Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 1570:2bd2c280f9b5
fix indentation
author | jodogne |
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date | Sun, 23 Aug 2015 11:13:03 +0200 |
parents | 27774f6f84e4 |
children | 904096e7367e |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * |
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6 * This program is free software: you can redistribute it and/or |
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7 * modify it under the terms of the GNU General Public License as |
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8 * published by the Free Software Foundation, either version 3 of the |
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9 * License, or (at your option) any later version. |
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10 * |
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11 * In addition, as a special exception, the copyright holders of this |
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12 * program give permission to link the code of its release with the |
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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14 * that use the same license as the "OpenSSL" library), and distribute |
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15 * the linked executables. You must obey the GNU General Public License |
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16 * in all respects for all of the code used other than "OpenSSL". If you |
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17 * modify file(s) with this exception, you may extend this exception to |
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18 * your version of the file(s), but you are not obligated to do so. If |
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19 * you do not wish to do so, delete this exception statement from your |
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20 * version. If you delete this exception statement from all source files |
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21 * in the program, then also delete it here. |
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22 * |
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23 * This program is distributed in the hope that it will be useful, but |
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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26 * General Public License for more details. |
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27 * |
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28 * You should have received a copy of the GNU General Public License |
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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30 **/ |
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31 |
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32 |
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33 #include "../PrecompiledHeadersServer.h" |
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34 #include "OrthancRestApi.h" |
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35 |
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36 #include "../../Core/Logging.h" |
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37 #include "../../Core/Uuid.h" |
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39 #include "../ServerContext.h" |
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41 |
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42 #include <boost/lexical_cast.hpp> |
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43 |
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44 namespace Orthanc |
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45 { |
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46 // Modification of DICOM instances ------------------------------------------ |
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47 |
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48 enum TagOperation |
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49 { |
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50 TagOperation_Keep, |
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51 TagOperation_Remove |
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52 }; |
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53 |
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54 static void ParseListOfTags(DicomModification& target, |
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55 const Json::Value& query, |
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56 TagOperation operation) |
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57 { |
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58 if (!query.isArray()) |
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59 { |
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60 throw OrthancException(ErrorCode_BadRequest); |
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61 } |
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62 |
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63 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++) |
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64 { |
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65 std::string name = query[i].asString(); |
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66 |
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67 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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68 |
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69 switch (operation) |
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70 { |
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71 case TagOperation_Keep: |
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72 target.Keep(tag); |
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73 VLOG(1) << "Keep: " << name << " " << tag << std::endl; |
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74 break; |
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75 |
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76 case TagOperation_Remove: |
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77 target.Remove(tag); |
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78 VLOG(1) << "Remove: " << name << " " << tag << std::endl; |
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79 break; |
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80 |
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81 default: |
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82 throw OrthancException(ErrorCode_InternalError); |
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83 } |
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84 } |
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85 } |
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86 |
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87 |
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88 static void ParseReplacements(DicomModification& target, |
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89 const Json::Value& replacements) |
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90 { |
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91 if (!replacements.isObject()) |
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92 { |
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93 throw OrthancException(ErrorCode_BadRequest); |
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94 } |
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95 |
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96 Json::Value::Members members = replacements.getMemberNames(); |
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97 for (size_t i = 0; i < members.size(); i++) |
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98 { |
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99 const std::string& name = members[i]; |
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100 std::string value = replacements[name].asString(); |
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101 |
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102 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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103 target.Replace(tag, value); |
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104 |
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105 VLOG(1) << "Replace: " << name << " " << tag << " == " << value << std::endl; |
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106 } |
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107 } |
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108 |
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109 |
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110 static std::string GeneratePatientName(ServerContext& context) |
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111 { |
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112 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence); |
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113 return "Anonymized" + boost::lexical_cast<std::string>(seq); |
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114 } |
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115 |
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116 |
1010 | 117 |
118 bool OrthancRestApi::ParseModifyRequest(DicomModification& target, | |
119 const Json::Value& request) | |
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120 { |
1010 | 121 if (request.isObject()) |
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122 { |
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123 if (request.isMember("RemovePrivateTags")) |
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124 { |
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125 target.SetRemovePrivateTags(true); |
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126 } |
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127 |
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128 if (request.isMember("Remove")) |
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129 { |
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130 ParseListOfTags(target, request["Remove"], TagOperation_Remove); |
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131 } |
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132 |
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133 if (request.isMember("Replace")) |
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134 { |
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135 ParseReplacements(target, request["Replace"]); |
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136 } |
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137 |
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138 return true; |
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139 } |
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140 else |
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141 { |
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142 return false; |
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143 } |
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144 } |
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145 |
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146 |
1010 | 147 static bool ParseModifyRequest(DicomModification& target, |
148 const RestApiPostCall& call) | |
149 { | |
150 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"}}' | |
151 | |
152 Json::Value request; | |
153 if (call.ParseJsonRequest(request)) | |
154 { | |
155 return OrthancRestApi::ParseModifyRequest(target, request); | |
156 } | |
157 else | |
158 { | |
159 return false; | |
160 } | |
161 } | |
162 | |
163 | |
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164 static bool ParseAnonymizationRequest(DicomModification& target, |
974 | 165 RestApiPostCall& call) |
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166 { |
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167 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null,"Remove":["Modality"]}' > Anonymized.dcm |
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168 |
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169 target.SetupAnonymization(); |
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170 std::string patientName = target.GetReplacement(DICOM_TAG_PATIENT_NAME); |
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171 |
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172 Json::Value request; |
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173 if (call.ParseJsonRequest(request) && request.isObject()) |
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174 { |
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175 if (request.isMember("KeepPrivateTags")) |
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176 { |
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177 target.SetRemovePrivateTags(false); |
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178 } |
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179 |
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180 if (request.isMember("Remove")) |
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181 { |
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182 ParseListOfTags(target, request["Remove"], TagOperation_Remove); |
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183 } |
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184 |
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185 if (request.isMember("Replace")) |
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186 { |
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187 ParseReplacements(target, request["Replace"]); |
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188 } |
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189 |
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190 if (request.isMember("Keep")) |
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191 { |
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192 ParseListOfTags(target, request["Keep"], TagOperation_Keep); |
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193 } |
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194 |
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195 if (target.IsReplaced(DICOM_TAG_PATIENT_NAME) && |
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196 target.GetReplacement(DICOM_TAG_PATIENT_NAME) == patientName) |
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197 { |
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198 // Overwrite the random Patient's Name by one that is more |
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199 // user-friendly (provided none was specified by the user) |
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200 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call)), true); |
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201 } |
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202 |
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203 return true; |
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204 } |
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205 else |
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206 { |
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207 return false; |
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208 } |
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209 } |
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210 |
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211 |
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212 static void AnonymizeOrModifyInstance(DicomModification& modification, |
974 | 213 RestApiPostCall& call) |
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214 { |
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215 std::string id = call.GetUriComponent("id", ""); |
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216 |
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217 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
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218 |
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219 std::auto_ptr<ParsedDicomFile> modified(locker.GetDicom().Clone()); |
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220 modification.Apply(*modified); |
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221 modified->Answer(call.GetOutput()); |
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222 } |
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223 |
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224 |
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225 static void AnonymizeOrModifyResource(DicomModification& modification, |
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226 MetadataType metadataType, |
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227 ChangeType changeType, |
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228 ResourceType resourceType, |
974 | 229 RestApiPostCall& call) |
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230 { |
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231 bool isFirst = true; |
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232 Json::Value result(Json::objectValue); |
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233 |
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234 ServerContext& context = OrthancRestApi::GetContext(call); |
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235 |
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236 typedef std::list<std::string> Instances; |
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237 Instances instances; |
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238 std::string id = call.GetUriComponent("id", ""); |
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239 context.GetIndex().GetChildInstances(instances, id); |
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240 |
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241 if (instances.empty()) |
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242 { |
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243 return; |
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244 } |
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245 |
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246 |
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247 /** |
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248 * Loop over all the instances of the resource. |
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249 **/ |
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250 |
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251 for (Instances::const_iterator it = instances.begin(); |
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252 it != instances.end(); ++it) |
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253 { |
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254 LOG(INFO) << "Modifying instance " << *it; |
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255 |
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256 std::auto_ptr<ServerContext::DicomCacheLocker> locker; |
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257 |
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258 try |
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259 { |
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260 locker.reset(new ServerContext::DicomCacheLocker(OrthancRestApi::GetContext(call), *it)); |
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261 } |
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262 catch (OrthancException&) |
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263 { |
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264 // This child instance has been removed in between |
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265 continue; |
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266 } |
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267 |
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268 |
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269 ParsedDicomFile& original = locker->GetDicom(); |
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270 DicomInstanceHasher originalHasher = original.GetHasher(); |
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271 |
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272 |
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273 /** |
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274 * Compute the resulting DICOM instance. |
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275 **/ |
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276 |
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277 std::auto_ptr<ParsedDicomFile> modified(original.Clone()); |
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278 modification.Apply(*modified); |
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279 |
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280 DicomInstanceToStore toStore; |
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281 toStore.SetParsedDicomFile(*modified); |
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282 |
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283 |
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284 /** |
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285 * Prepare the metadata information to associate with the |
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286 * resulting DICOM instance (AnonymizedFrom/ModifiedFrom). |
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287 **/ |
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288 |
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289 DicomInstanceHasher modifiedHasher = modified->GetHasher(); |
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290 |
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291 if (originalHasher.HashSeries() != modifiedHasher.HashSeries()) |
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292 { |
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293 toStore.AddMetadata(ResourceType_Series, metadataType, originalHasher.HashSeries()); |
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294 } |
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295 |
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296 if (originalHasher.HashStudy() != modifiedHasher.HashStudy()) |
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297 { |
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298 toStore.AddMetadata(ResourceType_Study, metadataType, originalHasher.HashStudy()); |
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299 } |
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300 |
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301 if (originalHasher.HashPatient() != modifiedHasher.HashPatient()) |
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302 { |
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303 toStore.AddMetadata(ResourceType_Patient, metadataType, originalHasher.HashPatient()); |
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304 } |
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305 |
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306 assert(*it == originalHasher.HashInstance()); |
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307 toStore.AddMetadata(ResourceType_Instance, metadataType, *it); |
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308 |
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309 |
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310 /** |
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311 * Store the resulting DICOM instance into the Orthanc store. |
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312 **/ |
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313 |
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314 std::string modifiedInstance; |
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315 if (context.Store(modifiedInstance, toStore) != StoreStatus_Success) |
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316 { |
1569 | 317 throw OrthancException("Error while storing a modified instance " + *it); |
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318 } |
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319 |
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320 // Sanity checks in debug mode |
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321 assert(modifiedInstance == modifiedHasher.HashInstance()); |
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322 |
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323 |
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324 /** |
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325 * Compute the JSON object that is returned by the REST call. |
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326 **/ |
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327 |
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328 if (isFirst) |
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329 { |
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330 std::string newId; |
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331 |
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332 switch (resourceType) |
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333 { |
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334 case ResourceType_Series: |
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335 newId = modifiedHasher.HashSeries(); |
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336 break; |
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337 |
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338 case ResourceType_Study: |
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339 newId = modifiedHasher.HashStudy(); |
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340 break; |
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341 |
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342 case ResourceType_Patient: |
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343 newId = modifiedHasher.HashPatient(); |
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344 break; |
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345 |
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346 default: |
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347 throw OrthancException(ErrorCode_InternalError); |
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348 } |
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349 |
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350 result["Type"] = EnumerationToString(resourceType); |
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351 result["ID"] = newId; |
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352 result["Path"] = GetBasePath(resourceType, newId); |
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353 result["PatientID"] = modifiedHasher.HashPatient(); |
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354 isFirst = false; |
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355 } |
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356 } |
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357 |
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358 call.GetOutput().AnswerJson(result); |
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359 } |
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360 |
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361 |
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362 |
974 | 363 static void ModifyInstance(RestApiPostCall& call) |
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364 { |
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365 DicomModification modification; |
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366 modification.SetAllowManualIdentifiers(true); |
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367 |
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368 if (ParseModifyRequest(modification, call)) |
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369 { |
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370 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID)) |
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371 { |
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372 modification.SetLevel(ResourceType_Patient); |
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373 } |
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374 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
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375 { |
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376 modification.SetLevel(ResourceType_Study); |
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377 } |
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378 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
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379 { |
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380 modification.SetLevel(ResourceType_Series); |
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381 } |
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382 else |
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383 { |
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384 modification.SetLevel(ResourceType_Instance); |
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385 } |
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386 |
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387 AnonymizeOrModifyInstance(modification, call); |
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388 } |
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389 } |
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390 |
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391 |
974 | 392 static void AnonymizeInstance(RestApiPostCall& call) |
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393 { |
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394 DicomModification modification; |
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395 modification.SetAllowManualIdentifiers(true); |
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396 |
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397 if (ParseAnonymizationRequest(modification, call)) |
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398 { |
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399 AnonymizeOrModifyInstance(modification, call); |
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400 } |
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401 } |
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402 |
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403 |
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404 template <enum ChangeType changeType, |
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405 enum ResourceType resourceType> |
974 | 406 static void ModifyResource(RestApiPostCall& call) |
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407 { |
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408 DicomModification modification; |
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409 |
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410 if (ParseModifyRequest(modification, call)) |
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411 { |
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412 modification.SetLevel(resourceType); |
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413 AnonymizeOrModifyResource(modification, MetadataType_ModifiedFrom, |
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414 changeType, resourceType, call); |
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415 } |
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416 } |
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417 |
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418 |
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419 template <enum ChangeType changeType, |
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420 enum ResourceType resourceType> |
974 | 421 static void AnonymizeResource(RestApiPostCall& call) |
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422 { |
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423 DicomModification modification; |
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424 |
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425 if (ParseAnonymizationRequest(modification, call)) |
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426 { |
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427 AnonymizeOrModifyResource(modification, MetadataType_AnonymizedFrom, |
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428 changeType, resourceType, call); |
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429 } |
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430 } |
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431 |
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432 |
1569 | 433 static void StoreCreatedInstance(std::string& id /* out */, |
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434 ServerContext& context, |
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435 ParsedDicomFile& dicom) |
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436 { |
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437 DicomInstanceToStore toStore; |
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438 toStore.SetParsedDicomFile(dicom); |
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439 |
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440 StoreStatus status = context.Store(id, toStore); |
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441 |
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442 if (status == StoreStatus_Failure) |
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443 { |
1569 | 444 throw OrthancException("Error while storing a manually-created instance"); |
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445 } |
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446 } |
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447 |
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448 |
1569 | 449 static void CreateDicomV1(ParsedDicomFile& dicom, |
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450 const Json::Value& request) |
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451 { |
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452 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}' |
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453 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}' |
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454 |
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455 assert(request.isObject()); |
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456 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom"; |
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457 |
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458 Json::Value::Members members = request.getMemberNames(); |
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459 for (size_t i = 0; i < members.size(); i++) |
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460 { |
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461 const std::string& name = members[i]; |
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462 if (request[name].type() != Json::stringValue) |
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463 { |
1569 | 464 throw OrthancException("Only string values are supported when creating DICOM instances"); |
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465 } |
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466 |
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467 std::string value = request[name].asString(); |
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468 |
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469 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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470 if (tag == DICOM_TAG_PIXEL_DATA) |
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471 { |
1562 | 472 dicom.EmbedContent(value); |
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473 } |
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474 else |
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475 { |
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476 dicom.Replace(tag, value); |
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477 } |
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478 } |
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479 } |
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480 |
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481 |
1569 | 482 static void InjectTags(ParsedDicomFile& dicom, |
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483 const Json::Value& tags) |
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484 { |
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485 if (tags.type() != Json::objectValue) |
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486 { |
1569 | 487 throw OrthancException("Bad syntax to specify the tags"); |
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488 } |
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489 |
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490 // Inject the user-specified tags |
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491 Json::Value::Members members = tags.getMemberNames(); |
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492 for (size_t i = 0; i < members.size(); i++) |
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493 { |
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494 const std::string& name = members[i]; |
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495 if (tags[name].type() != Json::stringValue) |
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496 { |
1569 | 497 throw OrthancException("Only string values are supported when creating DICOM instances"); |
1565
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498 } |
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499 |
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500 std::string value = tags[name].asString(); |
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501 |
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502 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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503 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
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504 { |
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changeset
|
505 if (tag != DICOM_TAG_PATIENT_ID && |
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|
506 dicom.HasTag(tag)) |
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changeset
|
507 { |
1569 | 508 throw OrthancException("Trying to override a value inherited from a parent module"); |
1565
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509 } |
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510 |
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511 if (tag == DICOM_TAG_PIXEL_DATA) |
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512 { |
1569 | 513 throw OrthancException("Use \"Content\" to inject an image into a new DICOM instance"); |
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514 } |
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515 else |
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516 { |
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517 dicom.Replace(tag, Toolbox::ConvertFromUtf8(value, dicom.GetEncoding())); |
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518 } |
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519 } |
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520 } |
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521 } |
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522 |
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523 |
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524 static void CreateSeries(RestApiPostCall& call, |
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525 ParsedDicomFile& base /* in */, |
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526 const Json::Value& content) |
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527 { |
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528 assert(content.isArray()); |
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529 assert(content.size() > 0); |
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530 ServerContext& context = OrthancRestApi::GetContext(call); |
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531 |
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532 base.Replace(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size())); |
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533 base.Replace(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1"); |
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534 |
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535 std::string someInstance; |
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536 |
1566 | 537 try |
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538 { |
1569 | 539 for (Json::ArrayIndex i = 0; i < content.size(); i++) |
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540 { |
1566 | 541 std::auto_ptr<ParsedDicomFile> dicom(base.Clone()); |
542 const Json::Value* payload = NULL; | |
543 | |
544 if (content[i].type() == Json::stringValue) | |
545 { | |
546 payload = &content[i]; | |
547 } | |
548 else if (content[i].type() == Json::objectValue) | |
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549 { |
1566 | 550 if (!content[i].isMember("Content")) |
551 { | |
1569 | 552 throw OrthancException("No payload is present for one instance in the series"); |
1566 | 553 } |
554 | |
555 payload = &content[i]["Content"]; | |
556 | |
1569 | 557 if (content[i].isMember("Tags")) |
1570 | 558 { |
559 InjectTags(*dicom, content[i]["Tags"]); | |
560 } | |
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561 } |
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562 |
1566 | 563 if (payload == NULL || |
564 payload->type() != Json::stringValue) | |
565 { | |
1569 | 566 throw OrthancException("The payload of the DICOM instance must be specified according to Data URI scheme"); |
1566 | 567 } |
1565
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568 |
1566 | 569 dicom->EmbedContent(payload->asString()); |
570 dicom->Replace(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1)); | |
571 dicom->Replace(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1)); | |
572 | |
1569 | 573 StoreCreatedInstance(someInstance, context, *dicom); |
1565
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574 } |
1566 | 575 } |
1569 | 576 catch (OrthancException& e) |
1566 | 577 { |
1569 | 578 // Error: Remove the newly-created series |
579 | |
580 std::string series; | |
581 if (context.GetIndex().LookupParent(series, someInstance)) | |
1570 | 582 { |
1569 | 583 Json::Value dummy; |
584 context.GetIndex().DeleteResource(dummy, series, ResourceType_Series); | |
1570 | 585 } |
1569 | 586 |
587 throw e; | |
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588 } |
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589 |
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590 std::string series; |
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591 if (context.GetIndex().LookupParent(series, someInstance)) |
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592 { |
1569 | 593 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success); |
1564
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594 } |
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595 } |
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596 |
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597 |
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598 static void CreateDicomV2(RestApiPostCall& call, |
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599 const Json::Value& request) |
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600 { |
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601 assert(request.isObject()); |
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602 ServerContext& context = OrthancRestApi::GetContext(call); |
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603 |
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604 if (!request.isMember("Tags") || |
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605 request["Tags"].type() != Json::objectValue) |
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606 { |
1569 | 607 throw OrthancException(ErrorCode_BadRequest); |
1555
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608 } |
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Creation of DICOM files with encapsulated PDF
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609 |
1565
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610 ParsedDicomFile dicom; |
1558
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611 |
1557 | 612 { |
1565
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613 Encoding encoding; |
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614 |
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615 if (request["Tags"].isMember("SpecificCharacterSet")) |
1558
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616 { |
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617 const char* tmp = request["Tags"]["SpecificCharacterSet"].asCString(); |
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618 if (!GetDicomEncoding(encoding, tmp)) |
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619 { |
1569 | 620 throw OrthancException("Unknown specific character set: " + std::string(tmp)); |
1565
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621 } |
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622 } |
1565
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623 else |
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624 { |
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625 std::string tmp = Configuration::GetGlobalStringParameter("DefaultEncoding", "Latin1"); |
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626 encoding = StringToEncoding(tmp.c_str()); |
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627 } |
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628 |
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629 dicom.SetEncoding(encoding); |
1557 | 630 } |
631 | |
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632 ResourceType parentType = ResourceType_Instance; |
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633 |
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634 if (request.isMember("Parent")) |
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635 { |
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636 // Locate the parent tags |
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637 std::string parent = request["Parent"].asString(); |
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638 if (!context.GetIndex().LookupResourceType(parentType, parent)) |
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639 { |
1569 | 640 throw OrthancException("Trying to attach a new DICOM instance to an inexistent resource: " + parent); |
1555
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641 } |
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642 |
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643 if (parentType == ResourceType_Instance) |
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644 { |
1569 | 645 throw OrthancException("Trying to attach a new DICOM instance to an instance (must be a series, study or patient): " + parent); |
1555
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646 } |
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647 |
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648 // Select one existing child instance of the parent resource, to |
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649 // retrieve all its tags |
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650 Json::Value siblingTags; |
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651 |
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652 { |
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653 // Retrieve all the instances of the parent resource |
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654 std::list<std::string> siblingInstances; |
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655 context.GetIndex().GetChildInstances(siblingInstances, parent); |
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656 |
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657 if (siblingInstances.empty()) |
1569 | 658 { |
659 // Error: No instance (should never happen) | |
660 throw OrthancException(ErrorCode_InternalError); | |
1555
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Creation of DICOM files with encapsulated PDF
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661 } |
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662 |
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663 context.ReadJson(siblingTags, siblingInstances.front()); |
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664 } |
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Creation of DICOM files with encapsulated PDF
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665 |
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666 |
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667 // Choose the same encoding as the parent resource |
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668 { |
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669 static const char* SPECIFIC_CHARACTER_SET = "0008,0005"; |
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add tags per instances in a series
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670 |
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671 if (siblingTags.isMember(SPECIFIC_CHARACTER_SET)) |
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add tags per instances in a series
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672 { |
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add tags per instances in a series
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673 Encoding encoding; |
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674 if (!siblingTags[SPECIFIC_CHARACTER_SET].isMember("Value") || |
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675 siblingTags[SPECIFIC_CHARACTER_SET]["Value"].type() != Json::stringValue || |
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676 !GetDicomEncoding(encoding, siblingTags[SPECIFIC_CHARACTER_SET]["Value"].asCString())) |
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add tags per instances in a series
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677 { |
1569 | 678 throw OrthancException("Unable to get the encoding of the parent resource"); |
1565
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679 } |
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add tags per instances in a series
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changeset
|
680 |
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add tags per instances in a series
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681 dicom.SetEncoding(encoding); |
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682 } |
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add tags per instances in a series
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683 } |
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add tags per instances in a series
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684 |
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add tags per instances in a series
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|
685 |
1555
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Creation of DICOM files with encapsulated PDF
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686 // Retrieve the tags for all the parent modules |
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Creation of DICOM files with encapsulated PDF
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687 typedef std::set<DicomTag> ModuleTags; |
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Creation of DICOM files with encapsulated PDF
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688 ModuleTags moduleTags; |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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689 |
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Creation of DICOM files with encapsulated PDF
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690 ResourceType type = parentType; |
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Creation of DICOM files with encapsulated PDF
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parents:
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691 for (;;) |
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Creation of DICOM files with encapsulated PDF
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692 { |
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Creation of DICOM files with encapsulated PDF
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693 DicomTag::AddTagsForModule(moduleTags, GetModule(type)); |
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Creation of DICOM files with encapsulated PDF
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694 |
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Creation of DICOM files with encapsulated PDF
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parents:
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|
695 if (type == ResourceType_Patient) |
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Creation of DICOM files with encapsulated PDF
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696 { |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
697 break; // We're done |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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698 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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|
699 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
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700 // Go up |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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701 std::string tmp; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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702 if (!context.GetIndex().LookupParent(tmp, parent)) |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
703 { |
1569 | 704 throw OrthancException(ErrorCode_InternalError); |
1555
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Creation of DICOM files with encapsulated PDF
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parents:
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705 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
706 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
707 parent = tmp; |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
708 type = GetParentResourceType(type); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
709 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
710 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
711 for (ModuleTags::const_iterator it = moduleTags.begin(); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
712 it != moduleTags.end(); it++) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
713 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
714 std::string t = it->Format(); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
715 if (siblingTags.isMember(t)) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
716 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
717 const Json::Value& tag = siblingTags[t]; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
718 if (tag["Type"] == "Null") |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
719 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
720 dicom.Replace(*it, ""); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
721 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
722 else if (tag["Type"] == "String") |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
723 { |
1557 | 724 std::string value = tag["Value"].asString(); |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
725 dicom.Replace(*it, Toolbox::ConvertFromUtf8(value, dicom.GetEncoding())); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
726 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
727 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
728 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
729 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
730 |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
731 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
732 // Inject time-related information |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
733 std::string date, time; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
734 Toolbox::GetNowDicom(date, time); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
735 dicom.Replace(DICOM_TAG_ACQUISITION_DATE, date); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
736 dicom.Replace(DICOM_TAG_ACQUISITION_TIME, time); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
737 dicom.Replace(DICOM_TAG_CONTENT_DATE, date); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
738 dicom.Replace(DICOM_TAG_CONTENT_TIME, time); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
739 dicom.Replace(DICOM_TAG_INSTANCE_CREATION_DATE, date); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
740 dicom.Replace(DICOM_TAG_INSTANCE_CREATION_TIME, time); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
741 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
742 if (parentType == ResourceType_Patient || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
743 parentType == ResourceType_Study || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
744 parentType == ResourceType_Instance /* no parent */) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
745 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
746 dicom.Replace(DICOM_TAG_SERIES_DATE, date); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
747 dicom.Replace(DICOM_TAG_SERIES_TIME, time); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
748 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
749 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
750 if (parentType == ResourceType_Patient || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
751 parentType == ResourceType_Instance /* no parent */) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
752 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
753 dicom.Replace(DICOM_TAG_STUDY_DATE, date); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
754 dicom.Replace(DICOM_TAG_STUDY_TIME, time); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
755 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
756 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
757 |
1569 | 758 InjectTags(dicom, request["Tags"]); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
759 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
760 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
761 // Inject the content (either an image, or a PDF file) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
762 if (request.isMember("Content")) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
763 { |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
764 const Json::Value& content = request["Content"]; |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
765 |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
766 if (content.type() == Json::stringValue) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
767 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
768 dicom.EmbedContent(request["Content"].asString()); |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
769 |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
770 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
771 else if (content.type() == Json::arrayValue) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
772 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
773 if (content.size() > 0) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
774 { |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
775 // Let's create a series instead of a single instance |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
776 CreateSeries(call, dicom, content); |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
777 return; |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
778 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
779 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
780 else |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
781 { |
1569 | 782 throw OrthancException("The payload of the DICOM instance must be specified according to Data URI scheme"); |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
783 return; |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
784 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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785 } |
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Creation of DICOM files with encapsulated PDF
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786 |
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787 std::string id; |
1569 | 788 StoreCreatedInstance(id, context, dicom); |
789 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success); | |
1555
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Creation of DICOM files with encapsulated PDF
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790 |
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791 return; |
1555
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Creation of DICOM files with encapsulated PDF
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792 } |
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Creation of DICOM files with encapsulated PDF
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793 |
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Creation of DICOM files with encapsulated PDF
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794 |
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795 static void CreateDicom(RestApiPostCall& call) |
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796 { |
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797 Json::Value request; |
1569 | 798 if (!call.ParseJsonRequest(request) || |
799 !request.isObject()) | |
1570 | 800 { |
801 throw OrthancException(ErrorCode_BadRequest); | |
802 } | |
1569 | 803 |
804 if (request.isMember("Tags")) | |
1570 | 805 { |
806 CreateDicomV2(call, request); | |
807 } | |
1569 | 808 else |
1570 | 809 { |
810 // Compatibility with Orthanc <= 0.9.3 | |
811 ServerContext& context = OrthancRestApi::GetContext(call); | |
812 ParsedDicomFile dicom; | |
813 CreateDicomV1(dicom, request); | |
1569 | 814 |
1570 | 815 std::string id; |
816 StoreCreatedInstance(id, context, dicom); | |
817 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success); | |
818 } | |
796
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819 } |
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820 |
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821 |
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822 void OrthancRestApi::RegisterAnonymizeModify() |
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823 { |
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824 Register("/instances/{id}/modify", ModifyInstance); |
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825 Register("/series/{id}/modify", ModifyResource<ChangeType_ModifiedSeries, ResourceType_Series>); |
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826 Register("/studies/{id}/modify", ModifyResource<ChangeType_ModifiedStudy, ResourceType_Study>); |
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827 Register("/patients/{id}/modify", ModifyResource<ChangeType_ModifiedPatient, ResourceType_Patient>); |
751
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828 |
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829 Register("/instances/{id}/anonymize", AnonymizeInstance); |
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830 Register("/series/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedSeries, ResourceType_Series>); |
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831 Register("/studies/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedStudy, ResourceType_Study>); |
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832 Register("/patients/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedPatient, ResourceType_Patient>); |
796
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833 |
1120
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834 Register("/tools/create-dicom", CreateDicom); |
751
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835 } |
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836 } |