Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi.cpp @ 302:238134081136
modification of dicom files
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 18 Dec 2012 17:29:30 +0100 |
parents | f13eef8ce651 |
children | c76a35a85c69 |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012 Medical Physics Department, CHU of Liege, |
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4 * Belgium |
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5 * |
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6 * This program is free software: you can redistribute it and/or |
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7 * modify it under the terms of the GNU General Public License as |
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8 * published by the Free Software Foundation, either version 3 of the |
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9 * License, or (at your option) any later version. |
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10 * |
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11 * In addition, as a special exception, the copyright holders of this |
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12 * program give permission to link the code of its release with the |
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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14 * that use the same license as the "OpenSSL" library), and distribute |
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15 * the linked executables. You must obey the GNU General Public License |
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16 * in all respects for all of the code used other than "OpenSSL". If you |
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17 * modify file(s) with this exception, you may extend this exception to |
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18 * your version of the file(s), but you are not obligated to do so. If |
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19 * you do not wish to do so, delete this exception statement from your |
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20 * version. If you delete this exception statement from all source files |
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21 * in the program, then also delete it here. |
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22 * |
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23 * This program is distributed in the hope that it will be useful, but |
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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26 * General Public License for more details. |
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27 * |
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28 * You should have received a copy of the GNU General Public License |
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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30 **/ |
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31 |
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32 |
230 | 33 #include "OrthancRestApi.h" |
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34 |
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35 #include "../Core/HttpServer/FilesystemHttpSender.h" |
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36 #include "../Core/Uuid.h" |
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37 #include "../Core/Compression/HierarchicalZipWriter.h" |
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38 #include "DicomProtocol/DicomUserConnection.h" |
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39 #include "FromDcmtkBridge.h" |
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40 #include "OrthancInitialization.h" |
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41 #include "ServerToolbox.h" |
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42 |
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43 #include <dcmtk/dcmdata/dcistrmb.h> |
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44 #include <dcmtk/dcmdata/dcfilefo.h> |
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45 #include <boost/lexical_cast.hpp> |
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46 #include <glog/logging.h> |
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47 |
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48 |
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49 #define RETRIEVE_CONTEXT(call) \ |
230 | 50 OrthancRestApi& contextApi = \ |
51 dynamic_cast<OrthancRestApi&>(call.GetContext()); \ | |
225 | 52 ServerContext& context = contextApi.GetContext() |
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53 |
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54 #define RETRIEVE_MODALITIES(call) \ |
230 | 55 const OrthancRestApi::Modalities& modalities = \ |
56 dynamic_cast<OrthancRestApi&>(call.GetContext()).GetModalities(); | |
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57 |
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58 |
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59 |
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60 namespace Orthanc |
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61 { |
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62 // DICOM SCU ---------------------------------------------------------------- |
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63 |
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64 static void ConnectToModality(DicomUserConnection& connection, |
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65 const std::string& name) |
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66 { |
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67 std::string aet, address; |
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68 int port; |
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69 GetDicomModality(name, aet, address, port); |
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70 connection.SetLocalApplicationEntityTitle(GetGlobalStringParameter("DicomAet", "ORTHANC")); |
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71 connection.SetDistantApplicationEntityTitle(aet); |
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72 connection.SetDistantHost(address); |
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73 connection.SetDistantPort(port); |
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74 connection.Open(); |
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75 } |
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76 |
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77 static bool MergeQueryAndTemplate(DicomMap& result, |
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78 const std::string& postData) |
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79 { |
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80 Json::Value query; |
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81 Json::Reader reader; |
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82 |
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83 if (!reader.parse(postData, query) || |
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84 query.type() != Json::objectValue) |
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85 { |
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86 return false; |
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87 } |
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88 |
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89 Json::Value::Members members = query.getMemberNames(); |
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90 for (size_t i = 0; i < members.size(); i++) |
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91 { |
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92 DicomTag t = FromDcmtkBridge::FindTag(members[i]); |
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93 result.SetValue(t, query[members[i]].asString()); |
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94 } |
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95 |
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96 return true; |
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97 } |
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98 |
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99 static void DicomFindPatient(RestApi::PostCall& call) |
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100 { |
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101 DicomMap m; |
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102 DicomMap::SetupFindPatientTemplate(m); |
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103 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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104 { |
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105 return; |
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106 } |
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107 |
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108 DicomUserConnection connection; |
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109 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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110 |
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111 DicomFindAnswers answers; |
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112 connection.FindPatient(answers, m); |
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113 |
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114 Json::Value result; |
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115 answers.ToJson(result); |
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116 call.GetOutput().AnswerJson(result); |
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117 } |
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118 |
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119 static void DicomFindStudy(RestApi::PostCall& call) |
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120 { |
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121 DicomMap m; |
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122 DicomMap::SetupFindStudyTemplate(m); |
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123 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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124 { |
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125 return; |
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126 } |
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127 |
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128 if (m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 && |
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129 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) |
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130 { |
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131 return; |
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132 } |
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133 |
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134 DicomUserConnection connection; |
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135 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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136 |
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137 DicomFindAnswers answers; |
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138 connection.FindStudy(answers, m); |
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139 |
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140 Json::Value result; |
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141 answers.ToJson(result); |
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142 call.GetOutput().AnswerJson(result); |
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143 } |
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144 |
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145 static void DicomFindSeries(RestApi::PostCall& call) |
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146 { |
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147 DicomMap m; |
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148 DicomMap::SetupFindSeriesTemplate(m); |
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149 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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150 { |
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151 return; |
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152 } |
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153 |
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154 if ((m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 && |
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155 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) || |
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156 m.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString().size() <= 2) |
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157 { |
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158 return; |
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159 } |
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160 |
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161 DicomUserConnection connection; |
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162 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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163 |
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164 DicomFindAnswers answers; |
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165 connection.FindSeries(answers, m); |
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166 |
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167 Json::Value result; |
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168 answers.ToJson(result); |
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169 call.GetOutput().AnswerJson(result); |
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170 } |
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171 |
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172 static void DicomFind(RestApi::PostCall& call) |
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173 { |
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174 DicomMap m; |
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175 DicomMap::SetupFindPatientTemplate(m); |
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176 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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177 { |
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178 return; |
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179 } |
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180 |
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181 DicomUserConnection connection; |
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182 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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183 |
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184 DicomFindAnswers patients; |
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185 connection.FindPatient(patients, m); |
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186 |
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187 // Loop over the found patients |
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188 Json::Value result = Json::arrayValue; |
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189 for (size_t i = 0; i < patients.GetSize(); i++) |
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190 { |
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191 Json::Value patient(Json::objectValue); |
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192 FromDcmtkBridge::ToJson(patient, patients.GetAnswer(i)); |
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193 |
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194 DicomMap::SetupFindStudyTemplate(m); |
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195 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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196 { |
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197 return; |
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198 } |
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199 m.CopyTagIfExists(patients.GetAnswer(i), DICOM_TAG_PATIENT_ID); |
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200 |
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201 DicomFindAnswers studies; |
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202 connection.FindStudy(studies, m); |
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203 |
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204 patient["Studies"] = Json::arrayValue; |
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205 |
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206 // Loop over the found studies |
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207 for (size_t j = 0; j < studies.GetSize(); j++) |
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208 { |
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209 Json::Value study(Json::objectValue); |
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210 FromDcmtkBridge::ToJson(study, studies.GetAnswer(j)); |
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211 |
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212 DicomMap::SetupFindSeriesTemplate(m); |
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213 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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214 { |
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215 return; |
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216 } |
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217 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_PATIENT_ID); |
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218 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_STUDY_INSTANCE_UID); |
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219 |
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220 DicomFindAnswers series; |
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221 connection.FindSeries(series, m); |
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222 |
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223 // Loop over the found series |
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224 study["Series"] = Json::arrayValue; |
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225 for (size_t k = 0; k < series.GetSize(); k++) |
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226 { |
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227 Json::Value series2(Json::objectValue); |
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228 FromDcmtkBridge::ToJson(series2, series.GetAnswer(k)); |
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229 study["Series"].append(series2); |
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230 } |
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231 |
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232 patient["Studies"].append(study); |
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233 } |
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234 |
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235 result.append(patient); |
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236 } |
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237 |
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238 call.GetOutput().AnswerJson(result); |
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239 } |
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240 |
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241 |
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242 static void DicomStore(RestApi::PostCall& call) |
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243 { |
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244 RETRIEVE_CONTEXT(call); |
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245 |
231 | 246 std::string remote = call.GetUriComponent("id", ""); |
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247 DicomUserConnection connection; |
231 | 248 ConnectToModality(connection, remote); |
249 | |
250 const std::string& resourceId = call.GetPostBody(); | |
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251 |
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252 Json::Value found; |
231 | 253 if (context.GetIndex().LookupResource(found, resourceId, ResourceType_Series)) |
227
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254 { |
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255 // The UUID corresponds to a series |
231 | 256 context.GetIndex().LogExportedResource(resourceId, remote); |
257 | |
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258 for (Json::Value::ArrayIndex i = 0; i < found["Instances"].size(); i++) |
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259 { |
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260 std::string instanceId = found["Instances"][i].asString(); |
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261 std::string dicom; |
233 | 262 context.ReadFile(dicom, instanceId, FileContentType_Dicom); |
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263 connection.Store(dicom); |
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264 } |
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265 |
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266 call.GetOutput().AnswerBuffer("{}", "application/json"); |
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267 } |
231 | 268 else if (context.GetIndex().LookupResource(found, resourceId, ResourceType_Instance)) |
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269 { |
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270 // The UUID corresponds to an instance |
231 | 271 context.GetIndex().LogExportedResource(resourceId, remote); |
272 | |
227
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273 std::string dicom; |
233 | 274 context.ReadFile(dicom, resourceId, FileContentType_Dicom); |
227
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275 connection.Store(dicom); |
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276 |
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277 call.GetOutput().AnswerBuffer("{}", "application/json"); |
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278 } |
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279 else |
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280 { |
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281 // The POST body is not a known resource, assume that it |
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282 // contains a raw DICOM instance |
231 | 283 connection.Store(resourceId); |
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284 call.GetOutput().AnswerBuffer("{}", "application/json"); |
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285 } |
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286 } |
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287 |
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288 |
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289 |
210
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290 // System information ------------------------------------------------------- |
211 | 291 |
292 static void ServeRoot(RestApi::GetCall& call) | |
293 { | |
294 call.GetOutput().Redirect("app/explorer.html"); | |
295 } | |
210
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296 |
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297 static void GetSystemInformation(RestApi::GetCall& call) |
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298 { |
238 | 299 Json::Value result = Json::objectValue; |
210
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300 |
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301 result["Version"] = ORTHANC_VERSION; |
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302 result["Name"] = GetGlobalStringParameter("Name", ""); |
238 | 303 |
304 call.GetOutput().AnswerJson(result); | |
305 } | |
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306 |
238 | 307 static void GetStatistics(RestApi::GetCall& call) |
308 { | |
309 RETRIEVE_CONTEXT(call); | |
310 Json::Value result = Json::objectValue; | |
311 context.GetIndex().ComputeStatistics(result); | |
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312 call.GetOutput().AnswerJson(result); |
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313 } |
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314 |
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315 |
211 | 316 // List all the patients, studies, series or instances ---------------------- |
317 | |
318 template <enum ResourceType resourceType> | |
319 static void ListResources(RestApi::GetCall& call) | |
320 { | |
321 RETRIEVE_CONTEXT(call); | |
322 | |
323 Json::Value result; | |
324 context.GetIndex().GetAllUuids(result, resourceType); | |
325 call.GetOutput().AnswerJson(result); | |
326 } | |
327 | |
212 | 328 template <enum ResourceType resourceType> |
329 static void GetSingleResource(RestApi::GetCall& call) | |
330 { | |
331 RETRIEVE_CONTEXT(call); | |
332 | |
333 Json::Value result; | |
334 if (context.GetIndex().LookupResource(result, call.GetUriComponent("id", ""), resourceType)) | |
335 { | |
336 call.GetOutput().AnswerJson(result); | |
337 } | |
338 } | |
339 | |
340 template <enum ResourceType resourceType> | |
341 static void DeleteSingleResource(RestApi::DeleteCall& call) | |
342 { | |
343 RETRIEVE_CONTEXT(call); | |
344 | |
345 Json::Value result; | |
346 if (context.GetIndex().DeleteResource(result, call.GetUriComponent("id", ""), resourceType)) | |
347 { | |
348 call.GetOutput().AnswerJson(result); | |
349 } | |
350 } | |
351 | |
211 | 352 |
248
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353 // Download of ZIP files ---------------------------------------------------- |
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354 |
250
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355 |
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356 static std::string GetDirectoryNameInArchive(const Json::Value& resource, |
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357 ResourceType resourceType) |
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358 { |
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359 switch (resourceType) |
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360 { |
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361 case ResourceType_Patient: |
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362 { |
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363 std::string p = resource["MainDicomTags"]["PatientID"].asString(); |
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364 std::string n = resource["MainDicomTags"]["PatientName"].asString(); |
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365 return p + " " + n; |
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366 } |
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367 |
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368 case ResourceType_Study: |
253 | 369 { |
250
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370 return resource["MainDicomTags"]["StudyDescription"].asString(); |
253 | 371 } |
250
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372 |
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373 case ResourceType_Series: |
253 | 374 { |
375 std::string d = resource["MainDicomTags"]["SeriesDescription"].asString(); | |
376 std::string m = resource["MainDicomTags"]["Modality"].asString(); | |
377 return m + " " + d; | |
378 } | |
250
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379 |
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380 default: |
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381 throw OrthancException(ErrorCode_InternalError); |
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382 } |
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383 } |
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384 |
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385 static bool CreateRootDirectoryInArchive(HierarchicalZipWriter& writer, |
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386 ServerContext& context, |
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387 const Json::Value& resource, |
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388 ResourceType resourceType) |
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389 { |
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390 if (resourceType == ResourceType_Patient) |
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391 { |
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392 return true; |
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393 } |
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394 |
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395 ResourceType parentType = GetParentResourceType(resourceType); |
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396 Json::Value parent; |
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397 |
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398 switch (resourceType) |
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399 { |
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400 case ResourceType_Study: |
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401 { |
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402 if (!context.GetIndex().LookupResource(parent, resource["ParentPatient"].asString(), parentType)) |
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403 { |
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404 return false; |
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405 } |
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406 |
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407 break; |
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408 } |
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409 |
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410 case ResourceType_Series: |
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411 if (!context.GetIndex().LookupResource(parent, resource["ParentStudy"].asString(), parentType) || |
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412 !CreateRootDirectoryInArchive(writer, context, parent, parentType)) |
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413 { |
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414 return false; |
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415 } |
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416 break; |
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417 |
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418 default: |
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419 throw OrthancException(ErrorCode_NotImplemented); |
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420 } |
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421 |
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422 writer.OpenDirectory(GetDirectoryNameInArchive(parent, parentType).c_str()); |
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423 return true; |
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424 } |
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425 |
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426 static bool ArchiveInstance(HierarchicalZipWriter& writer, |
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427 ServerContext& context, |
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428 const std::string& instancePublicId) |
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429 { |
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430 Json::Value instance; |
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431 if (!context.GetIndex().LookupResource(instance, instancePublicId, ResourceType_Instance)) |
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432 { |
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433 return false; |
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434 } |
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435 |
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436 std::string filename = instance["MainDicomTags"]["SOPInstanceUID"].asString() + ".dcm"; |
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437 writer.OpenFile(filename.c_str()); |
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438 |
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439 std::string dicom; |
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440 context.ReadFile(dicom, instancePublicId, FileContentType_Dicom); |
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441 writer.Write(dicom); |
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442 |
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443 return true; |
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444 } |
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445 |
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446 static bool ArchiveInternal(HierarchicalZipWriter& writer, |
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447 ServerContext& context, |
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448 const std::string& publicId, |
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449 ResourceType resourceType, |
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450 bool isFirstLevel) |
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451 { |
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452 Json::Value resource; |
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453 if (!context.GetIndex().LookupResource(resource, publicId, resourceType)) |
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454 { |
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455 return false; |
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456 } |
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457 |
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458 if (isFirstLevel && |
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459 !CreateRootDirectoryInArchive(writer, context, resource, resourceType)) |
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460 { |
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461 return false; |
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462 } |
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463 |
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464 writer.OpenDirectory(GetDirectoryNameInArchive(resource, resourceType).c_str()); |
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465 |
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466 switch (resourceType) |
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467 { |
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468 case ResourceType_Patient: |
299 | 469 for (Json::Value::ArrayIndex i = 0; i < resource["Studies"].size(); i++) |
250
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470 { |
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471 std::string studyId = resource["Studies"][i].asString(); |
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472 if (!ArchiveInternal(writer, context, studyId, ResourceType_Study, false)) |
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473 { |
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474 return false; |
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475 } |
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476 } |
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477 break; |
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478 |
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479 case ResourceType_Study: |
299 | 480 for (Json::Value::ArrayIndex i = 0; i < resource["Series"].size(); i++) |
250
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481 { |
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482 std::string seriesId = resource["Series"][i].asString(); |
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483 if (!ArchiveInternal(writer, context, seriesId, ResourceType_Series, false)) |
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484 { |
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485 return false; |
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486 } |
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487 } |
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488 break; |
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489 |
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490 case ResourceType_Series: |
299 | 491 for (Json::Value::ArrayIndex i = 0; i < resource["Instances"].size(); i++) |
250
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492 { |
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493 if (!ArchiveInstance(writer, context, resource["Instances"][i].asString())) |
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494 { |
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495 return false; |
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496 } |
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497 } |
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498 break; |
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499 |
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500 default: |
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501 throw OrthancException(ErrorCode_InternalError); |
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502 } |
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503 |
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504 writer.CloseDirectory(); |
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505 return true; |
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506 } |
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507 |
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508 template <enum ResourceType resourceType> |
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509 static void GetArchive(RestApi::GetCall& call) |
248
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510 { |
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511 RETRIEVE_CONTEXT(call); |
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512 |
250
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513 // Create a RAII for the temporary file to manage the ZIP file |
248
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514 Toolbox::TemporaryFile tmp; |
250
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515 std::string id = call.GetUriComponent("id", ""); |
248
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516 |
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517 { |
250
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518 // Create a ZIP writer |
248
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519 HierarchicalZipWriter writer(tmp.GetPath().c_str()); |
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520 |
250
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521 // Store the requested resource into the ZIP |
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522 if (!ArchiveInternal(writer, context, id, resourceType, true)) |
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523 { |
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524 return; |
248
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525 } |
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526 } |
250
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527 |
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528 // Prepare the sending of the ZIP file |
248
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529 FilesystemHttpSender sender(tmp.GetPath().c_str()); |
250
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530 sender.SetContentType("application/zip"); |
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531 sender.SetDownloadFilename(id + ".zip"); |
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532 |
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533 // Send the ZIP |
248
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534 call.GetOutput().AnswerFile(sender); |
250
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535 |
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536 // The temporary file is automatically removed thanks to the RAII |
248
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537 } |
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538 |
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539 |
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540 // Changes API -------------------------------------------------------------- |
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541 |
231 | 542 static void GetSinceAndLimit(int64_t& since, |
543 unsigned int& limit, | |
237
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544 bool& last, |
231 | 545 const RestApi::GetCall& call) |
210
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546 { |
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547 static const unsigned int MAX_RESULTS = 100; |
237
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548 |
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549 if (call.HasArgument("last")) |
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550 { |
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551 last = true; |
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552 return; |
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553 } |
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554 |
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555 last = false; |
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556 |
210
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557 try |
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558 { |
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559 since = boost::lexical_cast<int64_t>(call.GetArgument("since", "0")); |
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560 limit = boost::lexical_cast<unsigned int>(call.GetArgument("limit", "0")); |
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561 } |
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562 catch (boost::bad_lexical_cast) |
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563 { |
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564 return; |
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565 } |
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566 |
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567 if (limit == 0 || limit > MAX_RESULTS) |
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568 { |
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569 limit = MAX_RESULTS; |
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570 } |
231 | 571 } |
572 | |
573 static void GetChanges(RestApi::GetCall& call) | |
574 { | |
575 RETRIEVE_CONTEXT(call); | |
576 | |
577 //std::string filter = GetArgument(getArguments, "filter", ""); | |
578 int64_t since; | |
579 unsigned int limit; | |
237
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580 bool last; |
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581 GetSinceAndLimit(since, limit, last, call); |
210
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582 |
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583 Json::Value result; |
237
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584 if ((!last && context.GetIndex().GetChanges(result, since, limit)) || |
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585 ( last && context.GetIndex().GetLastChange(result))) |
210
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586 { |
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587 call.GetOutput().AnswerJson(result); |
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588 } |
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589 } |
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590 |
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591 |
231 | 592 static void GetExports(RestApi::GetCall& call) |
593 { | |
594 RETRIEVE_CONTEXT(call); | |
595 | |
596 int64_t since; | |
597 unsigned int limit; | |
237
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598 bool last; |
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599 GetSinceAndLimit(since, limit, last, call); |
231 | 600 |
601 Json::Value result; | |
237
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602 if ((!last && context.GetIndex().GetExportedResources(result, since, limit)) || |
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603 ( last && context.GetIndex().GetLastExportedResource(result))) |
231 | 604 { |
605 call.GetOutput().AnswerJson(result); | |
606 } | |
607 } | |
608 | |
210
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609 |
272
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610 // Get information about a single patient ----------------------------------- |
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611 |
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612 static void IsProtectedPatient(RestApi::GetCall& call) |
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613 { |
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614 RETRIEVE_CONTEXT(call); |
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615 std::string publicId = call.GetUriComponent("id", ""); |
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616 bool isProtected = context.GetIndex().IsProtectedPatient(publicId); |
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617 call.GetOutput().AnswerBuffer(isProtected ? "1" : "0", "text/plain"); |
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618 } |
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619 |
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620 |
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621 static void SetPatientProtection(RestApi::PutCall& call) |
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622 { |
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623 RETRIEVE_CONTEXT(call); |
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624 std::string publicId = call.GetUriComponent("id", ""); |
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625 std::string s = Toolbox::StripSpaces(call.GetPutBody()); |
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626 |
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627 if (s == "0") |
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628 { |
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629 context.GetIndex().SetProtectedPatient(publicId, false); |
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630 call.GetOutput().AnswerBuffer("", "text/plain"); |
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631 } |
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632 else if (s == "1") |
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633 { |
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634 context.GetIndex().SetProtectedPatient(publicId, true); |
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635 call.GetOutput().AnswerBuffer("", "text/plain"); |
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636 } |
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637 else |
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638 { |
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639 // Bad request |
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640 } |
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641 } |
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642 |
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643 |
213
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644 // Get information about a single instance ---------------------------------- |
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645 |
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646 static void GetInstanceFile(RestApi::GetCall& call) |
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647 { |
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648 RETRIEVE_CONTEXT(call); |
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649 |
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650 std::string publicId = call.GetUriComponent("id", ""); |
233 | 651 context.AnswerFile(call.GetOutput(), publicId, FileContentType_Dicom); |
213
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652 } |
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653 |
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654 |
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655 template <bool simplify> |
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656 static void GetInstanceTags(RestApi::GetCall& call) |
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657 { |
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658 RETRIEVE_CONTEXT(call); |
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659 |
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660 std::string publicId = call.GetUriComponent("id", ""); |
226
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661 |
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662 Json::Value full; |
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663 context.ReadJson(full, publicId); |
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664 |
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665 if (simplify) |
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666 { |
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667 Json::Value simplified; |
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668 SimplifyTags(simplified, full); |
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669 call.GetOutput().AnswerJson(simplified); |
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670 } |
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671 else |
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672 { |
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673 call.GetOutput().AnswerJson(full); |
213
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674 } |
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675 } |
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676 |
214 | 677 |
678 static void ListFrames(RestApi::GetCall& call) | |
679 { | |
680 RETRIEVE_CONTEXT(call); | |
681 | |
682 Json::Value instance; | |
683 if (context.GetIndex().LookupResource(instance, call.GetUriComponent("id", ""), ResourceType_Instance)) | |
684 { | |
685 unsigned int numberOfFrames = 1; | |
686 | |
687 try | |
688 { | |
689 Json::Value tmp = instance["MainDicomTags"]["NumberOfFrames"]; | |
690 numberOfFrames = boost::lexical_cast<unsigned int>(tmp.asString()); | |
691 } | |
692 catch (...) | |
693 { | |
694 } | |
695 | |
696 Json::Value result = Json::arrayValue; | |
697 for (unsigned int i = 0; i < numberOfFrames; i++) | |
698 { | |
699 result.append(i); | |
700 } | |
701 | |
702 call.GetOutput().AnswerJson(result); | |
703 } | |
704 } | |
705 | |
213
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706 |
215
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707 template <enum ImageExtractionMode mode> |
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708 static void GetImage(RestApi::GetCall& call) |
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709 { |
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710 RETRIEVE_CONTEXT(call); |
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711 |
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712 std::string frameId = call.GetUriComponent("frame", "0"); |
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713 |
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714 unsigned int frame; |
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715 try |
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716 { |
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717 frame = boost::lexical_cast<unsigned int>(frameId); |
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718 } |
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719 catch (boost::bad_lexical_cast) |
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720 { |
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721 return; |
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722 } |
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723 |
227
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724 std::string publicId = call.GetUriComponent("id", ""); |
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725 std::string dicomContent, png; |
233 | 726 context.ReadFile(dicomContent, publicId, FileContentType_Dicom); |
215
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727 |
227
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728 try |
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729 { |
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730 FromDcmtkBridge::ExtractPngImage(png, dicomContent, frame, mode); |
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731 call.GetOutput().AnswerBuffer(png, "image/png"); |
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732 } |
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733 catch (OrthancException& e) |
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734 { |
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735 if (e.GetErrorCode() == ErrorCode_ParameterOutOfRange) |
215
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736 { |
227
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737 // The frame number is out of the range for this DICOM |
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738 // instance, the resource is not existent |
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739 } |
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740 else |
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741 { |
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742 std::string root = ""; |
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743 for (size_t i = 1; i < call.GetFullUri().size(); i++) |
215
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744 { |
227
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745 root += "../"; |
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746 } |
218 | 747 |
227
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748 call.GetOutput().Redirect(root + "app/images/unsupported.png"); |
215
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749 } |
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750 } |
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751 } |
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752 |
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753 |
216
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754 // Upload of DICOM files through HTTP --------------------------------------- |
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755 |
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756 static void UploadDicomFile(RestApi::PostCall& call) |
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757 { |
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758 RETRIEVE_CONTEXT(call); |
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759 |
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760 const std::string& postData = call.GetPostBody(); |
291
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761 if (postData.size() == 0) |
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762 { |
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763 return; |
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764 } |
216
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765 |
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766 LOG(INFO) << "Receiving a DICOM file of " << postData.size() << " bytes through HTTP"; |
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767 |
291
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768 DcmFileFormat dicomFile; |
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769 |
216
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770 { |
291
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771 // Prepare an input stream for the memory buffer |
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772 DcmInputBufferStream is; |
216
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773 is.setBuffer(&postData[0], postData.size()); |
291
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774 is.setEos(); |
216
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775 |
291
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776 dicomFile.transferInit(); |
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777 if (!dicomFile.read(is).good()) |
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778 { |
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779 call.GetOutput().SignalError(Orthanc_HttpStatus_415_UnsupportedMediaType); |
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780 return; |
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781 } |
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782 dicomFile.loadAllDataIntoMemory(); |
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783 dicomFile.transferEnd(); |
216
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784 } |
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785 |
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786 DicomMap dicomSummary; |
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787 FromDcmtkBridge::Convert(dicomSummary, *dicomFile.getDataset()); |
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788 |
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789 DicomInstanceHasher hasher(dicomSummary); |
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790 |
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791 Json::Value dicomJson; |
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792 FromDcmtkBridge::ToJson(dicomJson, *dicomFile.getDataset()); |
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793 |
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794 StoreStatus status = StoreStatus_Failure; |
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795 if (postData.size() > 0) |
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796 { |
224
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797 status = context.Store |
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798 (reinterpret_cast<const char*>(&postData[0]), postData.size(), |
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799 dicomSummary, dicomJson, ""); |
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800 } |
216
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801 |
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802 Json::Value result = Json::objectValue; |
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803 |
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804 if (status != StoreStatus_Failure) |
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805 { |
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806 result["ID"] = hasher.HashInstance(); |
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807 result["Path"] = GetBasePath(ResourceType_Instance, hasher.HashInstance()); |
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808 } |
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809 |
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810 result["Status"] = ToString(status); |
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811 call.GetOutput().AnswerJson(result); |
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812 } |
215
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813 |
210
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814 |
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815 // DICOM bridge ------------------------------------------------------------- |
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816 |
230 | 817 static bool IsExistingModality(const OrthancRestApi::Modalities& modalities, |
227
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818 const std::string& id) |
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819 { |
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820 return modalities.find(id) != modalities.end(); |
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821 } |
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822 |
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823 static void ListModalities(RestApi::GetCall& call) |
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824 { |
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825 RETRIEVE_MODALITIES(call); |
210
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826 |
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827 Json::Value result = Json::arrayValue; |
230 | 828 for (OrthancRestApi::Modalities::const_iterator |
227
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829 it = modalities.begin(); it != modalities.end(); it++) |
210
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830 { |
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831 result.append(*it); |
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832 } |
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833 |
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834 call.GetOutput().AnswerJson(result); |
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835 } |
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836 |
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837 |
227
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838 static void ListModalityOperations(RestApi::GetCall& call) |
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839 { |
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840 RETRIEVE_MODALITIES(call); |
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841 |
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842 std::string id = call.GetUriComponent("id", ""); |
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843 if (IsExistingModality(modalities, id)) |
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844 { |
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845 Json::Value result = Json::arrayValue; |
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846 result.append("find-patient"); |
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847 result.append("find-study"); |
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848 result.append("find-series"); |
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849 result.append("find"); |
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850 result.append("store"); |
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851 call.GetOutput().AnswerJson(result); |
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852 } |
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853 } |
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854 |
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855 |
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856 |
285
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857 // Raw access to the DICOM tags of an instance ------------------------------ |
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858 |
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859 static void GetRawContent(RestApi::GetCall& call) |
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860 { |
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861 // TODO IMPROVE MULTITHREADING |
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862 static boost::mutex mutex_; |
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863 boost::mutex::scoped_lock lock(mutex_); |
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864 |
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865 RETRIEVE_CONTEXT(call); |
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866 std::string id = call.GetUriComponent("id", ""); |
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867 ParsedDicomFile& dicom = context.GetDicomFile(id); |
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868 dicom.SendPathValue(call.GetOutput(), call.GetTrailingUri()); |
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869 } |
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870 |
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871 |
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872 |
302
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873 // Modification of DICOM tags ----------------------------------------------- |
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874 |
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875 template <enum ResourceType resourceType> |
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876 static void Modify(RestApi::PostCall& call) |
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877 { |
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878 RETRIEVE_CONTEXT(call); |
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879 |
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880 std::string id = call.GetUriComponent("id", ""); |
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881 ParsedDicomFile& dicom = context.GetDicomFile(id); |
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882 |
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883 std::auto_ptr<ParsedDicomFile> modified(dicom.Clone()); |
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884 |
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885 modified->InsertOrReplace(DicomTag(0x0010,0x0010), "0.42"); |
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886 modified->Remove(DicomTag(0x0010,0x0020)); |
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887 /*modified->Insert(DicomTag(0x0018,0x9082), "0.42"); |
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888 modified->Replace(DicomTag(0x0010,0x0010), "Hello");*/ |
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889 modified->Answer(call.GetOutput()); |
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890 } |
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891 |
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892 |
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893 |
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894 // Registration of the various REST handlers -------------------------------- |
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895 |
230 | 896 OrthancRestApi::OrthancRestApi(ServerContext& context) : |
224
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897 context_(context) |
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898 { |
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899 GetListOfDicomModalities(modalities_); |
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900 |
211 | 901 Register("/", ServeRoot); |
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902 Register("/system", GetSystemInformation); |
238 | 903 Register("/statistics", GetStatistics); |
210
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904 Register("/changes", GetChanges); |
237
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905 Register("/exports", GetExports); |
211 | 906 |
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907 Register("/instances", UploadDicomFile); |
211 | 908 Register("/instances", ListResources<ResourceType_Instance>); |
909 Register("/patients", ListResources<ResourceType_Patient>); | |
910 Register("/series", ListResources<ResourceType_Series>); | |
911 Register("/studies", ListResources<ResourceType_Study>); | |
212 | 912 |
913 Register("/instances/{id}", DeleteSingleResource<ResourceType_Instance>); | |
914 Register("/instances/{id}", GetSingleResource<ResourceType_Instance>); | |
915 Register("/patients/{id}", DeleteSingleResource<ResourceType_Patient>); | |
916 Register("/patients/{id}", GetSingleResource<ResourceType_Patient>); | |
917 Register("/series/{id}", DeleteSingleResource<ResourceType_Series>); | |
918 Register("/series/{id}", GetSingleResource<ResourceType_Series>); | |
919 Register("/studies/{id}", DeleteSingleResource<ResourceType_Study>); | |
920 Register("/studies/{id}", GetSingleResource<ResourceType_Study>); | |
250
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921 |
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922 Register("/patients/{id}/archive", GetArchive<ResourceType_Patient>); |
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923 Register("/studies/{id}/archive", GetArchive<ResourceType_Study>); |
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924 Register("/series/{id}/archive", GetArchive<ResourceType_Series>); |
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925 |
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926 Register("/patients/{id}/protected", IsProtectedPatient); |
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927 Register("/patients/{id}/protected", SetPatientProtection); |
213
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928 Register("/instances/{id}/file", GetInstanceFile); |
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929 Register("/instances/{id}/tags", GetInstanceTags<false>); |
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930 Register("/instances/{id}/simplified-tags", GetInstanceTags<true>); |
214 | 931 Register("/instances/{id}/frames", ListFrames); |
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932 Register("/instances/{id}/content/*", GetRawContent); |
213
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933 |
215
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934 Register("/instances/{id}/frames/{frame}/preview", GetImage<ImageExtractionMode_Preview>); |
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935 Register("/instances/{id}/frames/{frame}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
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936 Register("/instances/{id}/frames/{frame}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
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937 Register("/instances/{id}/preview", GetImage<ImageExtractionMode_Preview>); |
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938 Register("/instances/{id}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
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939 Register("/instances/{id}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
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940 |
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941 Register("/modalities", ListModalities); |
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942 Register("/modalities/{id}", ListModalityOperations); |
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943 Register("/modalities/{id}/find-patient", DicomFindPatient); |
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944 Register("/modalities/{id}/find-study", DicomFindStudy); |
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945 Register("/modalities/{id}/find-series", DicomFindSeries); |
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946 Register("/modalities/{id}/find", DicomFind); |
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947 Register("/modalities/{id}/store", DicomStore); |
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948 |
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949 Register("/instances/{id}/modify", Modify<ResourceType_Instance>); |
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950 } |
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951 } |