Mercurial > hg > orthanc

annotate Resources/Samples/Python/AnonymizeAllPatients.py @ 1683:21d31da73374 db-changes

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
fix
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 06 Oct 2015 14:44:52 +0200
parents 6e7e5ed91c2d
children b1291df2f780
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
352
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 #!/usr/bin/python
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 # -*- coding: utf-8 -*-
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3
747
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
4 # Orthanc - A Lightweight, RESTful DICOM Store
1288
6e7e5ed91c2d upgrade to year 2015
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 747
diff changeset
5 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics
6e7e5ed91c2d upgrade to year 2015
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 747
diff changeset
6 # Department, University Hospital of Liege, Belgium
747
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
7 #
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
8 # This program is free software: you can redistribute it and/or
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
9 # modify it under the terms of the GNU General Public License as
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
10 # published by the Free Software Foundation, either version 3 of the
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
11 # License, or (at your option) any later version.
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
12 #
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
13 # This program is distributed in the hope that it will be useful, but
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
14 # WITHOUT ANY WARRANTY; without even the implied warranty of
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
15 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
16 # General Public License for more details.
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
17 #
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
18 # You should have received a copy of the GNU General Public License
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
19 # along with this program. If not, see <http://www.gnu.org/licenses/>.
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
20
44382c8bcd15 added explicit licensing terms for samples
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 353
diff changeset
21
352
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 URL = 'http://localhost:8042'
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 #
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 # This sample code will anonymize all the patients that are stored in
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 # Orthanc.
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 #
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 import sys
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 import RestToolbox
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 # Loop over the patients
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 for patient in RestToolbox.DoGet('%s/patients' % URL):
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 # Ignore patients whose name starts with "Anonymized", as it is
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 # the result of a previous anonymization
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 infos = RestToolbox.DoGet('%s/patients/%s' % (URL, patient))
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 name = infos['MainDicomTags']['PatientName'].lower()
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 if not name.startswith('anonymized'):
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41
cc9eddbf07d3 sample to anonymize patients
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 # Trigger the anonymization
353
61e4c62b8c35 samples of anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 352
diff changeset
43 RestToolbox.DoPost('%s/patients/%s/anonymize' % (URL, patient),
61e4c62b8c35 samples of anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 352
diff changeset
44 { 'Keep' : [ 'SeriesDescription',
61e4c62b8c35 samples of anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 352
diff changeset
45 'StudyDescription' ] })