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annotate OrthancServer/ParsedDicomFile.h @ 2367:2aff870c2c58

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refactoring of BoostConfiguration.cmake
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 22 Aug 2017 17:32:13 +0200
parents b7fba68747f6
children 96b3ec054b69
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017 Osimis, Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #pragma once
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35
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36 #include "../Core/DicomFormat/DicomInstanceHasher.h"
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37 #include "../Core/Images/ImageAccessor.h"
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38 #include "../Core/IDynamicObject.h"
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39 #include "../Core/RestApi/RestApiOutput.h"
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40 #include "../Core/Toolbox.h"
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41 #include "ServerEnumerations.h"
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42
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43 class DcmDataset;
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44 class DcmFileFormat;
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45
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46 namespace Orthanc
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47 {
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48 class ParsedDicomFile : public IDynamicObject
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49 {
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50 private:
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51 struct PImpl;
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52 PImpl* pimpl_;
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53
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54 ParsedDicomFile(ParsedDicomFile& other);
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56 void CreateFromDicomMap(const DicomMap& source,
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57 Encoding defaultEncoding);
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58
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59 void RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep);
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60
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61 void UpdateStorageUid(const DicomTag& tag,
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62 const std::string& value,
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63 bool decodeDataUriScheme);
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64
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65 void InvalidateCache();
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66
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67 bool EmbedContentInternal(const std::string& dataUriScheme);
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68
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69 public:
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70 ParsedDicomFile(bool createIdentifiers); // Create a minimal DICOM instance
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72 ParsedDicomFile(const DicomMap& map,
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73 Encoding defaultEncoding);
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74
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75 ParsedDicomFile(const DicomMap& map);
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76
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77 ParsedDicomFile(const void* content,
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78 size_t size);
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79
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80 ParsedDicomFile(const std::string& content);
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81
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82 ParsedDicomFile(DcmDataset& dicom);
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83
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84 ParsedDicomFile(DcmFileFormat& dicom);
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85
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86 ~ParsedDicomFile();
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87
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88 DcmFileFormat& GetDcmtkObject() const;
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89
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90 ParsedDicomFile* Clone();
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91
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92 void SendPathValue(RestApiOutput& output,
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93 const UriComponents& uri);
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94
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95 void Answer(RestApiOutput& output);
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96
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97 void Remove(const DicomTag& tag);
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98
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99 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization)
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100 void Clear(const DicomTag& tag,
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101 bool onlyIfExists);
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102
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103 void Replace(const DicomTag& tag,
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104 const std::string& utf8Value,
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105 bool decodeDataUriScheme,
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106 DicomReplaceMode mode);
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107
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108 void Replace(const DicomTag& tag,
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109 const Json::Value& value, // Assumed to be encoded with UTF-8
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110 bool decodeDataUriScheme,
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111 DicomReplaceMode mode);
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112
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113 void Insert(const DicomTag& tag,
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114 const Json::Value& value, // Assumed to be encoded with UTF-8
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115 bool decodeDataUriScheme);
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116
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117 void ReplacePlainString(const DicomTag& tag,
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118 const std::string& utf8Value)
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119 {
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120 Replace(tag, utf8Value, false, DicomReplaceMode_InsertIfAbsent);
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121 }
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122
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123 void RemovePrivateTags()
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124 {
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125 RemovePrivateTagsInternal(NULL);
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126 }
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127
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128 void RemovePrivateTags(const std::set<DicomTag>& toKeep)
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129 {
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130 RemovePrivateTagsInternal(&toKeep);
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131 }
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132
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133 // WARNING: This function handles the decoding of strings to UTF8
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134 bool GetTagValue(std::string& value,
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135 const DicomTag& tag);
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136
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137 DicomInstanceHasher GetHasher();
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138
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139 void SaveToMemoryBuffer(std::string& buffer);
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140
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141 void SaveToFile(const std::string& path);
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142
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143 void EmbedContent(const std::string& dataUriScheme);
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144
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145 void EmbedImage(const ImageAccessor& accessor);
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146
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147 void EmbedImage(const std::string& mime,
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148 const std::string& content);
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149
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150 Encoding GetEncoding() const;
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151
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152 // WARNING: This function only sets the encoding, it will not
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153 // convert the encoding of the tags. Use "ChangeEncoding()" if need be.
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154 void SetEncoding(Encoding encoding);
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155
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156 void DatasetToJson(Json::Value& target,
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157 DicomToJsonFormat format,
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158 DicomToJsonFlags flags,
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159 unsigned int maxStringLength);
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160
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161 // This version uses the default parameters for
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162 // FileContentType_DicomAsJson
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163 void DatasetToJson(Json::Value& target);
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164
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165 void HeaderToJson(Json::Value& target,
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166 DicomToJsonFormat format);
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167
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168 bool HasTag(const DicomTag& tag) const;
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169
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170 void EmbedPdf(const std::string& pdf);
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171
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172 bool ExtractPdf(std::string& pdf);
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173
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174 void GetRawFrame(std::string& target, // OUT
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175 std::string& mime, // OUT
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176 unsigned int frameId); // IN
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177
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178 unsigned int GetFramesCount() const;
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179
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180 static ParsedDicomFile* CreateFromJson(const Json::Value& value,
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181 DicomFromJsonFlags flags);
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182
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183 void ChangeEncoding(Encoding target);
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184
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185 void ExtractDicomSummary(DicomMap& target) const;
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186
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187 void ExtractDicomAsJson(Json::Value& target) const;
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188
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189 bool LookupTransferSyntax(std::string& result);
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190
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191 bool LookupPhotometricInterpretation(PhotometricInterpretation& result) const;
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192 };
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193 }