Mercurial > hg > orthanc

annotate OrthancServer/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 1689:26083d84d237

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refactoring
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 07 Oct 2015 16:54:05 +0200
parents 69f7822ee254
children 18c02c6987d5
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #include "../PrecompiledHeadersServer.h"
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34 #include "OrthancRestApi.h"
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35
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36 #include "../../Core/Logging.h"
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37 #include "../../Core/Uuid.h"
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38 #include "../FromDcmtkBridge.h"
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39 #include "../ServerContext.h"
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40 #include "../OrthancInitialization.h"
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41
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42 #include <boost/lexical_cast.hpp>
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43 #include <boost/algorithm/string/predicate.hpp>
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44
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45 namespace Orthanc
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46 {
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47 // Modification of DICOM instances ------------------------------------------
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48
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49 enum TagOperation
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50 {
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51 TagOperation_Keep,
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52 TagOperation_Remove
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53 };
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54
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55 static void ParseListOfTags(DicomModification& target,
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56 const Json::Value& query,
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57 TagOperation operation)
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58 {
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59 if (!query.isArray())
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60 {
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61 throw OrthancException(ErrorCode_BadRequest);
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62 }
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63
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64 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++)
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65 {
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66 std::string name = query[i].asString();
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67
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68 DicomTag tag = FromDcmtkBridge::ParseTag(name);
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69
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70 switch (operation)
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71 {
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72 case TagOperation_Keep:
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73 target.Keep(tag);
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74 VLOG(1) << "Keep: " << name << " " << tag << std::endl;
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75 break;
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76
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77 case TagOperation_Remove:
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78 target.Remove(tag);
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79 VLOG(1) << "Remove: " << name << " " << tag << std::endl;
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80 break;
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81
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82 default:
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83 throw OrthancException(ErrorCode_InternalError);
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84 }
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85 }
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86 }
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88
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89 static void ParseReplacements(DicomModification& target,
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90 const Json::Value& replacements)
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91 {
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92 if (!replacements.isObject())
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93 {
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94 throw OrthancException(ErrorCode_BadRequest);
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95 }
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96
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97 Json::Value::Members members = replacements.getMemberNames();
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98 for (size_t i = 0; i < members.size(); i++)
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99 {
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100 const std::string& name = members[i];
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101 std::string value = replacements[name].asString();
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102
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103 DicomTag tag = FromDcmtkBridge::ParseTag(name);
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104 target.Replace(tag, value);
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105
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106 VLOG(1) << "Replace: " << name << " " << tag << " == " << value << std::endl;
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107 }
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108 }
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109
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110
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111 static std::string GeneratePatientName(ServerContext& context)
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112 {
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113 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence);
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114 return "Anonymized" + boost::lexical_cast<std::string>(seq);
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115 }
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116
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117
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118
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119 bool OrthancRestApi::ParseModifyRequest(DicomModification& target,
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120 const Json::Value& request)
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121 {
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122 if (request.isObject())
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123 {
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124 if (request.isMember("RemovePrivateTags"))
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125 {
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126 target.SetRemovePrivateTags(true);
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127 }
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128
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129 if (request.isMember("Remove"))
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130 {
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131 ParseListOfTags(target, request["Remove"], TagOperation_Remove);
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132 }
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133
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134 if (request.isMember("Replace"))
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135 {
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136 ParseReplacements(target, request["Replace"]);
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137 }
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138
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139 return true;
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140 }
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141 else
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142 {
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143 return false;
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144 }
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145 }
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146
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147
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148 static bool ParseModifyRequest(DicomModification& target,
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149 const RestApiPostCall& call)
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150 {
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151 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"}}'
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152
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153 Json::Value request;
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154 if (call.ParseJsonRequest(request))
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155 {
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156 return OrthancRestApi::ParseModifyRequest(target, request);
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157 }
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158 else
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159 {
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160 return false;
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161 }
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162 }
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163
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164
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165 static bool ParseAnonymizationRequest(DicomModification& target,
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166 RestApiPostCall& call)
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167 {
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168 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null,"Remove":["Modality"]}' > Anonymized.dcm
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169
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170 target.SetupAnonymization();
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171 std::string patientName = target.GetReplacement(DICOM_TAG_PATIENT_NAME);
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172
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173 Json::Value request;
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174 if (call.ParseJsonRequest(request) && request.isObject())
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175 {
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176 if (request.isMember("KeepPrivateTags"))
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177 {
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178 target.SetRemovePrivateTags(false);
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179 }
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180
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181 if (request.isMember("Remove"))
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182 {
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183 ParseListOfTags(target, request["Remove"], TagOperation_Remove);
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184 }
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185
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186 if (request.isMember("Replace"))
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187 {
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188 ParseReplacements(target, request["Replace"]);
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189 }
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190
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191 if (request.isMember("Keep"))
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192 {
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193 ParseListOfTags(target, request["Keep"], TagOperation_Keep);
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194 }
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195
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196 if (target.IsReplaced(DICOM_TAG_PATIENT_NAME) &&
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197 target.GetReplacement(DICOM_TAG_PATIENT_NAME) == patientName)
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198 {
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199 // Overwrite the random Patient's Name by one that is more
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200 // user-friendly (provided none was specified by the user)
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201 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call)), true);
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202 }
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203
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204 return true;
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205 }
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206 else
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207 {
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208 return false;
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209 }
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210 }
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211
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212
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213 static void AnonymizeOrModifyInstance(DicomModification& modification,
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214 RestApiPostCall& call)
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215 {
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216 std::string id = call.GetUriComponent("id", "");
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217
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218 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id);
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219
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220 std::auto_ptr<ParsedDicomFile> modified(locker.GetDicom().Clone());
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221 modification.Apply(*modified);
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222 modified->Answer(call.GetOutput());
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223 }
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224
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225
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diff changeset
226 static void AnonymizeOrModifyResource(DicomModification& modification,
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227 MetadataType metadataType,
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228 ChangeType changeType,
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229 ResourceType resourceType,
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230 RestApiPostCall& call)
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231 {
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232 bool isFirst = true;
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233 Json::Value result(Json::objectValue);
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234
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235 ServerContext& context = OrthancRestApi::GetContext(call);
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236
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237 typedef std::list<std::string> Instances;
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238 Instances instances;
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239 std::string id = call.GetUriComponent("id", "");
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240 context.GetIndex().GetChildInstances(instances, id);
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241
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diff changeset
242 if (instances.empty())
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243 {
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244 return;
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245 }
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246
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diff changeset
247
751
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248 /**
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249 * Loop over all the instances of the resource.
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250 **/
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251
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252 for (Instances::const_iterator it = instances.begin();
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253 it != instances.end(); ++it)
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254 {
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255 LOG(INFO) << "Modifying instance " << *it;
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diff changeset
256
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diff changeset
257 std::auto_ptr<ServerContext::DicomCacheLocker> locker;
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diff changeset
258
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diff changeset
259 try
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diff changeset
260 {
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diff changeset
261 locker.reset(new ServerContext::DicomCacheLocker(OrthancRestApi::GetContext(call), *it));
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262 }
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diff changeset
263 catch (OrthancException&)
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diff changeset
264 {
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265 // This child instance has been removed in between
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266 continue;
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diff changeset
267 }
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diff changeset
268
1129
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diff changeset
269
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diff changeset
270 ParsedDicomFile& original = locker->GetDicom();
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271 DicomInstanceHasher originalHasher = original.GetHasher();
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272
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273
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diff changeset
274 /**
1002
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diff changeset
275 * Compute the resulting DICOM instance.
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276 **/
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277
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278 std::auto_ptr<ParsedDicomFile> modified(original.Clone());
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279 modification.Apply(*modified);
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280
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281 DicomInstanceToStore toStore;
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282 toStore.SetRestOrigin(call);
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283 toStore.SetParsedDicomFile(*modified);
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284
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285
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286 /**
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287 * Prepare the metadata information to associate with the
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288 * resulting DICOM instance (AnonymizedFrom/ModifiedFrom).
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289 **/
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290
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291 DicomInstanceHasher modifiedHasher = modified->GetHasher();
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292
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293 if (originalHasher.HashSeries() != modifiedHasher.HashSeries())
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294 {
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295 toStore.AddMetadata(ResourceType_Series, metadataType, originalHasher.HashSeries());
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296 }
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297
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298 if (originalHasher.HashStudy() != modifiedHasher.HashStudy())
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299 {
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300 toStore.AddMetadata(ResourceType_Study, metadataType, originalHasher.HashStudy());
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301 }
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302
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303 if (originalHasher.HashPatient() != modifiedHasher.HashPatient())
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304 {
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305 toStore.AddMetadata(ResourceType_Patient, metadataType, originalHasher.HashPatient());
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306 }
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307
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308 assert(*it == originalHasher.HashInstance());
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309 toStore.AddMetadata(ResourceType_Instance, metadataType, *it);
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310
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311
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312 /**
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313 * Store the resulting DICOM instance into the Orthanc store.
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314 **/
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315
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316 std::string modifiedInstance;
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317 if (context.Store(modifiedInstance, toStore) != StoreStatus_Success)
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318 {
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319 LOG(ERROR) << "Error while storing a modified instance " << *it;
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320 throw OrthancException(ErrorCode_CannotStoreInstance);
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321 }
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322
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323 // Sanity checks in debug mode
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324 assert(modifiedInstance == modifiedHasher.HashInstance());
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325
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326
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327 /**
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328 * Compute the JSON object that is returned by the REST call.
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329 **/
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330
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331 if (isFirst)
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332 {
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333 std::string newId;
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334
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335 switch (resourceType)
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336 {
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337 case ResourceType_Series:
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338 newId = modifiedHasher.HashSeries();
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339 break;
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340
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341 case ResourceType_Study:
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342 newId = modifiedHasher.HashStudy();
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343 break;
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344
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345 case ResourceType_Patient:
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346 newId = modifiedHasher.HashPatient();
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347 break;
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348
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349 default:
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350 throw OrthancException(ErrorCode_InternalError);
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351 }
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352
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353 result["Type"] = EnumerationToString(resourceType);
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354 result["ID"] = newId;
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355 result["Path"] = GetBasePath(resourceType, newId);
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356 result["PatientID"] = modifiedHasher.HashPatient();
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357 isFirst = false;
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358 }
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359 }
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360
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361 call.GetOutput().AnswerJson(result);
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362 }
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363
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364
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365
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366 static void ModifyInstance(RestApiPostCall& call)
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367 {
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368 DicomModification modification;
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369 modification.SetAllowManualIdentifiers(true);
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370
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371 if (ParseModifyRequest(modification, call))
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372 {
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373 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID))
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374 {
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375 modification.SetLevel(ResourceType_Patient);
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376 }
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377 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
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378 {
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379 modification.SetLevel(ResourceType_Study);
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380 }
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381 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
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382 {
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383 modification.SetLevel(ResourceType_Series);
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384 }
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385 else
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386 {
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387 modification.SetLevel(ResourceType_Instance);
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388 }
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389
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390 AnonymizeOrModifyInstance(modification, call);
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391 }
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392 }
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393
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diff changeset
394
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395 static void AnonymizeInstance(RestApiPostCall& call)
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396 {
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diff changeset
397 DicomModification modification;
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diff changeset
398 modification.SetAllowManualIdentifiers(true);
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399
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400 if (ParseAnonymizationRequest(modification, call))
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401 {
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diff changeset
402 AnonymizeOrModifyInstance(modification, call);
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403 }
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diff changeset
404 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
405
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
406
787
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diff changeset
407 template <enum ChangeType changeType,
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diff changeset
408 enum ResourceType resourceType>
974
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diff changeset
409 static void ModifyResource(RestApiPostCall& call)
751
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diff changeset
410 {
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diff changeset
411 DicomModification modification;
751
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diff changeset
412
787
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diff changeset
413 if (ParseModifyRequest(modification, call))
751
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diff changeset
414 {
796
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diff changeset
415 modification.SetLevel(resourceType);
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ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
416 AnonymizeOrModifyResource(modification, MetadataType_ModifiedFrom,
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
417 changeType, resourceType, call);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
419 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
420
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
422 template <enum ChangeType changeType,
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
423 enum ResourceType resourceType>
974
83622b0f544c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
424 static void AnonymizeResource(RestApiPostCall& call)
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425 {
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
426 DicomModification modification;
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
427
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
428 if (ParseAnonymizationRequest(modification, call))
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429 {
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
430 AnonymizeOrModifyResource(modification, MetadataType_AnonymizedFrom,
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
431 changeType, resourceType, call);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
432 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
433 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
434
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
435
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
436 static void StoreCreatedInstance(std::string& id /* out */,
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
437 RestApiPostCall& call,
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
438 ParsedDicomFile& dicom)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
439 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
440 DicomInstanceToStore toStore;
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
441 toStore.SetRestOrigin(call);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
442 toStore.SetParsedDicomFile(dicom);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
443
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
444 ServerContext& context = OrthancRestApi::GetContext(call);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
445 StoreStatus status = context.Store(id, toStore);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
446
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
447 if (status == StoreStatus_Failure)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
448 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
449 throw OrthancException(ErrorCode_CannotStoreInstance);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
450 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
451 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
452
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
453
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
454 static void CreateDicomV1(ParsedDicomFile& dicom,
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
455 RestApiPostCall& call,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
456 const Json::Value& request)
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
457 {
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
458 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}'
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 796
diff changeset
459 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}'
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
460
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
461 assert(request.isObject());
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
462 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom";
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
463
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
464 Json::Value::Members members = request.getMemberNames();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
465 for (size_t i = 0; i < members.size(); i++)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
466 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
467 const std::string& name = members[i];
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
468 if (request[name].type() != Json::stringValue)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
469 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
470 throw OrthancException(ErrorCode_CreateDicomNotString);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
471 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
472
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
473 std::string value = request[name].asString();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
474
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
475 DicomTag tag = FromDcmtkBridge::ParseTag(name);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
476 if (tag == DICOM_TAG_PIXEL_DATA)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
477 {
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
478 dicom.EmbedContent(value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
479 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
480 else
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
481 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
482 dicom.Replace(tag, value);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
483 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
484 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
485 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
486
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
487
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
488 static void InjectTags(ParsedDicomFile& dicom,
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
489 const Json::Value& tags,
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
490 bool decodeBinaryTags)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
491 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
492 if (tags.type() != Json::objectValue)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
493 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
494 throw OrthancException(ErrorCode_BadRequest);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
495 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
496
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
497 // Inject the user-specified tags
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
498 Json::Value::Members members = tags.getMemberNames();
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
499 for (size_t i = 0; i < members.size(); i++)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
500 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
501 const std::string& name = members[i];
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
502 if (tags[name].type() != Json::stringValue)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
503 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
504 throw OrthancException(ErrorCode_CreateDicomNotString);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
505 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
506
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
507 std::string value = tags[name].asString();
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
508 DicomTag tag = FromDcmtkBridge::ParseTag(name);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
509
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
510 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
511 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
512 if (tag != DICOM_TAG_PATIENT_ID &&
1640
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
513 tag != DICOM_TAG_ACQUISITION_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
514 tag != DICOM_TAG_ACQUISITION_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
515 tag != DICOM_TAG_CONTENT_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
516 tag != DICOM_TAG_CONTENT_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
517 tag != DICOM_TAG_INSTANCE_CREATION_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
518 tag != DICOM_TAG_INSTANCE_CREATION_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
519 tag != DICOM_TAG_SERIES_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
520 tag != DICOM_TAG_SERIES_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
521 tag != DICOM_TAG_STUDY_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
522 tag != DICOM_TAG_STUDY_TIME &&
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
523 dicom.HasTag(tag))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
524 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
525 throw OrthancException(ErrorCode_CreateDicomOverrideTag);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
526 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
527
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
528 if (tag == DICOM_TAG_PIXEL_DATA)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
529 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
530 throw OrthancException(ErrorCode_CreateDicomUseContent);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
531 }
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
532 else if (decodeBinaryTags &&
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
533 boost::starts_with(value, "data:application/octet-stream;base64,"))
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
534 {
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
535 std::string mime, binary;
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
536 Toolbox::DecodeDataUriScheme(mime, binary, value);
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
537 dicom.Replace(tag, binary);
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
538 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
539 else
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
540 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
541 dicom.Replace(tag, Toolbox::ConvertFromUtf8(value, dicom.GetEncoding()));
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
542 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
543 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
544 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
545 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
546
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
547
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
548 static void CreateSeries(RestApiPostCall& call,
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
549 ParsedDicomFile& base /* in */,
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
550 const Json::Value& content,
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
551 bool decodeBinaryTags)
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
552 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
553 assert(content.isArray());
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
554 assert(content.size() > 0);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
555 ServerContext& context = OrthancRestApi::GetContext(call);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
556
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
557 base.Replace(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size()));
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
558 base.Replace(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1");
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
559
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
560 std::string someInstance;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
561
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
562 try
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
563 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
564 for (Json::ArrayIndex i = 0; i < content.size(); i++)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
565 {
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
566 std::auto_ptr<ParsedDicomFile> dicom(base.Clone());
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
567 const Json::Value* payload = NULL;
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
568
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
569 if (content[i].type() == Json::stringValue)
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
570 {
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
571 payload = &content[i];
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
572 }
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
573 else if (content[i].type() == Json::objectValue)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
574 {
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
575 if (!content[i].isMember("Content"))
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
576 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
577 throw OrthancException(ErrorCode_CreateDicomNoPayload);
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
578 }
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
579
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
580 payload = &content[i]["Content"];
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
581
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
582 if (content[i].isMember("Tags"))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
583 {
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
584 InjectTags(*dicom, content[i]["Tags"], decodeBinaryTags);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
585 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
586 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
587
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
588 if (payload == NULL ||
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
589 payload->type() != Json::stringValue)
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
590 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
591 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme);
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
592 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
593
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
594 dicom->EmbedContent(payload->asString());
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
595 dicom->Replace(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1));
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
596 dicom->Replace(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1));
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
597
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
598 StoreCreatedInstance(someInstance, call, *dicom);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
599 }
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
600 }
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
601 catch (OrthancException&)
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
602 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
603 // Error: Remove the newly-created series
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
604
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
605 std::string series;
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
606 if (context.GetIndex().LookupParent(series, someInstance))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
607 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
608 Json::Value dummy;
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
609 context.GetIndex().DeleteResource(dummy, series, ResourceType_Series);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
610 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
611
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
612 throw;
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
613 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
614
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
615 std::string series;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
616 if (context.GetIndex().LookupParent(series, someInstance))
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
617 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
618 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
619 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
620 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
621
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
622
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
623 static void CreateDicomV2(RestApiPostCall& call,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
624 const Json::Value& request)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
625 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
626 assert(request.isObject());
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
627 ServerContext& context = OrthancRestApi::GetContext(call);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
628
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
629 if (!request.isMember("Tags") ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
630 request["Tags"].type() != Json::objectValue)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
631 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
632 throw OrthancException(ErrorCode_BadRequest);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
633 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
634
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
635 ParsedDicomFile dicom;
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
636
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
637 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
638 Encoding encoding;
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
639
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
640 if (request["Tags"].isMember("SpecificCharacterSet"))
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
641 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
642 const char* tmp = request["Tags"]["SpecificCharacterSet"].asCString();
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
643 if (!GetDicomEncoding(encoding, tmp))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
644 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
645 LOG(ERROR) << "Unknown specific character set: " << std::string(tmp);
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
646 throw OrthancException(ErrorCode_ParameterOutOfRange);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
647 }
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
648 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
649 else
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
650 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
651 std::string tmp = Configuration::GetGlobalStringParameter("DefaultEncoding", "Latin1");
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
652 encoding = StringToEncoding(tmp.c_str());
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
653 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
654
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
655 dicom.SetEncoding(encoding);
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
656 }
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
657
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
658 ResourceType parentType = ResourceType_Instance;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
659
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
660 if (request.isMember("Parent"))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
661 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
662 // Locate the parent tags
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
663 std::string parent = request["Parent"].asString();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
664 if (!context.GetIndex().LookupResourceType(parentType, parent))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
665 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
666 throw OrthancException(ErrorCode_CreateDicomBadParent);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
667 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
668
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
669 if (parentType == ResourceType_Instance)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
670 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
671 throw OrthancException(ErrorCode_CreateDicomParentIsInstance);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
672 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
673
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
674 // Select one existing child instance of the parent resource, to
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
675 // retrieve all its tags
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
676 Json::Value siblingTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
677
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
678 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
679 // Retrieve all the instances of the parent resource
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
680 std::list<std::string> siblingInstances;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
681 context.GetIndex().GetChildInstances(siblingInstances, parent);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
682
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
683 if (siblingInstances.empty())
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
684 {
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
685 // Error: No instance (should never happen)
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
686 throw OrthancException(ErrorCode_InternalError);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
687 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
688
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
689 context.ReadJson(siblingTags, siblingInstances.front());
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
690 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
691
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
692
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
693 // Choose the same encoding as the parent resource
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
694 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
695 static const char* SPECIFIC_CHARACTER_SET = "0008,0005";
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
696
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
697 if (siblingTags.isMember(SPECIFIC_CHARACTER_SET))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
698 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
699 Encoding encoding;
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
700 if (!siblingTags[SPECIFIC_CHARACTER_SET].isMember("Value") ||
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
701 siblingTags[SPECIFIC_CHARACTER_SET]["Value"].type() != Json::stringValue ||
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
702 !GetDicomEncoding(encoding, siblingTags[SPECIFIC_CHARACTER_SET]["Value"].asCString()))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
703 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
704 throw OrthancException(ErrorCode_CreateDicomParentEncoding);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
705 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
706
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
707 dicom.SetEncoding(encoding);
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
708 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
709 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
710
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
711
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
712 // Retrieve the tags for all the parent modules
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
713 typedef std::set<DicomTag> ModuleTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
714 ModuleTags moduleTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
715
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
716 ResourceType type = parentType;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
717 for (;;)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
718 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
719 DicomTag::AddTagsForModule(moduleTags, GetModule(type));
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
720
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
721 if (type == ResourceType_Patient)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
722 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
723 break; // We're done
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
724 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
725
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
726 // Go up
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
727 std::string tmp;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
728 if (!context.GetIndex().LookupParent(tmp, parent))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
729 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
730 throw OrthancException(ErrorCode_InternalError);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
731 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
732
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
733 parent = tmp;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
734 type = GetParentResourceType(type);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
735 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
736
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
737 for (ModuleTags::const_iterator it = moduleTags.begin();
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
738 it != moduleTags.end(); ++it)
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
739 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
740 std::string t = it->Format();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
741 if (siblingTags.isMember(t))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
742 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
743 const Json::Value& tag = siblingTags[t];
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
744 if (tag["Type"] == "Null")
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
745 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
746 dicom.Replace(*it, "");
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
747 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
748 else if (tag["Type"] == "String")
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
749 {
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
750 std::string value = tag["Value"].asString();
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
751 dicom.Replace(*it, Toolbox::ConvertFromUtf8(value, dicom.GetEncoding()));
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
752 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
753 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
754 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
755 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
756
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
757
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
758 bool decodeBinaryTags = true;
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
759 if (request.isMember("InterpretBinaryTags"))
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
760 {
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
761 const Json::Value& v = request["InterpretBinaryTags"];
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
762 if (v.type() != Json::booleanValue)
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
763 {
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
764 throw OrthancException(ErrorCode_BadRequest);
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
765 }
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
766
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
767 decodeBinaryTags = v.asBool();
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
768 }
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
769
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
770
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
771 // Inject time-related information
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
772 std::string date, time;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
773 Toolbox::GetNowDicom(date, time);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
774 dicom.Replace(DICOM_TAG_ACQUISITION_DATE, date);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
775 dicom.Replace(DICOM_TAG_ACQUISITION_TIME, time);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
776 dicom.Replace(DICOM_TAG_CONTENT_DATE, date);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
777 dicom.Replace(DICOM_TAG_CONTENT_TIME, time);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
778 dicom.Replace(DICOM_TAG_INSTANCE_CREATION_DATE, date);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
779 dicom.Replace(DICOM_TAG_INSTANCE_CREATION_TIME, time);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
780
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
781 if (parentType == ResourceType_Patient ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
782 parentType == ResourceType_Study ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
783 parentType == ResourceType_Instance /* no parent */)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
784 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
785 dicom.Replace(DICOM_TAG_SERIES_DATE, date);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
786 dicom.Replace(DICOM_TAG_SERIES_TIME, time);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
787 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
788
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
789 if (parentType == ResourceType_Patient ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
790 parentType == ResourceType_Instance /* no parent */)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
791 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
792 dicom.Replace(DICOM_TAG_STUDY_DATE, date);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
793 dicom.Replace(DICOM_TAG_STUDY_TIME, time);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
794 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
795
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
796
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
797 InjectTags(dicom, request["Tags"], decodeBinaryTags);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
798
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
799
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
800 // Inject the content (either an image, or a PDF file)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
801 if (request.isMember("Content"))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
802 {
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
803 const Json::Value& content = request["Content"];
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
804
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
805 if (content.type() == Json::stringValue)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
806 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
807 dicom.EmbedContent(request["Content"].asString());
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
808
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
809 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
810 else if (content.type() == Json::arrayValue)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
811 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
812 if (content.size() > 0)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
813 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
814 // Let's create a series instead of a single instance
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
815 CreateSeries(call, dicom, content, decodeBinaryTags);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
816 return;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
817 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
818 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
819 else
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
820 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
821 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
822 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
823 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
824
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
825 std::string id;
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
826 StoreCreatedInstance(id, call, dicom);
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
827 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
828
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
829 return;
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
830 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
831
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
832
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
833 static void CreateDicom(RestApiPostCall& call)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
834 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
835 Json::Value request;
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
836 if (!call.ParseJsonRequest(request) ||
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
837 !request.isObject())
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
838 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
839 throw OrthancException(ErrorCode_BadRequest);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
840 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
841
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
842 if (request.isMember("Tags"))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
843 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
844 CreateDicomV2(call, request);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
845 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
846 else
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
847 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
848 // Compatibility with Orthanc <= 0.9.3
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
849 ParsedDicomFile dicom;
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
850 CreateDicomV1(dicom, call, request);
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
851
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
852 std::string id;
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
853 StoreCreatedInstance(id, call, dicom);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
854 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
855 }
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
856 }
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
857
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
858
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
859 void OrthancRestApi::RegisterAnonymizeModify()
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
860 {
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
861 Register("/instances/{id}/modify", ModifyInstance);
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
862 Register("/series/{id}/modify", ModifyResource<ChangeType_ModifiedSeries, ResourceType_Series>);
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
863 Register("/studies/{id}/modify", ModifyResource<ChangeType_ModifiedStudy, ResourceType_Study>);
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
864 Register("/patients/{id}/modify", ModifyResource<ChangeType_ModifiedPatient, ResourceType_Patient>);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
865
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
866 Register("/instances/{id}/anonymize", AnonymizeInstance);
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
867 Register("/series/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedSeries, ResourceType_Series>);
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
868 Register("/studies/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedStudy, ResourceType_Study>);
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
869 Register("/patients/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedPatient, ResourceType_Patient>);
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
870
1120
009dce4ea2f6 /tools/create-dicom now accepts PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1010
diff changeset
871 Register("/tools/create-dicom", CreateDicom);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
872 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
873 }