Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 1564:1b7def486e62
creation of DICOM series
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 21 Aug 2015 15:01:21 +0200 |
parents | 2084b7c20478 |
children | 4b23310eb7e8 |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * |
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6 * This program is free software: you can redistribute it and/or |
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7 * modify it under the terms of the GNU General Public License as |
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8 * published by the Free Software Foundation, either version 3 of the |
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9 * License, or (at your option) any later version. |
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10 * |
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11 * In addition, as a special exception, the copyright holders of this |
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12 * program give permission to link the code of its release with the |
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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14 * that use the same license as the "OpenSSL" library), and distribute |
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15 * the linked executables. You must obey the GNU General Public License |
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16 * in all respects for all of the code used other than "OpenSSL". If you |
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17 * modify file(s) with this exception, you may extend this exception to |
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18 * your version of the file(s), but you are not obligated to do so. If |
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19 * you do not wish to do so, delete this exception statement from your |
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20 * version. If you delete this exception statement from all source files |
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21 * in the program, then also delete it here. |
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22 * |
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23 * This program is distributed in the hope that it will be useful, but |
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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26 * General Public License for more details. |
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27 * |
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28 * You should have received a copy of the GNU General Public License |
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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30 **/ |
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31 |
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32 |
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33 #include "../PrecompiledHeadersServer.h" |
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34 #include "OrthancRestApi.h" |
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35 |
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36 #include "../../Core/Logging.h" |
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37 #include "../../Core/Uuid.h" |
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39 #include "../ServerContext.h" |
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41 |
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42 #include <boost/lexical_cast.hpp> |
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43 |
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44 namespace Orthanc |
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45 { |
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46 // Modification of DICOM instances ------------------------------------------ |
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47 |
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48 enum TagOperation |
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49 { |
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50 TagOperation_Keep, |
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51 TagOperation_Remove |
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52 }; |
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53 |
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54 static void ParseListOfTags(DicomModification& target, |
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55 const Json::Value& query, |
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56 TagOperation operation) |
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57 { |
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58 if (!query.isArray()) |
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59 { |
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60 throw OrthancException(ErrorCode_BadRequest); |
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61 } |
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62 |
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63 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++) |
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64 { |
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65 std::string name = query[i].asString(); |
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66 |
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67 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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68 |
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69 switch (operation) |
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70 { |
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71 case TagOperation_Keep: |
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72 target.Keep(tag); |
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73 VLOG(1) << "Keep: " << name << " " << tag << std::endl; |
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74 break; |
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75 |
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76 case TagOperation_Remove: |
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77 target.Remove(tag); |
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78 VLOG(1) << "Remove: " << name << " " << tag << std::endl; |
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79 break; |
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80 |
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81 default: |
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82 throw OrthancException(ErrorCode_InternalError); |
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83 } |
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84 } |
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85 } |
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86 |
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87 |
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88 static void ParseReplacements(DicomModification& target, |
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89 const Json::Value& replacements) |
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90 { |
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91 if (!replacements.isObject()) |
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92 { |
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93 throw OrthancException(ErrorCode_BadRequest); |
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94 } |
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95 |
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96 Json::Value::Members members = replacements.getMemberNames(); |
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97 for (size_t i = 0; i < members.size(); i++) |
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98 { |
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99 const std::string& name = members[i]; |
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100 std::string value = replacements[name].asString(); |
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101 |
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102 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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103 target.Replace(tag, value); |
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104 |
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105 VLOG(1) << "Replace: " << name << " " << tag << " == " << value << std::endl; |
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106 } |
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107 } |
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108 |
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109 |
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110 static std::string GeneratePatientName(ServerContext& context) |
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111 { |
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112 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence); |
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113 return "Anonymized" + boost::lexical_cast<std::string>(seq); |
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114 } |
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115 |
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116 |
1010 | 117 |
118 bool OrthancRestApi::ParseModifyRequest(DicomModification& target, | |
119 const Json::Value& request) | |
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120 { |
1010 | 121 if (request.isObject()) |
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122 { |
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123 if (request.isMember("RemovePrivateTags")) |
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124 { |
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125 target.SetRemovePrivateTags(true); |
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126 } |
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127 |
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128 if (request.isMember("Remove")) |
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129 { |
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130 ParseListOfTags(target, request["Remove"], TagOperation_Remove); |
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131 } |
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132 |
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133 if (request.isMember("Replace")) |
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134 { |
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135 ParseReplacements(target, request["Replace"]); |
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136 } |
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137 |
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138 return true; |
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139 } |
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140 else |
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141 { |
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142 return false; |
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143 } |
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144 } |
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145 |
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146 |
1010 | 147 static bool ParseModifyRequest(DicomModification& target, |
148 const RestApiPostCall& call) | |
149 { | |
150 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"}}' | |
151 | |
152 Json::Value request; | |
153 if (call.ParseJsonRequest(request)) | |
154 { | |
155 return OrthancRestApi::ParseModifyRequest(target, request); | |
156 } | |
157 else | |
158 { | |
159 return false; | |
160 } | |
161 } | |
162 | |
163 | |
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164 static bool ParseAnonymizationRequest(DicomModification& target, |
974 | 165 RestApiPostCall& call) |
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166 { |
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167 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null,"Remove":["Modality"]}' > Anonymized.dcm |
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168 |
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169 target.SetupAnonymization(); |
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170 std::string patientName = target.GetReplacement(DICOM_TAG_PATIENT_NAME); |
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171 |
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172 Json::Value request; |
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173 if (call.ParseJsonRequest(request) && request.isObject()) |
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174 { |
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175 if (request.isMember("KeepPrivateTags")) |
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176 { |
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177 target.SetRemovePrivateTags(false); |
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178 } |
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179 |
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180 if (request.isMember("Remove")) |
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181 { |
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182 ParseListOfTags(target, request["Remove"], TagOperation_Remove); |
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183 } |
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184 |
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185 if (request.isMember("Replace")) |
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186 { |
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187 ParseReplacements(target, request["Replace"]); |
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188 } |
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189 |
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190 if (request.isMember("Keep")) |
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191 { |
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192 ParseListOfTags(target, request["Keep"], TagOperation_Keep); |
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193 } |
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194 |
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195 if (target.IsReplaced(DICOM_TAG_PATIENT_NAME) && |
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196 target.GetReplacement(DICOM_TAG_PATIENT_NAME) == patientName) |
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197 { |
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198 // Overwrite the random Patient's Name by one that is more |
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199 // user-friendly (provided none was specified by the user) |
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200 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call)), true); |
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201 } |
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202 |
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203 return true; |
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204 } |
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205 else |
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206 { |
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207 return false; |
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208 } |
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209 } |
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210 |
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211 |
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212 static void AnonymizeOrModifyInstance(DicomModification& modification, |
974 | 213 RestApiPostCall& call) |
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214 { |
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215 std::string id = call.GetUriComponent("id", ""); |
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216 |
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217 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
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218 |
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219 std::auto_ptr<ParsedDicomFile> modified(locker.GetDicom().Clone()); |
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220 modification.Apply(*modified); |
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221 modified->Answer(call.GetOutput()); |
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222 } |
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223 |
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224 |
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225 static void AnonymizeOrModifyResource(DicomModification& modification, |
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226 MetadataType metadataType, |
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227 ChangeType changeType, |
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228 ResourceType resourceType, |
974 | 229 RestApiPostCall& call) |
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230 { |
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231 bool isFirst = true; |
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232 Json::Value result(Json::objectValue); |
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233 |
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234 ServerContext& context = OrthancRestApi::GetContext(call); |
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235 |
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236 typedef std::list<std::string> Instances; |
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237 Instances instances; |
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238 std::string id = call.GetUriComponent("id", ""); |
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239 context.GetIndex().GetChildInstances(instances, id); |
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240 |
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241 if (instances.empty()) |
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242 { |
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243 return; |
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244 } |
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245 |
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246 |
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247 /** |
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248 * Loop over all the instances of the resource. |
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249 **/ |
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250 |
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251 for (Instances::const_iterator it = instances.begin(); |
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252 it != instances.end(); ++it) |
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253 { |
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254 LOG(INFO) << "Modifying instance " << *it; |
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255 |
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256 std::auto_ptr<ServerContext::DicomCacheLocker> locker; |
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257 |
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258 try |
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259 { |
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260 locker.reset(new ServerContext::DicomCacheLocker(OrthancRestApi::GetContext(call), *it)); |
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261 } |
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262 catch (OrthancException&) |
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263 { |
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264 // This child instance has been removed in between |
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265 continue; |
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266 } |
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267 |
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268 |
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269 ParsedDicomFile& original = locker->GetDicom(); |
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270 DicomInstanceHasher originalHasher = original.GetHasher(); |
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271 |
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272 |
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273 /** |
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274 * Compute the resulting DICOM instance. |
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275 **/ |
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276 |
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277 std::auto_ptr<ParsedDicomFile> modified(original.Clone()); |
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278 modification.Apply(*modified); |
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279 |
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280 DicomInstanceToStore toStore; |
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281 toStore.SetParsedDicomFile(*modified); |
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282 |
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283 |
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284 /** |
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285 * Prepare the metadata information to associate with the |
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286 * resulting DICOM instance (AnonymizedFrom/ModifiedFrom). |
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287 **/ |
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288 |
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289 DicomInstanceHasher modifiedHasher = modified->GetHasher(); |
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290 |
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291 if (originalHasher.HashSeries() != modifiedHasher.HashSeries()) |
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292 { |
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293 toStore.AddMetadata(ResourceType_Series, metadataType, originalHasher.HashSeries()); |
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294 } |
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295 |
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296 if (originalHasher.HashStudy() != modifiedHasher.HashStudy()) |
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297 { |
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298 toStore.AddMetadata(ResourceType_Study, metadataType, originalHasher.HashStudy()); |
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299 } |
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300 |
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301 if (originalHasher.HashPatient() != modifiedHasher.HashPatient()) |
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302 { |
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303 toStore.AddMetadata(ResourceType_Patient, metadataType, originalHasher.HashPatient()); |
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304 } |
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305 |
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306 assert(*it == originalHasher.HashInstance()); |
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307 toStore.AddMetadata(ResourceType_Instance, metadataType, *it); |
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308 |
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309 |
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310 /** |
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311 * Store the resulting DICOM instance into the Orthanc store. |
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312 **/ |
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313 |
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314 std::string modifiedInstance; |
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315 if (context.Store(modifiedInstance, toStore) != StoreStatus_Success) |
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316 { |
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317 LOG(ERROR) << "Error while storing a modified instance " << *it; |
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318 return; |
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319 } |
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320 |
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321 // Sanity checks in debug mode |
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322 assert(modifiedInstance == modifiedHasher.HashInstance()); |
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323 |
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324 |
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325 /** |
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326 * Compute the JSON object that is returned by the REST call. |
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327 **/ |
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328 |
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329 if (isFirst) |
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330 { |
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331 std::string newId; |
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332 |
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333 switch (resourceType) |
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334 { |
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335 case ResourceType_Series: |
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336 newId = modifiedHasher.HashSeries(); |
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337 break; |
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338 |
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339 case ResourceType_Study: |
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340 newId = modifiedHasher.HashStudy(); |
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341 break; |
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342 |
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343 case ResourceType_Patient: |
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344 newId = modifiedHasher.HashPatient(); |
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345 break; |
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346 |
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347 default: |
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348 throw OrthancException(ErrorCode_InternalError); |
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349 } |
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350 |
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351 result["Type"] = EnumerationToString(resourceType); |
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352 result["ID"] = newId; |
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353 result["Path"] = GetBasePath(resourceType, newId); |
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354 result["PatientID"] = modifiedHasher.HashPatient(); |
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355 isFirst = false; |
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356 } |
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357 } |
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358 |
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359 call.GetOutput().AnswerJson(result); |
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360 } |
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361 |
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362 |
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363 |
974 | 364 static void ModifyInstance(RestApiPostCall& call) |
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365 { |
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366 DicomModification modification; |
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367 modification.SetAllowManualIdentifiers(true); |
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368 |
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369 if (ParseModifyRequest(modification, call)) |
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370 { |
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371 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID)) |
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372 { |
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373 modification.SetLevel(ResourceType_Patient); |
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374 } |
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375 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
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376 { |
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377 modification.SetLevel(ResourceType_Study); |
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378 } |
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379 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
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380 { |
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381 modification.SetLevel(ResourceType_Series); |
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382 } |
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383 else |
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384 { |
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385 modification.SetLevel(ResourceType_Instance); |
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386 } |
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387 |
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388 AnonymizeOrModifyInstance(modification, call); |
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389 } |
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390 } |
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391 |
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392 |
974 | 393 static void AnonymizeInstance(RestApiPostCall& call) |
751
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394 { |
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395 DicomModification modification; |
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More flexible /modify and /anonymize for single instance
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396 modification.SetAllowManualIdentifiers(true); |
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397 |
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398 if (ParseAnonymizationRequest(modification, call)) |
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399 { |
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400 AnonymizeOrModifyInstance(modification, call); |
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401 } |
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402 } |
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diff
changeset
|
403 |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
404 |
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refactoring of anonymization/modification
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diff
changeset
|
405 template <enum ChangeType changeType, |
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refactoring of anonymization/modification
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406 enum ResourceType resourceType> |
974 | 407 static void ModifyResource(RestApiPostCall& call) |
751
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diff
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408 { |
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409 DicomModification modification; |
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410 |
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diff
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411 if (ParseModifyRequest(modification, call)) |
751
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412 { |
796
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413 modification.SetLevel(resourceType); |
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diff
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414 AnonymizeOrModifyResource(modification, MetadataType_ModifiedFrom, |
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changeset
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415 changeType, resourceType, call); |
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416 } |
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diff
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417 } |
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418 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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419 |
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420 template <enum ChangeType changeType, |
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421 enum ResourceType resourceType> |
974 | 422 static void AnonymizeResource(RestApiPostCall& call) |
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423 { |
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424 DicomModification modification; |
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425 |
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426 if (ParseAnonymizationRequest(modification, call)) |
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427 { |
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428 AnonymizeOrModifyResource(modification, MetadataType_AnonymizedFrom, |
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429 changeType, resourceType, call); |
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430 } |
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diff
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431 } |
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diff
changeset
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432 |
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parents:
diff
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433 |
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434 static bool StoreCreatedInstance(std::string& id /* out */, |
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435 ServerContext& context, |
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436 ParsedDicomFile& dicom) |
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437 { |
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438 DicomInstanceToStore toStore; |
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|
439 toStore.SetParsedDicomFile(dicom); |
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440 |
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441 StoreStatus status = context.Store(id, toStore); |
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442 |
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443 if (status == StoreStatus_Failure) |
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444 { |
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445 LOG(ERROR) << "Error while storing a manually-created instance"; |
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446 return false; |
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447 } |
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parents:
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changeset
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448 else |
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449 { |
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450 return true; |
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451 } |
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452 } |
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|
453 |
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diff
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454 |
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diff
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455 static bool CreateDicomV1(ParsedDicomFile& dicom, |
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456 const Json::Value& request) |
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457 { |
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458 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}' |
800
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diff
changeset
|
459 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}' |
796
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diff
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460 |
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461 assert(request.isObject()); |
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Creation of DICOM files with encapsulated PDF
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462 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom"; |
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parents:
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diff
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463 |
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Creation of DICOM files with encapsulated PDF
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parents:
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464 Json::Value::Members members = request.getMemberNames(); |
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Creation of DICOM files with encapsulated PDF
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465 for (size_t i = 0; i < members.size(); i++) |
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Creation of DICOM files with encapsulated PDF
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diff
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466 { |
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Creation of DICOM files with encapsulated PDF
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467 const std::string& name = members[i]; |
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Creation of DICOM files with encapsulated PDF
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468 if (request[name].type() != Json::stringValue) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
469 { |
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Creation of DICOM files with encapsulated PDF
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diff
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470 LOG(ERROR) << "Only string values are supported when creating DICOM instances"; |
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Creation of DICOM files with encapsulated PDF
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471 return false; |
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Creation of DICOM files with encapsulated PDF
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diff
changeset
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472 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
473 |
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Creation of DICOM files with encapsulated PDF
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diff
changeset
|
474 std::string value = request[name].asString(); |
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Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
475 |
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Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
476 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
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477 if (tag == DICOM_TAG_PIXEL_DATA) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
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diff
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|
478 { |
1562 | 479 dicom.EmbedContent(value); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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480 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
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481 else |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
482 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
483 dicom.Replace(tag, value); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
484 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
485 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
486 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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|
487 return true; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
488 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
489 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
490 |
1564
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creation of DICOM series
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diff
changeset
|
491 static void CreateSeries(RestApiPostCall& call, |
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creation of DICOM series
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diff
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|
492 ParsedDicomFile& base /* in */, |
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diff
changeset
|
493 const Json::Value& content) |
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diff
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|
494 { |
1b7def486e62
creation of DICOM series
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parents:
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diff
changeset
|
495 assert(content.isArray()); |
1b7def486e62
creation of DICOM series
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diff
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|
496 assert(content.size() > 0); |
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creation of DICOM series
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diff
changeset
|
497 ServerContext& context = OrthancRestApi::GetContext(call); |
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creation of DICOM series
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diff
changeset
|
498 |
1b7def486e62
creation of DICOM series
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diff
changeset
|
499 base.Replace(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size())); |
1b7def486e62
creation of DICOM series
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parents:
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diff
changeset
|
500 base.Replace(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1"); |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
501 |
1b7def486e62
creation of DICOM series
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parents:
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diff
changeset
|
502 std::string someInstance; |
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creation of DICOM series
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diff
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|
503 |
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504 for (Json::ArrayIndex i = 0; i < content.size(); i++) |
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505 { |
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506 if (content[i].type() != Json::stringValue) |
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|
507 { |
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creation of DICOM series
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|
508 LOG(ERROR) << "The payload of the DICOM instance must be specified according to Data URI scheme"; |
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509 return; |
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510 } |
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511 |
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512 std::auto_ptr<ParsedDicomFile> dicom(base.Clone()); |
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513 dicom->EmbedContent(content[i].asString()); |
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514 dicom->Replace(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1)); |
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515 dicom->Replace(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1)); |
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516 |
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517 if (!StoreCreatedInstance(someInstance, context, *dicom)) |
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creation of DICOM series
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518 { |
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creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
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519 LOG(ERROR) << "Error while creating the series"; |
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|
520 return; |
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creation of DICOM series
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|
521 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
522 } |
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creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
523 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
524 std::string series; |
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creation of DICOM series
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parents:
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diff
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525 if (context.GetIndex().LookupParent(series, someInstance)) |
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creation of DICOM series
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parents:
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diff
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|
526 { |
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creation of DICOM series
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parents:
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diff
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|
527 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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528 } |
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creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
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|
529 } |
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creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
530 |
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creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
531 |
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creation of DICOM series
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parents:
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diff
changeset
|
532 static void CreateDicomV2(RestApiPostCall& call, |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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533 const Json::Value& request) |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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534 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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535 assert(request.isObject()); |
1564
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creation of DICOM series
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diff
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|
536 ServerContext& context = OrthancRestApi::GetContext(call); |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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537 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
538 if (!request.isMember("Tags") || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
539 request["Tags"].type() != Json::objectValue) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
540 { |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
541 return; |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
542 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
543 |
1558
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fix encodings of newly created dicom files
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diff
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|
544 Encoding encoding; |
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parents:
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diff
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|
545 |
1557 | 546 if (request["Tags"].isMember("SpecificCharacterSet")) |
547 { | |
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fix encodings of newly created dicom files
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548 const char* tmp = request["Tags"]["SpecificCharacterSet"].asCString(); |
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fix encodings of newly created dicom files
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parents:
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diff
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|
549 if (!GetDicomEncoding(encoding, tmp)) |
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parents:
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diff
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550 { |
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fix encodings of newly created dicom files
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551 LOG(ERROR) << "Unknown specific character set: " << tmp; |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
552 return; |
1558
124de28b32ed
fix encodings of newly created dicom files
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diff
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|
553 } |
1557 | 554 } |
555 else | |
556 { | |
1558
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557 std::string tmp = Configuration::GetGlobalStringParameter("DefaultEncoding", "Latin1"); |
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fix encodings of newly created dicom files
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|
558 encoding = StringToEncoding(tmp.c_str()); |
1557 | 559 } |
560 | |
1564
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parents:
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diff
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561 ParsedDicomFile dicom; |
1557 | 562 dicom.SetEncoding(encoding); |
563 | |
1555
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
564 ResourceType parentType = ResourceType_Instance; |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
565 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
566 if (request.isMember("Parent")) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
567 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
568 // Locate the parent tags |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
569 std::string parent = request["Parent"].asString(); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
570 if (!context.GetIndex().LookupResourceType(parentType, parent)) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
571 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
572 LOG(ERROR) << "Trying to attach a new DICOM instance to an inexistent resource: " << parent; |
1564
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creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
573 return; |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
574 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
575 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
576 if (parentType == ResourceType_Instance) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
577 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
578 LOG(ERROR) << "Trying to attach a new DICOM instance to an instance (must be a series, study or patient): " << parent; |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
579 return; |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
580 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
581 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
582 // Select one existing child instance of the parent resource, to |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
583 // retrieve all its tags |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
584 Json::Value siblingTags; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
585 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
586 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
587 // Retrieve all the instances of the parent resource |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
588 std::list<std::string> siblingInstances; |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
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589 context.GetIndex().GetChildInstances(siblingInstances, parent); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
590 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
591 if (siblingInstances.empty()) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
592 { |
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creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
593 return; // Error: No instance (should never happen) |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
594 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
595 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
596 context.ReadJson(siblingTags, siblingInstances.front()); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
597 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
598 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
599 // Retrieve the tags for all the parent modules |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
600 typedef std::set<DicomTag> ModuleTags; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
601 ModuleTags moduleTags; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
602 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
603 ResourceType type = parentType; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
604 for (;;) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
605 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
606 DicomTag::AddTagsForModule(moduleTags, GetModule(type)); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
607 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
608 if (type == ResourceType_Patient) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
609 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
610 break; // We're done |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
611 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
612 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
613 // Go up |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
614 std::string tmp; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
615 if (!context.GetIndex().LookupParent(tmp, parent)) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
616 { |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
617 return; |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
618 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
619 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
620 parent = tmp; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
621 type = GetParentResourceType(type); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
622 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
623 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
624 for (ModuleTags::const_iterator it = moduleTags.begin(); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
625 it != moduleTags.end(); it++) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
626 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
627 std::string t = it->Format(); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
628 if (siblingTags.isMember(t)) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
629 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
630 const Json::Value& tag = siblingTags[t]; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
631 if (tag["Type"] == "Null") |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
632 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
633 dicom.Replace(*it, ""); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
634 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
635 else if (tag["Type"] == "String") |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
636 { |
1557 | 637 std::string value = tag["Value"].asString(); |
638 dicom.Replace(*it, Toolbox::ConvertFromUtf8(value, encoding)); | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
639 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
640 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
641 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
642 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
643 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
644 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
645 // Inject time-related information |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
646 std::string date, time; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
647 Toolbox::GetNowDicom(date, time); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
648 dicom.Replace(DICOM_TAG_ACQUISITION_DATE, date); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
649 dicom.Replace(DICOM_TAG_ACQUISITION_TIME, time); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
650 dicom.Replace(DICOM_TAG_CONTENT_DATE, date); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
651 dicom.Replace(DICOM_TAG_CONTENT_TIME, time); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
652 dicom.Replace(DICOM_TAG_INSTANCE_CREATION_DATE, date); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
653 dicom.Replace(DICOM_TAG_INSTANCE_CREATION_TIME, time); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
654 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
655 if (parentType == ResourceType_Patient || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
656 parentType == ResourceType_Study || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
657 parentType == ResourceType_Instance /* no parent */) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
658 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
659 dicom.Replace(DICOM_TAG_SERIES_DATE, date); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
660 dicom.Replace(DICOM_TAG_SERIES_TIME, time); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
661 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
662 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
663 if (parentType == ResourceType_Patient || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
664 parentType == ResourceType_Instance /* no parent */) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
665 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
666 dicom.Replace(DICOM_TAG_STUDY_DATE, date); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
667 dicom.Replace(DICOM_TAG_STUDY_TIME, time); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
668 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
669 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
670 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
671 // Inject the user-specified tags |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
672 Json::Value::Members members = request["Tags"].getMemberNames(); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
673 for (size_t i = 0; i < members.size(); i++) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
674 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
675 const std::string& name = members[i]; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
676 if (request["Tags"][name].type() != Json::stringValue) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
677 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
678 LOG(ERROR) << "Only string values are supported when creating DICOM instances"; |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
679 return; |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
680 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
681 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
682 std::string value = request["Tags"][name].asString(); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
683 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
684 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1557
diff
changeset
|
685 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
686 { |
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1557
diff
changeset
|
687 if (dicom.HasTag(tag)) |
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1557
diff
changeset
|
688 { |
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1557
diff
changeset
|
689 LOG(ERROR) << "Trying to override a value inherited from a parent module"; |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
690 return; |
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1557
diff
changeset
|
691 } |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
692 |
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1557
diff
changeset
|
693 if (tag == DICOM_TAG_PIXEL_DATA) |
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1557
diff
changeset
|
694 { |
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1557
diff
changeset
|
695 LOG(ERROR) << "Use \"Content\" to inject an image into a new DICOM instance"; |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
696 return; |
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1557
diff
changeset
|
697 } |
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1557
diff
changeset
|
698 else |
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1557
diff
changeset
|
699 { |
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1557
diff
changeset
|
700 dicom.Replace(tag, Toolbox::ConvertFromUtf8(value, encoding)); |
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1557
diff
changeset
|
701 } |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
702 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
703 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
704 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
705 // Inject the content (either an image, or a PDF file) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
706 if (request.isMember("Content")) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
707 { |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
708 const Json::Value& content = request["Content"]; |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
709 |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
710 if (content.type() == Json::stringValue) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
711 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
712 dicom.EmbedContent(request["Content"].asString()); |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
713 |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
714 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
715 else if (content.type() == Json::arrayValue) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
716 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
717 if (content.size() > 0) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
718 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
719 // Let's create a series |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
720 CreateSeries(call, dicom, content); |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
721 return; |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
722 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
723 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
724 else |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
725 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
726 LOG(ERROR) << "The payload of the DICOM instance must be specified according to Data URI scheme"; |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
727 return; |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
728 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
729 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
730 |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
731 std::string id; |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
732 if (StoreCreatedInstance(id, context, dicom)) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
733 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
734 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success); |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
735 } |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
736 |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
737 return; |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
738 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
739 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
740 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
741 static void CreateDicom(RestApiPostCall& call) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
742 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
743 Json::Value request; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
744 if (call.ParseJsonRequest(request) && |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
745 request.isObject()) |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
746 { |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
747 if (request.isMember("Tags")) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
748 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
749 CreateDicomV2(call, request); |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
750 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
751 else |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
796
diff
changeset
|
752 { |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
753 // Compatibility with Orthanc <= 0.9.3 |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
754 ServerContext& context = OrthancRestApi::GetContext(call); |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
755 ParsedDicomFile dicom; |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
756 if (CreateDicomV1(dicom, request)) |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1129
diff
changeset
|
757 { |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
758 std::string id; |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
759 if (StoreCreatedInstance(id, context, dicom)) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
760 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
761 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success); |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
762 } |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1129
diff
changeset
|
763 } |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
796
diff
changeset
|
764 } |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
765 } |
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
766 } |
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
767 |
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
768 |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
769 void OrthancRestApi::RegisterAnonymizeModify() |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
770 { |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
771 Register("/instances/{id}/modify", ModifyInstance); |
787
ac18946afa74
refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
772 Register("/series/{id}/modify", ModifyResource<ChangeType_ModifiedSeries, ResourceType_Series>); |
ac18946afa74
refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
773 Register("/studies/{id}/modify", ModifyResource<ChangeType_ModifiedStudy, ResourceType_Study>); |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
774 Register("/patients/{id}/modify", ModifyResource<ChangeType_ModifiedPatient, ResourceType_Patient>); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
775 |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
776 Register("/instances/{id}/anonymize", AnonymizeInstance); |
787
ac18946afa74
refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
777 Register("/series/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedSeries, ResourceType_Series>); |
ac18946afa74
refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
778 Register("/studies/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedStudy, ResourceType_Study>); |
ac18946afa74
refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
779 Register("/patients/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedPatient, ResourceType_Patient>); |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
780 |
1120
009dce4ea2f6
/tools/create-dicom now accepts PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1010
diff
changeset
|
781 Register("/tools/create-dicom", CreateDicom); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
782 } |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
783 } |