1089
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1090 return true;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1091 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1092 else
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1093 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1094 return false;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1095 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1096 }
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1097
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1098
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1099 static bool ParseAnonymizationRequest(Removals& removals,
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1100 Replacements& replacements,
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1101 bool& removePrivateTags,
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1102 RestApi::PostCall& call)
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1103 {
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1104 RETRIEVE_CONTEXT(call);
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1105
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1106 removePrivateTags = true;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1107
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1108 Json::Value request;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1109 if (call.ParseJsonRequest(request) &&
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1110 request.isObject())
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1111 {
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1112 Json::Value keepPart = Json::arrayValue;
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1113 Json::Value removalsPart = Json::arrayValue;
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1114 Json::Value replacementsPart = Json::objectValue;
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1115
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1116 if (request.isMember("Keep"))
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1117 {
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1118 keepPart = request["Keep"];
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1119 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1120
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1121 if (request.isMember("KeepPrivateTags"))
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1122 {
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1123 removePrivateTags = false;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1124 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1125
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1126 if (request.isMember("Replace"))
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1127 {
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1128 replacementsPart = request["Replace"];
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1129 }
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1130
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1131 Removals toKeep;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1132 ParseRemovals(toKeep, keepPart);
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1133
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1134 SetupAnonymization(removals, replacements);
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1135
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1136 for (Removals::iterator it = toKeep.begin(); it != toKeep.end(); it++)
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1137 {
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1138 removals.erase(*it);
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1139 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1140
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1141 Removals additionalRemovals;
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1142 ParseRemovals(additionalRemovals, removalsPart);
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1143
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1144 for (Removals::iterator it = additionalRemovals.begin();
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1145 it != additionalRemovals.end(); it++)
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1146 {
321
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 317
diff changeset
1147 removals.insert(*it);
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1148 }
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1149
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1150 ParseReplacements(replacements, replacementsPart);
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1151
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1152 // Generate random Patient's Name if none is specified
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1153 if (replacements.find(DicomTag(0x0010, 0x0010)) == replacements.end())
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1154 {
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1155 replacements.insert(std::make_pair(DicomTag(0x0010, 0x0010), GeneratePatientName(context)));
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1156 }
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1157
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1158 // Generate random Patient's ID if none is specified
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1159 if (replacements.find(DICOM_TAG_PATIENT_ID) == replacements.end())
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1160 {
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1161 replacements.insert(std::make_pair(DICOM_TAG_PATIENT_ID,
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1162 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Patient)));
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1163 }
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1164
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1165 return true;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1166 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1167 else
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1168 {
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1169 return false;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1170 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1171 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1172
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1173
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1174 static void AnonymizeOrModifyInstance(Removals& removals,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1175 Replacements& replacements,
314
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1176 bool removePrivateTags,
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1177 RestApi::PostCall& call)
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 299
diff changeset
1178 {
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 314
diff changeset
1179 boost::mutex::scoped_lock lock(cacheMutex_);
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 299
diff changeset
1180 RETRIEVE_CONTEXT(call);
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 299
diff changeset
1181
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 299
diff changeset
1182 std::string id = call.GetUriComponent("id", "");
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 299
diff changeset
1183 ParsedDicomFile& dicom = context.GetDicomFile(id);
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 299
diff changeset
1184
314
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1185 std::auto_ptr<ParsedDicomFile> modified(dicom.Clone());
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1186 ReplaceInstanceInternal(*modified, removals, replacements, DicomReplaceMode_InsertIfAbsent, removePrivateTags);
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1187 modified->Answer(call.GetOutput());
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1188 }
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1189
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1190
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1191 static bool RetrieveMappedUid(ParsedDicomFile& dicom,
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1192 DicomRootLevel level,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1193 Replacements& replacements,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1194 UidMap& uidMap)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1195 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1196 std::auto_ptr<DicomTag> tag;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1197 if (level == DicomRootLevel_Series)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1198 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1199 tag.reset(new DicomTag(DICOM_TAG_SERIES_INSTANCE_UID));
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1200 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1201 else
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1202 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1203 assert(level == DicomRootLevel_Study);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1204 tag.reset(new DicomTag(DICOM_TAG_STUDY_INSTANCE_UID));
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1205 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1206
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1207 std::string original;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1208 if (!dicom.GetTagValue(original, *tag))
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1209 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1210 throw OrthancException(ErrorCode_InternalError);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1211 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1212
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1213 std::string mapped;
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1214 bool isNew;
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1215
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1216 UidMap::const_iterator previous = uidMap.find(std::make_pair(level, original));
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1217 if (previous == uidMap.end())
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1218 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1219 mapped = FromDcmtkBridge::GenerateUniqueIdentifier(level);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1220 uidMap.insert(std::make_pair(std::make_pair(level, original), mapped));
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1221 isNew = true;
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1222 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1223 else
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1224 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1225 mapped = previous->second;
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1226 isNew = false;
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1227 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1228
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1229 replacements[*tag] = mapped;
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1230 return isNew;
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1231 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1232
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1233
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1234 static void AnonymizeOrModifyResource(Removals& removals,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1235 Replacements& replacements,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1236 bool removePrivateTags,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1237 MetadataType metadataType,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1238 ChangeType changeType,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1239 ResourceType resourceType,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1240 RestApi::PostCall& call)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1241 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1242 typedef std::list<std::string> Instances;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1243
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1244 bool isFirst = true;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1245 Json::Value result(Json::objectValue);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1246
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1247 boost::mutex::scoped_lock lock(cacheMutex_);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1248 RETRIEVE_CONTEXT(call);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1249
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1250 Instances instances;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1251 std::string id = call.GetUriComponent("id", "");
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1252 context.GetIndex().GetChildInstances(instances, id);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1253
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1254 if (instances.size() == 0)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1255 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1256 return;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1257 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1258
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1259
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1260 /**
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1261 * Loop over all the instances of the resource.
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1262 **/
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1263
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1264 UidMap uidMap;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1265 for (Instances::const_iterator it = instances.begin();
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1266 it != instances.end(); it++)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1267 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1268 LOG(INFO) << "Modifying instance " << *it;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1269 ParsedDicomFile& original = context.GetDicomFile(*it);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1270
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1271 bool isNewSeries = RetrieveMappedUid(original, DicomRootLevel_Series, replacements, uidMap);
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1272
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1273 bool isNewStudy = false;
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1274 if (resourceType == ResourceType_Study ||
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1275 resourceType == ResourceType_Patient)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1276 {
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1277 isNewStudy = RetrieveMappedUid(original, DicomRootLevel_Study, replacements, uidMap);
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1278 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1279
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1280 /**
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1281 * Compute the resulting DICOM instance and store it into the Orthanc store.
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1282 **/
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1283
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1284 std::auto_ptr<ParsedDicomFile> modified(original.Clone());
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1285 ReplaceInstanceInternal(*modified, removals, replacements, DicomReplaceMode_InsertIfAbsent, removePrivateTags);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1286
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1287 std::string modifiedInstance;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1288 if (context.Store(modifiedInstance, modified->GetDicom()) != StoreStatus_Success)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1289 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1290 LOG(ERROR) << "Error while storing a modified instance " << *it;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1291 return;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1292 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1293
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1294
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1295 /**
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1296 * Record metadata information (AnonimizedFrom/ModifiedFrom).
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1297 **/
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1298
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1299 DicomInstanceHasher modifiedHasher = modified->GetHasher();
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1300 DicomInstanceHasher originalHasher = original.GetHasher();
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1301
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1302 if (isNewSeries)
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1303 {
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1304 context.GetIndex().SetMetadata(modifiedHasher.HashSeries(),
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1305 metadataType, originalHasher.HashSeries());
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1306 }
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1307
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1308 if (isNewStudy)
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1309 {
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1310 context.GetIndex().SetMetadata(modifiedHasher.HashStudy(),
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1311 metadataType, originalHasher.HashStudy());
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1312 }
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1313
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1314 assert(*it == originalHasher.HashInstance());
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1315 assert(modifiedInstance == modifiedHasher.HashInstance());
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1316 context.GetIndex().SetMetadata(modifiedInstance, metadataType, *it);
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1317
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1318
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1319 /**
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1320 * Compute the JSON object that is returned by the REST call.
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1321 **/
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1322
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1323 if (isFirst)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1324 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1325 std::string newId;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1326
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1327 switch (resourceType)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1328 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1329 case ResourceType_Series:
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1330 newId = modifiedHasher.HashSeries();
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1331 break;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1332
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1333 case ResourceType_Study:
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1334 newId = modifiedHasher.HashStudy();
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1335 break;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1336
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1337 case ResourceType_Patient:
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1338 newId = modifiedHasher.HashPatient();
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1339 break;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1340
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1341 default:
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1342 throw OrthancException(ErrorCode_InternalError);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1343 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1344
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1345 result["Type"] = ToString(resourceType);
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1346 result["ID"] = newId;
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1347 result["Path"] = GetBasePath(resourceType, newId);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1348 result["PatientID"] = modifiedHasher.HashPatient();
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1349 isFirst = false;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1350 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1351 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1352
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1353 call.GetOutput().AnswerJson(result);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1354 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1355
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1356
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1357
314
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1358 static void ModifyInstance(RestApi::PostCall& call)
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1359 {
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1360 Removals removals;
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1361 Replacements replacements;
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1362 bool removePrivateTags;
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1363
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1364 if (ParseModifyRequest(removals, replacements, removePrivateTags, call))
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1365 {
314
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1366 AnonymizeOrModifyInstance(removals, replacements, removePrivateTags, call);
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1367 }
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1368 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1369
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1370
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1371 static void AnonymizeInstance(RestApi::PostCall& call)
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1372 {
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1373 Removals removals;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1374 Replacements replacements;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1375 bool removePrivateTags;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1376
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1377 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call))
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1378 {
314
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1379 AnonymizeOrModifyInstance(removals, replacements, removePrivateTags, call);
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1380 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1381 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1382
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1383
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1384 static void ModifySeriesInplace(RestApi::PostCall& call)
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1385 {
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1386 Removals removals;
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1387 Replacements replacements;
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1388 bool removePrivateTags;
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1389
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1390 if (ParseModifyRequest(removals, replacements, removePrivateTags, call))
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1391 {
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1392 AnonymizeOrModifyResource(removals, replacements, removePrivateTags,
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1393 MetadataType_ModifiedFrom, ChangeType_ModifiedSeries,
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1394 ResourceType_Series, call);
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1395 }
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1396 }
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 314
diff changeset
1397
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1398
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1399 static void AnonymizeSeriesInplace(RestApi::PostCall& call)
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1400 {
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1401 Removals removals;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1402 Replacements replacements;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1403 bool removePrivateTags;
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1404
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1405 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call))
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1406 {
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1407 AnonymizeOrModifyResource(removals, replacements, removePrivateTags,
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1408 MetadataType_AnonymizedFrom, ChangeType_AnonymizedSeries,
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1409 ResourceType_Series, call);
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1410 }
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1411 }
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1412
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1413
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1414 static void ModifyStudyInplace(RestApi::PostCall& call)
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1415 {
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1416 Removals removals;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1417 Replacements replacements;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1418 bool removePrivateTags;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1419
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1420 if (ParseModifyRequest(removals, replacements, removePrivateTags, call))
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1421 {
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1422 AnonymizeOrModifyResource(removals, replacements, removePrivateTags,
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1423 MetadataType_ModifiedFrom, ChangeType_ModifiedStudy,
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1424 ResourceType_Study, call);
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1425 }
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1426 }
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1427
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1428
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1429 static void AnonymizeStudyInplace(RestApi::PostCall& call)
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1430 {
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1431 Removals removals;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1432 Replacements replacements;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1433 bool removePrivateTags;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1434
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1435 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call))
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1436 {
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1437 AnonymizeOrModifyResource(removals, replacements, removePrivateTags,
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1438 MetadataType_AnonymizedFrom, ChangeType_AnonymizedStudy,
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1439 ResourceType_Study, call);
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1440 }
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1441 }
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1442
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1443
351
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1444 static void ModifyPatientInplace(RestApi::PostCall& call)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1445 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1446 Removals removals;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1447 Replacements replacements;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1448 bool removePrivateTags;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1449
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1450 if (ParseModifyRequest(removals, replacements, removePrivateTags, call))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1451 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1452 AnonymizeOrModifyResource(removals, replacements, removePrivateTags,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1453 MetadataType_ModifiedFrom, ChangeType_ModifiedPatient,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1454 ResourceType_Patient, call);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1455 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1456 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1457
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1458
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1459 static void AnonymizePatientInplace(RestApi::PostCall& call)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1460 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1461 Removals removals;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1462 Replacements replacements;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1463 bool removePrivateTags;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1464
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1465 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1466 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1467 AnonymizeOrModifyResource(removals, replacements, removePrivateTags,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1468 MetadataType_AnonymizedFrom, ChangeType_AnonymizedPatient,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1469 ResourceType_Patient, call);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1470 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1471 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1472
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1473
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
1474
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
1475 // Registration of the various REST handlers --------------------------------
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
1476
230
ae2367145b49 renames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 229
diff changeset
1477 OrthancRestApi::OrthancRestApi(ServerContext& context) :
224
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 218
diff changeset
1478 context_(context)
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1479 {
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1480 GetListOfDicomModalities(modalities_);
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1481
211
b7aea293b965 list of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
1482 Register("/", ServeRoot);
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1483 Register("/system", GetSystemInformation);
238
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
1484 Register("/statistics", GetStatistics);
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1485 Register("/changes", GetChanges);
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1486 Register("/exports", GetExports);
211
b7aea293b965 list of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
1487
216
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
1488 Register("/instances", UploadDicomFile);
211
b7aea293b965 list of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
1489 Register("/instances", ListResources<ResourceType_Instance>);
b7aea293b965 list of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
1490 Register("/patients", ListResources<ResourceType_Patient>);
b7aea293b965 list of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
1491 Register("/series", ListResources<ResourceType_Series>);
b7aea293b965 list of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
1492 Register("/studies", ListResources<ResourceType_Study>);
212
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1493
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1494 Register("/instances/{id}", DeleteSingleResource<ResourceType_Instance>);
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1495 Register("/instances/{id}", GetSingleResource<ResourceType_Instance>);
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1496 Register("/patients/{id}", DeleteSingleResource<ResourceType_Patient>);
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1497 Register("/patients/{id}", GetSingleResource<ResourceType_Patient>);
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1498 Register("/series/{id}", DeleteSingleResource<ResourceType_Series>);
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1499 Register("/series/{id}", GetSingleResource<ResourceType_Series>);
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1500 Register("/studies/{id}", DeleteSingleResource<ResourceType_Study>);
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1501 Register("/studies/{id}", GetSingleResource<ResourceType_Study>);
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
1502
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
1503 Register("/patients/{id}/archive", GetArchive<ResourceType_Patient>);
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
1504 Register("/studies/{id}/archive", GetArchive<ResourceType_Study>);
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
1505 Register("/series/{id}/archive", GetArchive<ResourceType_Series>);
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
1506
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
1507 Register("/patients/{id}/protected", IsProtectedPatient);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
1508 Register("/patients/{id}/protected", SetPatientProtection);
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
1509 Register("/instances/{id}/file", GetInstanceFile);
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
1510 Register("/instances/{id}/tags", GetInstanceTags<false>);
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
1511 Register("/instances/{id}/simplified-tags", GetInstanceTags<true>);
214
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
1512 Register("/instances/{id}/frames", ListFrames);
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
1513 Register("/instances/{id}/content/*", GetRawContent);
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
1514
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
1515 Register("/instances/{id}/frames/{frame}/preview", GetImage<ImageExtractionMode_Preview>);
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
1516 Register("/instances/{id}/frames/{frame}/image-uint8", GetImage<ImageExtractionMode_UInt8>);
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
1517 Register("/instances/{id}/frames/{frame}/image-uint16", GetImage<ImageExtractionMode_UInt16>);
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
1518 Register("/instances/{id}/preview", GetImage<ImageExtractionMode_Preview>);
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
1519 Register("/instances/{id}/image-uint8", GetImage<ImageExtractionMode_UInt8>);
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
1520 Register("/instances/{id}/image-uint16", GetImage<ImageExtractionMode_UInt16>);
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
1521
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1522 Register("/modalities", ListModalities);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1523 Register("/modalities/{id}", ListModalityOperations);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1524 Register("/modalities/{id}/find-patient", DicomFindPatient);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1525 Register("/modalities/{id}/find-study", DicomFindStudy);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1526 Register("/modalities/{id}/find-series", DicomFindSeries);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1527 Register("/modalities/{id}/find", DicomFind);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1528 Register("/modalities/{id}/store", DicomStore);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1529
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1530 Register("/instances/{id}/modify", ModifyInstance);
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1531 Register("/series/{id}/modify", ModifySeriesInplace);
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1532 Register("/studies/{id}/modify", ModifyStudyInplace);
351
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1533 Register("/patients/{id}/modify", ModifyPatientInplace);
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1534
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1535 Register("/instances/{id}/anonymize", AnonymizeInstance);
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1536 Register("/series/{id}/anonymize", AnonymizeSeriesInplace);
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1537 Register("/studies/{id}/anonymize", AnonymizeStudyInplace);
351
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1538 Register("/patients/{id}/anonymize", AnonymizePatientInplace);
342
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
1539
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
1540 Register("/tools/generate-uid", GenerateUid);
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1541 }
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1542 }