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annotate OrthancServer/Search/DatabaseLookup.cpp @ 3084:195ba4cbac3f db-changes

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reorganization
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 04 Jan 2019 16:42:55 +0100
parents 683d572424b6
children 5d51f87d8326
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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33
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34 #include "../PrecompiledHeadersServer.h"
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35 #include "DatabaseLookup.h"
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36
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37 #include "../ServerToolbox.h"
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38 #include "../../Core/DicomParsing/FromDcmtkBridge.h"
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39 #include "../../Core/DicomParsing/ToDcmtkBridge.h"
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40 #include "../../Core/OrthancException.h"
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41 #include "../../Core/Toolbox.h"
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42
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43 namespace Orthanc
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44 {
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45 DatabaseLookup::~DatabaseLookup()
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46 {
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47 for (size_t i = 0; i < constraints_.size(); i++)
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48 {
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49 assert(constraints_[i] != NULL);
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50 delete constraints_[i];
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51 }
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52 }
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54
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55 const DicomTagConstraint& DatabaseLookup::GetConstraint(size_t index) const
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56 {
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57 if (index >= constraints_.size())
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58 {
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59 throw OrthancException(ErrorCode_ParameterOutOfRange);
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60 }
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61 else
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62 {
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63 assert(constraints_[index] != NULL);
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64 return *constraints_[index];
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65 }
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66 }
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67
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68
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69 void DatabaseLookup::AddConstraint(DicomTagConstraint* constraint)
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70 {
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71 if (constraint == NULL)
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72 {
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73 throw OrthancException(ErrorCode_NullPointer);
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74 }
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75 else
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76 {
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77 constraints_.push_back(constraint);
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78 }
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79 }
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80
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81
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82 bool DatabaseLookup::IsMatch(const DicomMap& value) const
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83 {
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84 for (size_t i = 0; i < constraints_.size(); i++)
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85 {
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86 assert(constraints_[i] != NULL);
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87 if (!constraints_[i]->IsMatch(value))
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88 {
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89 return false;
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90 }
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91 }
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92
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93 return true;
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94 }
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95
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96
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97 bool DatabaseLookup::IsMatch(DcmItem& item,
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98 Encoding encoding) const
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99 {
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100 for (size_t i = 0; i < constraints_.size(); i++)
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101 {
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102 assert(constraints_[i] != NULL);
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103
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104 const bool isOptionalConstraint = !constraints_[i]->IsMandatory();
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105 const DcmTagKey tag = ToDcmtkBridge::Convert(constraints_[i]->GetTag());
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106
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107 DcmElement* element = NULL;
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108 if (!item.findAndGetElement(tag, element).good())
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109 {
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110 return isOptionalConstraint;
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111 }
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112
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113 if (element == NULL)
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114 {
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115 return false;
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116 }
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117
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118 std::set<DicomTag> ignoreTagLength;
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119 std::auto_ptr<DicomValue> value(FromDcmtkBridge::ConvertLeafElement
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120 (*element, DicomToJsonFlags_None,
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121 0, encoding, ignoreTagLength));
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122
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123 // WARNING: Also modify "HierarchicalMatcher::Setup()" if modifying this code
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124 if (value.get() == NULL ||
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125 value->IsNull())
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126 {
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127 return isOptionalConstraint;
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128 }
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129 else if (value->IsBinary() ||
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130 !constraints_[i]->IsMatch(value->GetContent()))
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131 {
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132 return false;
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133 }
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134 }
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135
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136 return true;
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137 }
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138
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139
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140 void DatabaseLookup::AddDicomConstraintInternal(const DicomTag& tag,
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141 ValueRepresentation vr,
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142 const std::string& dicomQuery,
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143 bool caseSensitive,
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144 bool mandatoryTag)
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145 {
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146 if ((vr == ValueRepresentation_Date ||
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147 vr == ValueRepresentation_DateTime ||
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148 vr == ValueRepresentation_Time) &&
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149 dicomQuery.find('-') != std::string::npos)
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150 {
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151 /**
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152 * Range matching is only defined for TM, DA and DT value
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153 * representations. This code fixes issues 35 and 37.
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154 *
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155 * Reference: "Range matching is not defined for types of
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156 * Attributes other than dates and times", DICOM PS 3.4,
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157 * C.2.2.2.5 ("Range Matching").
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158 **/
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159 size_t separator = dicomQuery.find('-');
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160 std::string lower = dicomQuery.substr(0, separator);
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161 std::string upper = dicomQuery.substr(separator + 1);
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162
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163 if (!lower.empty())
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164 {
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165 AddConstraint(new DicomTagConstraint
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166 (tag, ConstraintType_GreaterOrEqual, lower, caseSensitive, mandatoryTag));
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167 }
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168
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169 if (!upper.empty())
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170 {
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171 AddConstraint(new DicomTagConstraint
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172 (tag, ConstraintType_SmallerOrEqual, upper, caseSensitive, mandatoryTag));
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173 }
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174 }
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175 else if (dicomQuery.find('\\') != std::string::npos)
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176 {
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177 DicomTag fixedTag(tag);
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178
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179 if (tag == DICOM_TAG_MODALITIES_IN_STUDY)
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180 {
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181 // http://www.itk.org/Wiki/DICOM_QueryRetrieve_Explained
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182 // http://dicomiseasy.blogspot.be/2012/01/dicom-queryretrieve-part-i.html
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183 fixedTag = DICOM_TAG_MODALITY;
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184 }
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185
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186 std::auto_ptr<DicomTagConstraint> constraint
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187 (new DicomTagConstraint(fixedTag, ConstraintType_List, caseSensitive, mandatoryTag));
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188
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189 std::vector<std::string> items;
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190 Toolbox::TokenizeString(items, dicomQuery, '\\');
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191
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192 for (size_t i = 0; i < items.size(); i++)
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193 {
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194 constraint->AddValue(items[i]);
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195 }
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196
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197 AddConstraint(constraint.release());
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198 }
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199 else if (dicomQuery.find('*') != std::string::npos ||
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200 dicomQuery.find('?') != std::string::npos)
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201 {
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202 AddConstraint(new DicomTagConstraint
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203 (tag, ConstraintType_Wildcard, dicomQuery, caseSensitive, mandatoryTag));
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204 }
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205 else
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206 {
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207 AddConstraint(new DicomTagConstraint
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208 (tag, ConstraintType_Equal, dicomQuery, caseSensitive, mandatoryTag));
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209 }
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210 }
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211
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212
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213 void DatabaseLookup::AddDicomConstraint(const DicomTag& tag,
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214 const std::string& dicomQuery,
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215 bool caseSensitivePN,
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216 bool mandatoryTag)
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217 {
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218 ValueRepresentation vr = FromDcmtkBridge::LookupValueRepresentation(tag);
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219
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220 if (vr == ValueRepresentation_Sequence)
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221 {
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222 throw OrthancException(ErrorCode_ParameterOutOfRange);
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223 }
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224
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225 /**
ce310baccda6 DicomTagConstraint and DatabaseLookup
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226 * DICOM specifies that searches must always be case sensitive,
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227 * except for tags with a PN value representation. For PN, Orthanc
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228 * uses the configuration option "CaseSensitivePN" to decide
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229 * whether matching is case-sensitive or case-insensitive.
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230 *
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diff changeset
231 * Reference: DICOM PS 3.4
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232 * - C.2.2.2.1 ("Single Value Matching")
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233 * - C.2.2.2.4 ("Wild Card Matching")
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diff changeset
234 * http://medical.nema.org/Dicom/2011/11_04pu.pdf
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diff changeset
235 *
ce310baccda6 DicomTagConstraint and DatabaseLookup
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236 * "Except for Attributes with a PN Value Representation, only
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237 * entities with values which match exactly the value specified in the
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238 * request shall match. This matching is case-sensitive, i.e.,
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239 * sensitive to the exact encoding of the key attribute value in
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240 * character sets where a letter may have multiple encodings (e.g.,
ce310baccda6 DicomTagConstraint and DatabaseLookup
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241 * based on its case, its position in a word, or whether it is
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242 * accented)
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243 *
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244 * For Attributes with a PN Value Representation (e.g., Patient Name
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245 * (0010,0010)), an application may perform literal matching that is
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diff changeset
246 * either case-sensitive, or that is insensitive to some or all
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diff changeset
247 * aspects of case, position, accent, or other character encoding
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parents:
diff changeset
248 * variants."
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diff changeset
249 *
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250 * (0008,0018) UI SOPInstanceUID => Case-sensitive
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251 * (0008,0050) SH AccessionNumber => Case-sensitive
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252 * (0010,0020) LO PatientID => Case-sensitive
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253 * (0020,000D) UI StudyInstanceUID => Case-sensitive
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254 * (0020,000E) UI SeriesInstanceUID => Case-sensitive
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diff changeset
255 **/
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256
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diff changeset
257 if (vr == ValueRepresentation_PersonName)
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diff changeset
258 {
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259 AddDicomConstraintInternal(tag, vr, dicomQuery, caseSensitivePN, mandatoryTag);
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260 }
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diff changeset
261 else
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diff changeset
262 {
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263 AddDicomConstraintInternal(tag, vr, dicomQuery, true /* case sensitive */, mandatoryTag);
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264 }
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265 }
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266
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267
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268 void DatabaseLookup::AddRestConstraint(const DicomTag& tag,
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269 const std::string& dicomQuery,
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270 bool caseSensitive,
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271 bool mandatoryTag)
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272 {
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273 AddDicomConstraintInternal(tag, FromDcmtkBridge::LookupValueRepresentation(tag),
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274 dicomQuery, caseSensitive, mandatoryTag);
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275 }
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276
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277
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278 bool DatabaseLookup::HasOnlyMainDicomTags() const
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279 {
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280 std::set<DicomTag> mainTags;
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281 DicomMap::GetMainDicomTags(mainTags);
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282
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283 for (size_t i = 0; i < constraints_.size(); i++)
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diff changeset
284 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
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285 assert(constraints_[i] != NULL);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
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286
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
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287 if (mainTags.find(constraints_[i]->GetTag()) == mainTags.end())
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
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288 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
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289 // This is not a main DICOM tag
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Sebastien Jodogne <s.jodogne@gmail.com>
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290 return false;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
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291 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
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292 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
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293
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
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294 return true;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3027
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295 }
2892
ce310baccda6 DicomTagConstraint and DatabaseLookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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296 }