Mercurial > hg > orthanc

annotate OrthancServer/Sources/ServerJobs/SplitStudyJob.cpp @ 5410:16cbfefa15e9

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Solved a deadlock related to the Job Engine events and plugins
author Alain Mazy <am@osimis.io>
date Tue, 07 Nov 2023 12:52:37 +0100
parents 0ea402b4d901
children 48b8dae6dc77
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
5185
0ea402b4d901 upgrade to year 2023
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4892
diff changeset
5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
0ea402b4d901 upgrade to year 2023
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4892
diff changeset
6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 *
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * This program is free software: you can redistribute it and/or
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * modify it under the terms of the GNU General Public License as
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * published by the Free Software Foundation, either version 3 of the
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * License, or (at your option) any later version.
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 *
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * This program is distributed in the hope that it will be useful, but
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * WITHOUT ANY WARRANTY; without even the implied warranty of
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * General Public License for more details.
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 *
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * You should have received a copy of the GNU General Public License
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 **/
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 #include "SplitStudyJob.h"
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24
4045
05b8fd21089c fix path
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
25 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
05b8fd21089c fix path
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
26 #include "../../../OrthancFramework/Sources/Logging.h"
05b8fd21089c fix path
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
27 #include "../../../OrthancFramework/Sources/SerializationToolbox.h"
3095
beeeb6096f27 removing dependencies upon ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
28 #include "../ServerContext.h"
beeeb6096f27 removing dependencies upon ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
29
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 namespace Orthanc
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 void SplitStudyJob::CheckAllowedTag(const DicomTag& tag) const
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 if (allowedTags_.find(tag) == allowedTags_.end())
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
37 throw OrthancException(ErrorCode_ParameterOutOfRange,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
38 "Cannot modify the following tag while splitting a study "
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
39 "(not in the patient/study modules): " +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
40 FromDcmtkBridge::GetTagName(tag, "") +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
41 " (" + tag.Format() + ")");
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
46 void SplitStudyJob::Setup()
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48 SetPermissive(false);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 DicomTag::AddTagsForModule(allowedTags_, DicomModule_Patient);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51 DicomTag::AddTagsForModule(allowedTags_, DicomModule_Study);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 allowedTags_.erase(DICOM_TAG_STUDY_INSTANCE_UID);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 allowedTags_.erase(DICOM_TAG_SERIES_INSTANCE_UID);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 bool SplitStudyJob::HandleInstance(const std::string& instance)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 {
3940
3661e2a72482 safeguard in merge/split job
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
59 if (!HasTrailingStep())
3661e2a72482 safeguard in merge/split job
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
60 {
3661e2a72482 safeguard in merge/split job
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
61 throw OrthancException(ErrorCode_BadSequenceOfCalls,
3661e2a72482 safeguard in merge/split job
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
62 "AddTrailingStep() should have been called after AddSourceSeries()");
3661e2a72482 safeguard in merge/split job
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
63 }
3661e2a72482 safeguard in merge/split job
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
64
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 /**
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 * Retrieve the DICOM instance to be modified
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 **/
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
69 std::unique_ptr<ParsedDicomFile> modified;
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71 try
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 {
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
73 ServerContext::DicomCacheLocker locker(GetContext(), instance);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 modified.reset(locker.GetDicom().Clone(true));
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 catch (OrthancException&)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 LOG(WARNING) << "An instance was removed after the job was issued: " << instance;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79 return false;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83 /**
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84 * Chose the target UIDs
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
85 **/
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
86
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
87 assert(modified->GetHasher().HashStudy() == sourceStudy_);
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
88
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
89 std::string series = modified->GetHasher().HashSeries();
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
90
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
91 SeriesUidMap::const_iterator targetSeriesUid = seriesUidMap_.find(series);
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
92
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
93 if (targetSeriesUid == seriesUidMap_.end())
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
94 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
95 throw OrthancException(ErrorCode_BadFileFormat); // Should never happen
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99 /**
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
100 * Apply user-specified modifications
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
101 **/
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
103 for (std::set<DicomTag>::const_iterator it = removals_.begin();
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104 it != removals_.end(); ++it)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106 modified->Remove(*it);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
108
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
109 for (Replacements::const_iterator it = replacements_.begin();
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110 it != replacements_.end(); ++it)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112 modified->ReplacePlainString(it->first, it->second);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
115
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116 /**
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
117 * Store the new instance into Orthanc
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
118 **/
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
119
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
120 modified->ReplacePlainString(DICOM_TAG_STUDY_INSTANCE_UID, targetStudyUid_);
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
121 modified->ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, targetSeriesUid->second);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
122
3507
69e49fc044f8 Fix generation of "SOP Instance UID" on split and merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3095
diff changeset
123 // Fix since Orthanc 1.5.8: Assign new "SOPInstanceUID", as the instance has been modified
69e49fc044f8 Fix generation of "SOP Instance UID" on split and merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3095
diff changeset
124 modified->ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
69e49fc044f8 Fix generation of "SOP Instance UID" on split and merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3095
diff changeset
125
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
126 if (targetStudy_.empty())
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
127 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
128 targetStudy_ = modified->GetHasher().HashStudy();
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
129 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
130
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
131 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(*modified));
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
132 toStore->SetOrigin(origin_);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
133
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
134 std::string modifiedInstance;
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4712
diff changeset
135 ServerContext::StoreResult result = GetContext().Store(modifiedInstance, *toStore, StoreInstanceMode_Default);
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4712
diff changeset
136 if (result.GetStatus() != StoreStatus_Success)
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
137 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
138 LOG(ERROR) << "Error while storing a modified instance " << instance;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
139 return false;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
140 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
141
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
142 return true;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
143 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
144
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
145
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
146 SplitStudyJob::SplitStudyJob(ServerContext& context,
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
147 const std::string& sourceStudy) :
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
148 CleaningInstancesJob(context, false /* by default, remove source instances */),
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
149 sourceStudy_(sourceStudy),
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
150 targetStudyUid_(FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Study))
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
151 {
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
152 Setup();
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
153
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
154 ResourceType type;
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
155
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
156 if (!GetContext().GetIndex().LookupResourceType(type, sourceStudy) ||
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
157 type != ResourceType_Study)
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
158 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
159 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
160 "Cannot split unknown study " + sourceStudy);
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
161 }
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
162 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
163
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
164
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
165 void SplitStudyJob::SetOrigin(const DicomInstanceOrigin& origin)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
166 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
167 if (IsStarted())
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
168 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
169 throw OrthancException(ErrorCode_BadSequenceOfCalls);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
170 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
171 else
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
172 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
173 origin_ = origin;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
174 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
175 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
176
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
177
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
178 void SplitStudyJob::SetOrigin(const RestApiCall& call)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
179 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
180 SetOrigin(DicomInstanceOrigin::FromRest(call));
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
181 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
182
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
183
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
184 static void RegisterSeries(std::map<std::string, std::string>& target,
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
185 const std::string& series)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
186 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
187 // Generate a target SeriesInstanceUID for this series
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
188 if (target.find(series) == target.end())
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
189 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
190 target[series] = FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
191 }
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
192 }
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
193
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
194
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
195 void SplitStudyJob::AddSourceSeries(const std::string& series)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
196 {
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
197 std::string parent;
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
198
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
199 if (IsStarted())
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
200 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
201 throw OrthancException(ErrorCode_BadSequenceOfCalls);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
202 }
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
203 else if (!GetContext().GetIndex().LookupParent(parent, series, ResourceType_Study) ||
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
204 parent != sourceStudy_)
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
205 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
206 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
207 "This series does not belong to the study to be split: " + series);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
208 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
209 else
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
210 {
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
211 RegisterSeries(seriesUidMap_, series);
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
212
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
213 // Add all the instances of the series as to be processed
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
214 std::list<std::string> instances;
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
215 GetContext().GetIndex().GetChildren(instances, series);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
216
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
217 for (std::list<std::string>::const_iterator
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
218 it = instances.begin(); it != instances.end(); ++it)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
219 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
220 AddInstance(*it);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
221 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
222 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
223 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
224
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
225
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
226 void SplitStudyJob::AddSourceInstance(const std::string& instance)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
227 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
228 std::string study, series;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
229
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
230 if (IsStarted())
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
231 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
232 throw OrthancException(ErrorCode_BadSequenceOfCalls);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
233 }
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
234 else if (!GetContext().GetIndex().LookupParent(series, instance, ResourceType_Series) ||
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
235 !GetContext().GetIndex().LookupParent(study, series, ResourceType_Study) ||
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
236 study != sourceStudy_)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
237 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
238 throw OrthancException(ErrorCode_UnknownResource,
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
239 "This instance does not belong to the study to be split: " + instance);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
240 }
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
241 else
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
242 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
243 RegisterSeries(seriesUidMap_, series);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
244 AddInstance(instance);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
245 }
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
246 }
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
247
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
248
2847
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
249 bool SplitStudyJob::LookupTargetSeriesUid(std::string& uid,
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
250 const std::string& series) const
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
251 {
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
252 SeriesUidMap::const_iterator found = seriesUidMap_.find(series);
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
253
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
254 if (found == seriesUidMap_.end())
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
255 {
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
256 return false;
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
257 }
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
258 else
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
259 {
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
260 uid = found->second;
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
261 return true;
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
262 }
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
263 }
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
264
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
265
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266 void SplitStudyJob::Remove(const DicomTag& tag)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 if (IsStarted())
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
269 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270 throw OrthancException(ErrorCode_BadSequenceOfCalls);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
272
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
273 CheckAllowedTag(tag);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
274 removals_.insert(tag);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 void SplitStudyJob::Replace(const DicomTag& tag,
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
279 const std::string& value)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281 if (IsStarted())
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
282 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283 throw OrthancException(ErrorCode_BadSequenceOfCalls);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
284 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
285
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
286 CheckAllowedTag(tag);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
287 replacements_[tag] = value;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
288 }
2847
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
289
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
290
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
291 bool SplitStudyJob::LookupReplacement(std::string& value,
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
292 const DicomTag& tag) const
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
293 {
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
294 Replacements::const_iterator found = replacements_.find(tag);
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
295
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
296 if (found == replacements_.end())
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
297 {
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
298 return false;
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
299 }
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
300 else
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
301 {
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
302 value = found->second;
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
303 return true;
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
304 }
2da68edacab6 unit testing of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2846
diff changeset
305 }
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
306
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
307
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
308 void SplitStudyJob::GetPublicContent(Json::Value& value)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
309 {
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
310 CleaningInstancesJob::GetPublicContent(value);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
312 if (!targetStudy_.empty())
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
313 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314 value["TargetStudy"] = targetStudy_;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
315 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
317 value["TargetStudyUID"] = targetStudyUid_;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318 }
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
319
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
320
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
321 static const char* SOURCE_STUDY = "SourceStudy";
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
322 static const char* TARGET_STUDY = "TargetStudy";
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
323 static const char* TARGET_STUDY_UID = "TargetStudyUID";
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
324 static const char* SERIES_UID_MAP = "SeriesUIDMap";
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
325 static const char* ORIGIN = "Origin";
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
326 static const char* REPLACEMENTS = "Replacements";
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
327 static const char* REMOVALS = "Removals";
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
328
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
329
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
330 SplitStudyJob::SplitStudyJob(ServerContext& context,
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
331 const Json::Value& serialized) :
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
332 CleaningInstancesJob(context, serialized,
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
333 false /* by default, remove source instances */) // (*)
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
334 {
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
335 if (!HasTrailingStep())
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
336 {
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
337 // Should have been set by (*)
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
338 throw OrthancException(ErrorCode_InternalError);
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
339 }
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
340
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
341 Setup();
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
342
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
343 sourceStudy_ = SerializationToolbox::ReadString(serialized, SOURCE_STUDY);
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
344 targetStudy_ = SerializationToolbox::ReadString(serialized, TARGET_STUDY);
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
345 targetStudyUid_ = SerializationToolbox::ReadString(serialized, TARGET_STUDY_UID);
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
346 SerializationToolbox::ReadMapOfStrings(seriesUidMap_, serialized, SERIES_UID_MAP);
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
347 origin_ = DicomInstanceOrigin(serialized[ORIGIN]);
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
348 SerializationToolbox::ReadMapOfTags(replacements_, serialized, REPLACEMENTS);
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
349 SerializationToolbox::ReadSetOfTags(removals_, serialized, REMOVALS);
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
350 }
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
351
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
352
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
353 bool SplitStudyJob::Serialize(Json::Value& target)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
354 {
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
355 if (!CleaningInstancesJob::Serialize(target))
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
356 {
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
357 return false;
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
358 }
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
359 else
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
360 {
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
361 target[SOURCE_STUDY] = sourceStudy_;
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
362 target[TARGET_STUDY] = targetStudy_;
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
363 target[TARGET_STUDY_UID] = targetStudyUid_;
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2845
diff changeset
364 SerializationToolbox::WriteMapOfStrings(target, seriesUidMap_, SERIES_UID_MAP);
2845
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
365 origin_.Serialize(target[ORIGIN]);
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
366 SerializationToolbox::WriteMapOfTags(target, replacements_, REPLACEMENTS);
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
367 SerializationToolbox::WriteSetOfTags(target, removals_, REMOVALS);
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
368
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
369 return true;
218e2c864d1d serialization of SplitStudyJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
370 }
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372 }