Mercurial > hg > orthanc
annotate OrthancServer/UnitTestsSources/ServerIndexTests.cpp @ 4690:13efc0967cea
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 10 Jun 2021 11:21:22 +0200 |
parents | 66109d24d26e |
children | f0038043fb97 94616af363ec |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 #include "PrecompiledHeadersUnitTests.h" |
4062 | 35 #include <gtest/gtest.h> |
181 | 36 |
4045 | 37 #include "../../OrthancFramework/Sources/Compatibility.h" |
38 #include "../../OrthancFramework/Sources/FileStorage/FilesystemStorage.h" | |
39 #include "../../OrthancFramework/Sources/FileStorage/MemoryStorageArea.h" | |
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40 #include "../../OrthancFramework/Sources/Images/Image.h" |
4045 | 41 #include "../../OrthancFramework/Sources/Logging.h" |
4062 | 42 |
4045 | 43 #include "../Sources/Database/SQLiteDatabaseWrapper.h" |
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44 #include "../Sources/OrthancConfiguration.h" |
4045 | 45 #include "../Sources/Search/DatabaseLookup.h" |
46 #include "../Sources/ServerContext.h" | |
47 #include "../Sources/ServerToolbox.h" | |
183 | 48 |
181 | 49 #include <ctype.h> |
521 | 50 #include <algorithm> |
181 | 51 |
183 | 52 using namespace Orthanc; |
181 | 53 |
183 | 54 namespace |
55 { | |
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56 class TestDatabaseListener : public IDatabaseListener |
181 | 57 { |
58 public: | |
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59 std::vector<std::string> deletedFiles_; |
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60 std::vector<std::string> deletedResources_; |
183 | 61 std::string ancestorId_; |
62 ResourceType ancestorType_; | |
63 | |
64 void Reset() | |
181 | 65 { |
183 | 66 ancestorId_ = ""; |
67 deletedFiles_.clear(); | |
68 } | |
69 | |
70 virtual void SignalRemainingAncestor(ResourceType type, | |
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71 const std::string& publicId) |
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72 ORTHANC_OVERRIDE |
183 | 73 { |
74 ancestorId_ = publicId; | |
75 ancestorType_ = type; | |
181 | 76 } |
77 | |
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78 virtual void SignalAttachmentDeleted(const FileInfo& info) ORTHANC_OVERRIDE |
181 | 79 { |
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80 const std::string fileUuid = info.GetUuid(); |
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81 deletedFiles_.push_back(fileUuid); |
181 | 82 LOG(INFO) << "A file must be removed: " << fileUuid; |
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83 } |
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84 |
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85 virtual void SignalResourceDeleted(ResourceType type, |
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86 const std::string& publicId) ORTHANC_OVERRIDE |
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87 { |
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88 LOG(INFO) << "Deleted resource " << publicId << " of type " << EnumerationToString(type); |
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89 deletedResources_.push_back(publicId); |
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90 } |
181 | 91 }; |
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92 |
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93 |
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94 class DatabaseWrapperTest : public ::testing::Test |
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95 { |
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96 protected: |
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97 std::unique_ptr<TestDatabaseListener> listener_; |
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98 std::unique_ptr<SQLiteDatabaseWrapper> index_; |
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99 std::unique_ptr<SQLiteDatabaseWrapper::UnitTestsTransaction> transaction_; |
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100 |
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101 public: |
738 | 102 DatabaseWrapperTest() |
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103 { |
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104 } |
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105 |
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106 virtual void SetUp() ORTHANC_OVERRIDE |
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107 { |
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108 listener_.reset(new TestDatabaseListener); |
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109 index_.reset(new SQLiteDatabaseWrapper); |
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110 index_->Open(); |
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111 transaction_.reset(dynamic_cast<SQLiteDatabaseWrapper::UnitTestsTransaction*>( |
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112 index_->StartTransaction(TransactionType_ReadWrite, *listener_))); |
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113 } |
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114 |
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115 virtual void TearDown() ORTHANC_OVERRIDE |
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116 { |
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117 transaction_->Commit(0); |
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118 transaction_.reset(); |
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119 |
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120 index_->Close(); |
738 | 121 index_.reset(NULL); |
122 listener_.reset(NULL); | |
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123 } |
1286 | 124 |
125 void CheckTableRecordCount(uint32_t expected, const char* table) | |
126 { | |
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127 ASSERT_EQ(expected, transaction_->GetTableRecordCount(table)); |
1287 | 128 } |
129 | |
130 void CheckNoParent(int64_t id) | |
131 { | |
132 std::string s; | |
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133 ASSERT_FALSE(transaction_->GetParentPublicId(s, id)); |
1287 | 134 } |
135 | |
136 void CheckParentPublicId(const char* expected, int64_t id) | |
137 { | |
138 std::string s; | |
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139 ASSERT_TRUE(transaction_->GetParentPublicId(s, id)); |
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140 ASSERT_EQ(expected, s); |
1286 | 141 } |
142 | |
1287 | 143 void CheckNoChild(int64_t id) |
144 { | |
145 std::list<std::string> j; | |
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146 transaction_->GetChildren(j, id); |
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147 ASSERT_EQ(0u, j.size()); |
1287 | 148 } |
149 | |
150 void CheckOneChild(const char* expected, int64_t id) | |
151 { | |
152 std::list<std::string> j; | |
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153 transaction_->GetChildren(j, id); |
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154 ASSERT_EQ(1u, j.size()); |
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155 ASSERT_EQ(expected, j.front()); |
1287 | 156 } |
157 | |
158 void CheckTwoChildren(const char* expected1, | |
159 const char* expected2, | |
160 int64_t id) | |
161 { | |
162 std::list<std::string> j; | |
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163 transaction_->GetChildren(j, id); |
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164 ASSERT_EQ(2u, j.size()); |
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165 ASSERT_TRUE((expected1 == j.front() && expected2 == j.back()) || |
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166 (expected1 == j.back() && expected2 == j.front())); |
1287 | 167 } |
1746 | 168 |
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169 void DoLookupIdentifier(std::list<std::string>& result, |
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170 ResourceType level, |
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171 const DicomTag& tag, |
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172 ConstraintType type, |
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173 const std::string& value) |
1746 | 174 { |
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175 assert(ServerToolbox::IsIdentifier(tag, level)); |
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176 |
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177 DicomTagConstraint c(tag, type, value, true, true); |
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178 |
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179 std::vector<DatabaseConstraint> lookup; |
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180 lookup.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
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181 |
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182 transaction_->ApplyLookupResources(result, NULL, lookup, level, 0 /* no limit */); |
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183 } |
1746 | 184 |
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185 void DoLookupIdentifier2(std::list<std::string>& result, |
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186 ResourceType level, |
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187 const DicomTag& tag, |
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188 ConstraintType type1, |
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189 const std::string& value1, |
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190 ConstraintType type2, |
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191 const std::string& value2) |
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192 { |
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193 assert(ServerToolbox::IsIdentifier(tag, level)); |
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194 |
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195 DicomTagConstraint c1(tag, type1, value1, true, true); |
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196 DicomTagConstraint c2(tag, type2, value2, true, true); |
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197 |
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198 std::vector<DatabaseConstraint> lookup; |
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199 lookup.push_back(c1.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
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200 lookup.push_back(c2.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
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201 |
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202 transaction_->ApplyLookupResources(result, NULL, lookup, level, 0 /* no limit */); |
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203 } |
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204 }; |
181 | 205 } |
206 | |
207 | |
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208 TEST_F(DatabaseWrapperTest, Simple) |
181 | 209 { |
210 int64_t a[] = { | |
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211 transaction_->CreateResource("a", ResourceType_Patient), // 0 |
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212 transaction_->CreateResource("b", ResourceType_Study), // 1 |
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213 transaction_->CreateResource("c", ResourceType_Series), // 2 |
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214 transaction_->CreateResource("d", ResourceType_Instance), // 3 |
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215 transaction_->CreateResource("e", ResourceType_Instance), // 4 |
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216 transaction_->CreateResource("f", ResourceType_Instance), // 5 |
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217 transaction_->CreateResource("g", ResourceType_Study) // 6 |
181 | 218 }; |
219 | |
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220 ASSERT_EQ("a", transaction_->GetPublicId(a[0])); |
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221 ASSERT_EQ("b", transaction_->GetPublicId(a[1])); |
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222 ASSERT_EQ("c", transaction_->GetPublicId(a[2])); |
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223 ASSERT_EQ("d", transaction_->GetPublicId(a[3])); |
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224 ASSERT_EQ("e", transaction_->GetPublicId(a[4])); |
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225 ASSERT_EQ("f", transaction_->GetPublicId(a[5])); |
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226 ASSERT_EQ("g", transaction_->GetPublicId(a[6])); |
198
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227 |
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228 ASSERT_EQ(ResourceType_Patient, transaction_->GetResourceType(a[0])); |
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229 ASSERT_EQ(ResourceType_Study, transaction_->GetResourceType(a[1])); |
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230 ASSERT_EQ(ResourceType_Series, transaction_->GetResourceType(a[2])); |
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231 ASSERT_EQ(ResourceType_Instance, transaction_->GetResourceType(a[3])); |
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232 ASSERT_EQ(ResourceType_Instance, transaction_->GetResourceType(a[4])); |
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233 ASSERT_EQ(ResourceType_Instance, transaction_->GetResourceType(a[5])); |
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234 ASSERT_EQ(ResourceType_Study, transaction_->GetResourceType(a[6])); |
304 | 235 |
190 | 236 { |
1241 | 237 std::list<std::string> t; |
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238 transaction_->GetAllPublicIds(t, ResourceType_Patient); |
190 | 239 |
232
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240 ASSERT_EQ(1u, t.size()); |
1241 | 241 ASSERT_EQ("a", t.front()); |
190 | 242 |
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243 transaction_->GetAllPublicIds(t, ResourceType_Series); |
232
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244 ASSERT_EQ(1u, t.size()); |
1241 | 245 ASSERT_EQ("c", t.front()); |
190 | 246 |
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247 transaction_->GetAllPublicIds(t, ResourceType_Study); |
232
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248 ASSERT_EQ(2u, t.size()); |
190 | 249 |
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250 transaction_->GetAllPublicIds(t, ResourceType_Instance); |
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251 ASSERT_EQ(3u, t.size()); |
190 | 252 } |
253 | |
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254 transaction_->SetGlobalProperty(GlobalProperty_FlushSleep, true, "World"); |
181 | 255 |
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256 transaction_->AttachChild(a[0], a[1]); |
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257 transaction_->AttachChild(a[1], a[2]); |
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258 transaction_->AttachChild(a[2], a[3]); |
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259 transaction_->AttachChild(a[2], a[4]); |
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260 transaction_->AttachChild(a[6], a[5]); |
182 | 261 |
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262 int64_t parent; |
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263 ASSERT_FALSE(transaction_->LookupParent(parent, a[0])); |
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264 ASSERT_TRUE(transaction_->LookupParent(parent, a[1])); ASSERT_EQ(a[0], parent); |
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265 ASSERT_TRUE(transaction_->LookupParent(parent, a[2])); ASSERT_EQ(a[1], parent); |
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266 ASSERT_TRUE(transaction_->LookupParent(parent, a[3])); ASSERT_EQ(a[2], parent); |
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267 ASSERT_TRUE(transaction_->LookupParent(parent, a[4])); ASSERT_EQ(a[2], parent); |
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268 ASSERT_TRUE(transaction_->LookupParent(parent, a[5])); ASSERT_EQ(a[6], parent); |
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269 ASSERT_FALSE(transaction_->LookupParent(parent, a[6])); |
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270 |
182 | 271 std::string s; |
1286 | 272 |
1287 | 273 CheckNoParent(a[0]); |
274 CheckNoParent(a[6]); | |
275 CheckParentPublicId("a", a[1]); | |
276 CheckParentPublicId("b", a[2]); | |
277 CheckParentPublicId("c", a[3]); | |
278 CheckParentPublicId("c", a[4]); | |
279 CheckParentPublicId("g", a[5]); | |
182 | 280 |
185 | 281 std::list<std::string> l; |
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282 transaction_->GetChildrenPublicId(l, a[0]); ASSERT_EQ(1u, l.size()); ASSERT_EQ("b", l.front()); |
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283 transaction_->GetChildrenPublicId(l, a[1]); ASSERT_EQ(1u, l.size()); ASSERT_EQ("c", l.front()); |
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284 transaction_->GetChildrenPublicId(l, a[3]); ASSERT_EQ(0u, l.size()); |
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285 transaction_->GetChildrenPublicId(l, a[4]); ASSERT_EQ(0u, l.size()); |
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286 transaction_->GetChildrenPublicId(l, a[5]); ASSERT_EQ(0u, l.size()); |
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287 transaction_->GetChildrenPublicId(l, a[6]); ASSERT_EQ(1u, l.size()); ASSERT_EQ("f", l.front()); |
182 | 288 |
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289 transaction_->GetChildrenPublicId(l, a[2]); ASSERT_EQ(2u, l.size()); |
182 | 290 if (l.front() == "d") |
291 { | |
292 ASSERT_EQ("e", l.back()); | |
293 } | |
294 else | |
295 { | |
296 ASSERT_EQ("d", l.back()); | |
297 ASSERT_EQ("e", l.front()); | |
298 } | |
299 | |
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300 std::map<MetadataType, std::string> md; |
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301 transaction_->GetAllMetadata(md, a[4]); |
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302 ASSERT_EQ(0u, md.size()); |
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303 |
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304 transaction_->AddAttachment(a[4], FileInfo("my json file", FileContentType_DicomAsJson, 42, "md5", |
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305 CompressionType_ZlibWithSize, 21, "compressedMD5"), 42); |
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306 transaction_->AddAttachment(a[4], FileInfo("my dicom file", FileContentType_Dicom, 42, "md5"), 43); |
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307 transaction_->AddAttachment(a[6], FileInfo("world", FileContentType_Dicom, 44, "md5"), 44); |
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308 |
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309 // TODO - REVISIONS - "42" is revision number, that is not currently stored (*) |
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310 transaction_->SetMetadata(a[4], MetadataType_RemoteAet, "PINNACLE", 42); |
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311 |
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312 transaction_->GetAllMetadata(md, a[4]); |
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313 ASSERT_EQ(1u, md.size()); |
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314 ASSERT_EQ("PINNACLE", md[MetadataType_RemoteAet]); |
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315 transaction_->SetMetadata(a[4], MetadataType_ModifiedFrom, "TUTU", 10); |
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316 transaction_->GetAllMetadata(md, a[4]); |
438 | 317 ASSERT_EQ(2u, md.size()); |
1030 | 318 |
319 std::map<MetadataType, std::string> md2; | |
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320 transaction_->GetAllMetadata(md2, a[4]); |
1030 | 321 ASSERT_EQ(2u, md2.size()); |
322 ASSERT_EQ("TUTU", md2[MetadataType_ModifiedFrom]); | |
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323 ASSERT_EQ("PINNACLE", md2[MetadataType_RemoteAet]); |
1030 | 324 |
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325 transaction_->DeleteMetadata(a[4], MetadataType_ModifiedFrom); |
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326 transaction_->GetAllMetadata(md, a[4]); |
438 | 327 ASSERT_EQ(1u, md.size()); |
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328 ASSERT_EQ("PINNACLE", md[MetadataType_RemoteAet]); |
182 | 329 |
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330 transaction_->GetAllMetadata(md2, a[4]); |
1030 | 331 ASSERT_EQ(1u, md2.size()); |
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332 ASSERT_EQ("PINNACLE", md2[MetadataType_RemoteAet]); |
1030 | 333 |
334 | |
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335 ASSERT_EQ(21u + 42u + 44u, transaction_->GetTotalCompressedSize()); |
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336 ASSERT_EQ(42u + 42u + 44u, transaction_->GetTotalUncompressedSize()); |
181 | 337 |
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338 transaction_->SetMainDicomTag(a[3], DicomTag(0x0010, 0x0010), "PatientName"); |
181 | 339 |
340 int64_t b; | |
341 ResourceType t; | |
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342 ASSERT_TRUE(transaction_->LookupResource(b, t, "g")); |
181 | 343 ASSERT_EQ(7, b); |
344 ASSERT_EQ(ResourceType_Study, t); | |
345 | |
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346 int64_t revision; |
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347 ASSERT_TRUE(transaction_->LookupMetadata(s, revision, a[4], MetadataType_RemoteAet)); |
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348 ASSERT_EQ(0, revision); // "0" instead of "42" because of (*) |
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349 ASSERT_FALSE(transaction_->LookupMetadata(s, revision, a[4], MetadataType_Instance_IndexInSeries)); |
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350 ASSERT_EQ(0, revision); |
181 | 351 ASSERT_EQ("PINNACLE", s); |
1238 | 352 |
353 std::string u; | |
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354 ASSERT_TRUE(transaction_->LookupMetadata(u, revision, a[4], MetadataType_RemoteAet)); |
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355 ASSERT_EQ(0, revision); |
1238 | 356 ASSERT_EQ("PINNACLE", u); |
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357 ASSERT_FALSE(transaction_->LookupMetadata(u, revision, a[4], MetadataType_Instance_IndexInSeries)); |
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358 ASSERT_EQ(0, revision); |
181 | 359 |
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360 ASSERT_TRUE(transaction_->LookupGlobalProperty(s, GlobalProperty_FlushSleep, true)); |
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361 ASSERT_FALSE(transaction_->LookupGlobalProperty(s, static_cast<GlobalProperty>(42), true)); |
181 | 362 ASSERT_EQ("World", s); |
363 | |
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364 FileInfo att; |
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365 ASSERT_TRUE(transaction_->LookupAttachment(att, revision, a[4], FileContentType_DicomAsJson)); |
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366 ASSERT_EQ(0, revision); // "0" instead of "42" because of (*) |
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367 ASSERT_EQ("my json file", att.GetUuid()); |
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368 ASSERT_EQ(21u, att.GetCompressedSize()); |
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369 ASSERT_EQ("md5", att.GetUncompressedMD5()); |
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370 ASSERT_EQ("compressedMD5", att.GetCompressedMD5()); |
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371 ASSERT_EQ(42u, att.GetUncompressedSize()); |
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372 ASSERT_EQ(CompressionType_ZlibWithSize, att.GetCompressionType()); |
181 | 373 |
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374 ASSERT_TRUE(transaction_->LookupAttachment(att, revision, a[6], FileContentType_Dicom)); |
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375 ASSERT_EQ(0, revision); // "0" instead of "42" because of (*) |
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376 ASSERT_EQ("world", att.GetUuid()); |
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377 ASSERT_EQ(44u, att.GetCompressedSize()); |
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378 ASSERT_EQ("md5", att.GetUncompressedMD5()); |
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379 ASSERT_EQ("md5", att.GetCompressedMD5()); |
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380 ASSERT_EQ(44u, att.GetUncompressedSize()); |
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381 ASSERT_EQ(CompressionType_None, att.GetCompressionType()); |
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382 |
738 | 383 ASSERT_EQ(0u, listener_->deletedFiles_.size()); |
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384 ASSERT_EQ(0u, listener_->deletedResources_.size()); |
1286 | 385 |
386 CheckTableRecordCount(7, "Resources"); | |
387 CheckTableRecordCount(3, "AttachedFiles"); | |
388 CheckTableRecordCount(1, "Metadata"); | |
389 CheckTableRecordCount(1, "MainDicomTags"); | |
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390 |
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391 transaction_->DeleteResource(a[0]); |
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392 ASSERT_EQ(5u, listener_->deletedResources_.size()); |
738 | 393 ASSERT_EQ(2u, listener_->deletedFiles_.size()); |
394 ASSERT_FALSE(std::find(listener_->deletedFiles_.begin(), | |
395 listener_->deletedFiles_.end(), | |
396 "my json file") == listener_->deletedFiles_.end()); | |
397 ASSERT_FALSE(std::find(listener_->deletedFiles_.begin(), | |
398 listener_->deletedFiles_.end(), | |
399 "my dicom file") == listener_->deletedFiles_.end()); | |
183 | 400 |
1286 | 401 CheckTableRecordCount(2, "Resources"); |
402 CheckTableRecordCount(0, "Metadata"); | |
403 CheckTableRecordCount(1, "AttachedFiles"); | |
404 CheckTableRecordCount(0, "MainDicomTags"); | |
405 | |
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406 transaction_->DeleteResource(a[5]); |
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407 ASSERT_EQ(7u, listener_->deletedResources_.size()); |
1286 | 408 |
409 CheckTableRecordCount(0, "Resources"); | |
410 CheckTableRecordCount(0, "AttachedFiles"); | |
3121 | 411 CheckTableRecordCount(3, "GlobalProperties"); |
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412 |
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413 std::string tmp; |
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414 ASSERT_TRUE(transaction_->LookupGlobalProperty(tmp, GlobalProperty_DatabaseSchemaVersion, true)); |
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415 ASSERT_EQ("6", tmp); |
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416 ASSERT_TRUE(transaction_->LookupGlobalProperty(tmp, GlobalProperty_FlushSleep, true)); |
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417 ASSERT_EQ("World", tmp); |
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418 ASSERT_TRUE(transaction_->LookupGlobalProperty(tmp, GlobalProperty_GetTotalSizeIsFast, true)); |
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419 ASSERT_EQ("1", tmp); |
183 | 420 |
738 | 421 ASSERT_EQ(3u, listener_->deletedFiles_.size()); |
422 ASSERT_FALSE(std::find(listener_->deletedFiles_.begin(), | |
423 listener_->deletedFiles_.end(), | |
424 "world") == listener_->deletedFiles_.end()); | |
183 | 425 } |
426 | |
427 | |
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428 TEST_F(DatabaseWrapperTest, Upward) |
183 | 429 { |
430 int64_t a[] = { | |
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431 transaction_->CreateResource("a", ResourceType_Patient), // 0 |
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432 transaction_->CreateResource("b", ResourceType_Study), // 1 |
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433 transaction_->CreateResource("c", ResourceType_Series), // 2 |
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434 transaction_->CreateResource("d", ResourceType_Instance), // 3 |
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435 transaction_->CreateResource("e", ResourceType_Instance), // 4 |
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436 transaction_->CreateResource("f", ResourceType_Study), // 5 |
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437 transaction_->CreateResource("g", ResourceType_Series), // 6 |
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438 transaction_->CreateResource("h", ResourceType_Series) // 7 |
183 | 439 }; |
440 | |
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441 transaction_->AttachChild(a[0], a[1]); |
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442 transaction_->AttachChild(a[1], a[2]); |
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443 transaction_->AttachChild(a[2], a[3]); |
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444 transaction_->AttachChild(a[2], a[4]); |
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445 transaction_->AttachChild(a[1], a[6]); |
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446 transaction_->AttachChild(a[0], a[5]); |
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447 transaction_->AttachChild(a[5], a[7]); |
183 | 448 |
1287 | 449 CheckTwoChildren("b", "f", a[0]); |
450 CheckTwoChildren("c", "g", a[1]); | |
451 CheckTwoChildren("d", "e", a[2]); | |
452 CheckNoChild(a[3]); | |
453 CheckNoChild(a[4]); | |
454 CheckOneChild("h", a[5]); | |
455 CheckNoChild(a[6]); | |
456 CheckNoChild(a[7]); | |
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457 |
738 | 458 listener_->Reset(); |
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459 transaction_->DeleteResource(a[3]); |
738 | 460 ASSERT_EQ("c", listener_->ancestorId_); |
461 ASSERT_EQ(ResourceType_Series, listener_->ancestorType_); | |
183 | 462 |
738 | 463 listener_->Reset(); |
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464 transaction_->DeleteResource(a[4]); |
738 | 465 ASSERT_EQ("b", listener_->ancestorId_); |
466 ASSERT_EQ(ResourceType_Study, listener_->ancestorType_); | |
183 | 467 |
738 | 468 listener_->Reset(); |
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469 transaction_->DeleteResource(a[7]); |
738 | 470 ASSERT_EQ("a", listener_->ancestorId_); |
471 ASSERT_EQ(ResourceType_Patient, listener_->ancestorType_); | |
183 | 472 |
738 | 473 listener_->Reset(); |
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474 transaction_->DeleteResource(a[6]); |
738 | 475 ASSERT_EQ("", listener_->ancestorId_); // No more ancestor |
181 | 476 } |
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477 |
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478 |
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479 TEST_F(DatabaseWrapperTest, PatientRecycling) |
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480 { |
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481 std::vector<int64_t> patients; |
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482 for (int i = 0; i < 10; i++) |
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483 { |
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484 std::string p = "Patient " + boost::lexical_cast<std::string>(i); |
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485 patients.push_back(transaction_->CreateResource(p, ResourceType_Patient)); |
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486 transaction_->AddAttachment(patients[i], FileInfo(p, FileContentType_Dicom, i + 10, |
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487 "md5-" + boost::lexical_cast<std::string>(i)), 42); |
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488 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[i])); |
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489 } |
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490 |
1286 | 491 CheckTableRecordCount(10u, "Resources"); |
492 CheckTableRecordCount(10u, "PatientRecyclingOrder"); | |
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493 |
738 | 494 listener_->Reset(); |
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495 ASSERT_EQ(0u, listener_->deletedResources_.size()); |
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496 |
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497 transaction_->DeleteResource(patients[5]); |
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498 transaction_->DeleteResource(patients[0]); |
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499 ASSERT_EQ(2u, listener_->deletedResources_.size()); |
1286 | 500 |
501 CheckTableRecordCount(8u, "Resources"); | |
502 CheckTableRecordCount(8u, "PatientRecyclingOrder"); | |
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503 |
738 | 504 ASSERT_EQ(2u, listener_->deletedFiles_.size()); |
505 ASSERT_EQ("Patient 5", listener_->deletedFiles_[0]); | |
506 ASSERT_EQ("Patient 0", listener_->deletedFiles_[1]); | |
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507 |
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508 int64_t p; |
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509 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[1]); |
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510 transaction_->DeleteResource(p); |
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511 ASSERT_EQ(3u, listener_->deletedResources_.size()); |
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512 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[2]); |
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513 transaction_->DeleteResource(p); |
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514 ASSERT_EQ(4u, listener_->deletedResources_.size()); |
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515 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[3]); |
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516 transaction_->DeleteResource(p); |
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517 ASSERT_EQ(5u, listener_->deletedResources_.size()); |
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518 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[4]); |
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519 transaction_->DeleteResource(p); |
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520 ASSERT_EQ(6u, listener_->deletedResources_.size()); |
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521 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[6]); |
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522 transaction_->DeleteResource(p); |
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523 transaction_->DeleteResource(patients[8]); |
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524 ASSERT_EQ(8u, listener_->deletedResources_.size()); |
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525 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[7]); |
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526 transaction_->DeleteResource(p); |
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527 ASSERT_EQ(9u, listener_->deletedResources_.size()); |
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528 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[9]); |
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529 transaction_->DeleteResource(p); |
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530 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p)); |
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531 ASSERT_EQ(10u, listener_->deletedResources_.size()); |
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532 |
738 | 533 ASSERT_EQ(10u, listener_->deletedFiles_.size()); |
1286 | 534 |
535 CheckTableRecordCount(0, "Resources"); | |
536 CheckTableRecordCount(0, "PatientRecyclingOrder"); | |
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537 } |
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538 |
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539 |
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540 TEST_F(DatabaseWrapperTest, PatientProtection) |
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541 { |
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542 std::vector<int64_t> patients; |
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543 for (int i = 0; i < 5; i++) |
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544 { |
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545 std::string p = "Patient " + boost::lexical_cast<std::string>(i); |
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546 patients.push_back(transaction_->CreateResource(p, ResourceType_Patient)); |
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547 transaction_->AddAttachment(patients[i], FileInfo(p, FileContentType_Dicom, i + 10, |
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548 "md5-" + boost::lexical_cast<std::string>(i)), 42); |
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549 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[i])); |
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550 } |
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551 |
1286 | 552 CheckTableRecordCount(5, "Resources"); |
553 CheckTableRecordCount(5, "PatientRecyclingOrder"); | |
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554 |
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555 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
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556 transaction_->SetProtectedPatient(patients[2], true); |
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557 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 558 CheckTableRecordCount(5, "Resources"); |
559 CheckTableRecordCount(4, "PatientRecyclingOrder"); | |
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560 |
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561 transaction_->SetProtectedPatient(patients[2], true); |
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562 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 563 CheckTableRecordCount(4, "PatientRecyclingOrder"); |
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564 transaction_->SetProtectedPatient(patients[2], false); |
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565 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 566 CheckTableRecordCount(5, "PatientRecyclingOrder"); |
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567 transaction_->SetProtectedPatient(patients[2], false); |
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568 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 569 CheckTableRecordCount(5, "PatientRecyclingOrder"); |
570 CheckTableRecordCount(5, "Resources"); | |
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571 transaction_->SetProtectedPatient(patients[2], true); |
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572 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 573 CheckTableRecordCount(4, "PatientRecyclingOrder"); |
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574 transaction_->SetProtectedPatient(patients[2], false); |
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575 ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); |
1286 | 576 CheckTableRecordCount(5, "PatientRecyclingOrder"); |
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577 transaction_->SetProtectedPatient(patients[3], true); |
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578 ASSERT_TRUE(transaction_->IsProtectedPatient(patients[3])); |
1286 | 579 CheckTableRecordCount(4, "PatientRecyclingOrder"); |
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580 |
1286 | 581 CheckTableRecordCount(5, "Resources"); |
738 | 582 ASSERT_EQ(0u, listener_->deletedFiles_.size()); |
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583 |
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584 // Unprotecting a patient puts it at the last position in the recycling queue |
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585 int64_t p; |
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586 ASSERT_EQ(0u, listener_->deletedResources_.size()); |
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587 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[0]); |
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588 transaction_->DeleteResource(p); |
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589 ASSERT_EQ(1u, listener_->deletedResources_.size()); |
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590 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p, patients[1])); ASSERT_EQ(p, patients[4]); |
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591 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[1]); |
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592 transaction_->DeleteResource(p); |
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593 ASSERT_EQ(2u, listener_->deletedResources_.size()); |
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594 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[4]); |
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595 transaction_->DeleteResource(p); |
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596 ASSERT_EQ(3u, listener_->deletedResources_.size()); |
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597 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p, patients[2])); |
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598 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[2]); |
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599 transaction_->DeleteResource(p); |
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600 ASSERT_EQ(4u, listener_->deletedResources_.size()); |
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601 // "patients[3]" is still protected |
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602 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p)); |
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603 |
738 | 604 ASSERT_EQ(4u, listener_->deletedFiles_.size()); |
1286 | 605 CheckTableRecordCount(1, "Resources"); |
606 CheckTableRecordCount(0, "PatientRecyclingOrder"); | |
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607 |
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608 transaction_->SetProtectedPatient(patients[3], false); |
1286 | 609 CheckTableRecordCount(1, "PatientRecyclingOrder"); |
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610 ASSERT_FALSE(transaction_->SelectPatientToRecycle(p, patients[3])); |
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611 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p, patients[2])); |
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612 ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[3]); |
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613 transaction_->DeleteResource(p); |
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614 ASSERT_EQ(5u, listener_->deletedResources_.size()); |
262
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615 |
738 | 616 ASSERT_EQ(5u, listener_->deletedFiles_.size()); |
1286 | 617 CheckTableRecordCount(0, "Resources"); |
618 CheckTableRecordCount(0, "PatientRecyclingOrder"); | |
262
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619 } |
310 | 620 |
621 | |
1237 | 622 TEST(ServerIndex, Sequence) |
310 | 623 { |
1237 | 624 const std::string path = "UnitTestsStorage"; |
625 | |
2140 | 626 SystemToolbox::RemoveFile(path + "/index"); |
1237 | 627 FilesystemStorage storage(path); |
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628 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
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629 db.Open(); |
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630 ServerContext context(db, storage, true /* running unit tests */, 10); |
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631 context.SetupJobsEngine(true, false); |
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632 |
1237 | 633 ServerIndex& index = context.GetIndex(); |
634 | |
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635 ASSERT_EQ(1u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
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636 ASSERT_EQ(2u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
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637 ASSERT_EQ(3u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
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638 ASSERT_EQ(4u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); |
1453
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639 |
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640 context.Stop(); |
1672
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641 db.Close(); |
310 | 642 } |
521 | 643 |
644 | |
3081
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645 TEST_F(DatabaseWrapperTest, LookupIdentifier) |
521 | 646 { |
647 int64_t a[] = { | |
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648 transaction_->CreateResource("a", ResourceType_Study), // 0 |
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649 transaction_->CreateResource("b", ResourceType_Study), // 1 |
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650 transaction_->CreateResource("c", ResourceType_Study), // 2 |
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651 transaction_->CreateResource("d", ResourceType_Series) // 3 |
521 | 652 }; |
653 | |
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654 transaction_->SetIdentifierTag(a[0], DICOM_TAG_STUDY_INSTANCE_UID, "0"); |
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655 transaction_->SetIdentifierTag(a[1], DICOM_TAG_STUDY_INSTANCE_UID, "1"); |
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656 transaction_->SetIdentifierTag(a[2], DICOM_TAG_STUDY_INSTANCE_UID, "0"); |
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657 transaction_->SetIdentifierTag(a[3], DICOM_TAG_SERIES_INSTANCE_UID, "0"); |
521 | 658 |
3075
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IDatabaseWrapper::ApplyLookupResources now returns lists
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parents:
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diff
changeset
|
659 std::list<std::string> s; |
521 | 660 |
3036
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moving LookupIdentifierQuery to the graveyard
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diff
changeset
|
661 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_Equal, "0"); |
521 | 662 ASSERT_EQ(2u, s.size()); |
1746 | 663 ASSERT_TRUE(std::find(s.begin(), s.end(), "a") != s.end()); |
664 ASSERT_TRUE(std::find(s.begin(), s.end(), "c") != s.end()); | |
521 | 665 |
3036
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changeset
|
666 DoLookupIdentifier(s, ResourceType_Series, DICOM_TAG_SERIES_INSTANCE_UID, ConstraintType_Equal, "0"); |
1718
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changeset
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667 ASSERT_EQ(1u, s.size()); |
1746 | 668 ASSERT_TRUE(std::find(s.begin(), s.end(), "d") != s.end()); |
521 | 669 |
3036
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changeset
|
670 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_Equal, "1"); |
521 | 671 ASSERT_EQ(1u, s.size()); |
1746 | 672 ASSERT_TRUE(std::find(s.begin(), s.end(), "b") != s.end()); |
521 | 673 |
3036
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diff
changeset
|
674 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_Equal, "1"); |
521 | 675 ASSERT_EQ(1u, s.size()); |
1746 | 676 ASSERT_TRUE(std::find(s.begin(), s.end(), "b") != s.end()); |
521 | 677 |
3036
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|
678 DoLookupIdentifier(s, ResourceType_Series, DICOM_TAG_SERIES_INSTANCE_UID, ConstraintType_Equal, "1"); |
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679 ASSERT_EQ(0u, s.size()); |
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|
680 |
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681 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "0"); |
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682 ASSERT_EQ(3u, s.size()); |
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changeset
|
683 |
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changeset
|
684 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "1"); |
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changeset
|
685 ASSERT_EQ(1u, s.size()); |
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changeset
|
686 |
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diff
changeset
|
687 DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "2"); |
1718
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diff
changeset
|
688 ASSERT_EQ(0u, s.size()); |
521 | 689 |
3036
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diff
changeset
|
690 DoLookupIdentifier2(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, |
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diff
changeset
|
691 ConstraintType_GreaterOrEqual, "0", ConstraintType_SmallerOrEqual, "0"); |
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diff
changeset
|
692 ASSERT_EQ(2u, s.size()); |
1746 | 693 |
3036
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diff
changeset
|
694 DoLookupIdentifier2(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, |
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changeset
|
695 ConstraintType_GreaterOrEqual, "1", ConstraintType_SmallerOrEqual, "1"); |
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diff
changeset
|
696 ASSERT_EQ(1u, s.size()); |
1746 | 697 |
3036
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diff
changeset
|
698 DoLookupIdentifier2(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, |
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3019
diff
changeset
|
699 ConstraintType_GreaterOrEqual, "0", ConstraintType_SmallerOrEqual, "1"); |
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diff
changeset
|
700 ASSERT_EQ(3u, s.size()); |
562
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refactoring enumerations
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parents:
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diff
changeset
|
701 } |
705 | 702 |
703 | |
713
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test attachment recycling
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parents:
711
diff
changeset
|
704 TEST(ServerIndex, AttachmentRecycling) |
705 | 705 { |
803
4689e400e0fa
directory to store the results of the unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
738
diff
changeset
|
706 const std::string path = "UnitTestsStorage"; |
1124
790ff7a5b3bf
IStorageArea abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
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1030
diff
changeset
|
707 |
2140 | 708 SystemToolbox::RemoveFile(path + "/index"); |
1124
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IStorageArea abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
709 FilesystemStorage storage(path); |
3017
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renamed class DatabaseWrapper as SQLiteDatabaseWrapper
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diff
changeset
|
710 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
1672
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changeset
|
711 db.Open(); |
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changeset
|
712 ServerContext context(db, storage, true /* running unit tests */, 10); |
2815
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unserialization of jobs from plugins
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changeset
|
713 context.SetupJobsEngine(true, false); |
705 | 714 ServerIndex& index = context.GetIndex(); |
707
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unit tests of httpclient
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parents:
706
diff
changeset
|
715 |
706 | 716 index.SetMaximumStorageSize(10); |
717 | |
3174
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primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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3121
diff
changeset
|
718 uint64_t diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances; |
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diff
changeset
|
719 index.GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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changeset
|
720 countStudies, countSeries, countInstances); |
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changeset
|
721 |
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diff
changeset
|
722 ASSERT_EQ(0u, countPatients); |
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diff
changeset
|
723 ASSERT_EQ(0u, diskSize); |
705 | 724 |
725 ServerIndex::Attachments attachments; | |
726 | |
713
9d1973813d8b
test attachment recycling
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diff
changeset
|
727 std::vector<std::string> ids; |
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diff
changeset
|
728 for (int i = 0; i < 10; i++) |
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|
729 { |
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diff
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|
730 std::string id = boost::lexical_cast<std::string>(i); |
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diff
changeset
|
731 DicomMap instance; |
2007
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DicomMap::ParseDicomMetaInformation()
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diff
changeset
|
732 instance.SetValue(DICOM_TAG_PATIENT_ID, "patient-" + id, false); |
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DicomMap::ParseDicomMetaInformation()
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diff
changeset
|
733 instance.SetValue(DICOM_TAG_STUDY_INSTANCE_UID, "study-" + id, false); |
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DicomMap::ParseDicomMetaInformation()
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diff
changeset
|
734 instance.SetValue(DICOM_TAG_SERIES_INSTANCE_UID, "series-" + id, false); |
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DicomMap::ParseDicomMetaInformation()
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diff
changeset
|
735 instance.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "instance-" + id, false); |
2208
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
736 instance.SetValue(DICOM_TAG_SOP_CLASS_UID, "1.2.840.10008.5.1.4.1.1.1", false); // CR image |
1006
649d47854314
proper handling of metadata in Store
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831
diff
changeset
|
737 |
4505
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removed cached dicom summary from DicomInstanceToStore
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diff
changeset
|
738 ParsedDicomFile dicom(instance, GetDefaultDicomEncoding(), false /* be strict */); |
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changeset
|
739 |
4508
8f9090b137f1
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diff
changeset
|
740 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
4505
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diff
changeset
|
741 |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
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diff
changeset
|
742 std::map<MetadataType, std::string> instanceMetadata; |
ac69c9f76c71
refactoring ServerIndex::Store()
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changeset
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743 |
4505
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changeset
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744 { |
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diff
changeset
|
745 DicomMap summary; |
4508
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parents:
4507
diff
changeset
|
746 OrthancConfiguration::DefaultExtractDicomSummary(summary, toStore->GetParsedDicomFile()); |
4514
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747 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
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748 |
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749 DicomTransferSyntax transferSyntax; |
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750 bool hasTransferSyntax = dicom.LookupTransferSyntax(transferSyntax); |
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751 ASSERT_EQ(StoreStatus_Success, index.Store( |
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752 instanceMetadata, summary, attachments, toStore->GetMetadata(), |
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753 toStore->GetOrigin(), false /* don't overwrite */, |
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754 hasTransferSyntax, transferSyntax, true /* pixel data offset */, 42)); |
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755 } |
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756 |
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757 ASSERT_EQ(6u, instanceMetadata.size()); |
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758 ASSERT_TRUE(instanceMetadata.find(MetadataType_RemoteAet) != instanceMetadata.end()); |
1029 | 759 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_ReceptionDate) != instanceMetadata.end()); |
2190 | 760 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_TransferSyntax) != instanceMetadata.end()); |
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761 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_SopClassUid) != instanceMetadata.end()); |
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762 ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_PixelDataOffset) != instanceMetadata.end()); |
2190 | 763 |
4499 | 764 ASSERT_EQ("42", instanceMetadata[MetadataType_Instance_PixelDataOffset]); |
765 | |
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766 // The default transfer syntax depends on the OS endianness |
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767 std::string s = instanceMetadata[MetadataType_Instance_TransferSyntax]; |
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768 ASSERT_TRUE(s == "1.2.840.10008.1.2.1" || |
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769 s == "1.2.840.10008.1.2.2"); |
713
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770 |
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771 ASSERT_EQ("1.2.840.10008.5.1.4.1.1.1", instanceMetadata[MetadataType_Instance_SopClassUid]); |
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772 |
713
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773 DicomInstanceHasher hasher(instance); |
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774 ids.push_back(hasher.HashPatient()); |
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775 ids.push_back(hasher.HashStudy()); |
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776 ids.push_back(hasher.HashSeries()); |
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777 ids.push_back(hasher.HashInstance()); |
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778 } |
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779 |
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780 index.GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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781 countStudies, countSeries, countInstances); |
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782 ASSERT_EQ(10u, countPatients); |
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783 ASSERT_EQ(0u, diskSize); |
713
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784 |
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785 for (size_t i = 0; i < ids.size(); i++) |
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786 { |
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787 FileInfo info(Toolbox::GenerateUuid(), FileContentType_Dicom, 1, "md5"); |
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788 int64_t revision = -1; |
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789 index.AddAttachment(revision, info, ids[i], false /* no previous revision */, -1, ""); |
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790 ASSERT_EQ(0, revision); |
713
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791 |
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792 index.GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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793 countStudies, countSeries, countInstances); |
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794 ASSERT_GE(10u, diskSize); |
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795 } |
707
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796 |
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797 // Because the DB is in memory, the SQLite index must not have been created |
2140 | 798 ASSERT_FALSE(SystemToolbox::IsRegularFile(path + "/index")); |
1453
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799 |
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800 context.Stop(); |
1672
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801 db.Close(); |
705 | 802 } |
1764 | 803 |
804 | |
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805 TEST(ServerIndex, NormalizeIdentifier) |
1764 | 806 { |
2121 | 807 ASSERT_EQ("H^L.LO", ServerToolbox::NormalizeIdentifier(" Hé^l.LO %_ ")); |
808 ASSERT_EQ("1.2.840.113619.2.176.2025", ServerToolbox::NormalizeIdentifier(" 1.2.840.113619.2.176.2025 ")); | |
1764 | 809 } |
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810 |
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811 |
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812 TEST(ServerIndex, Overwrite) |
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813 { |
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814 // Create a dummy 1x1 image |
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815 Image image(PixelFormat_Grayscale8, 1, 1, false); |
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816 reinterpret_cast<uint8_t*>(image.GetBuffer()) [0] = 128; |
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817 |
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818 for (unsigned int i = 0; i < 2; i++) |
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819 { |
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820 bool overwrite = (i == 0); |
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821 |
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822 MemoryStorageArea storage; |
3017
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823 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
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824 db.Open(); |
2950
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825 ServerContext context(db, storage, true /* running unit tests */, 10); |
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826 context.SetupJobsEngine(true, false); |
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827 context.SetCompressionEnabled(true); |
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828 |
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829 DicomMap instance; |
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830 instance.SetValue(DICOM_TAG_PATIENT_ID, "patient", false); |
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831 instance.SetValue(DICOM_TAG_PATIENT_NAME, "name", false); |
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832 instance.SetValue(DICOM_TAG_STUDY_INSTANCE_UID, "study", false); |
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833 instance.SetValue(DICOM_TAG_SERIES_INSTANCE_UID, "series", false); |
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834 instance.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "sop", false); |
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835 instance.SetValue(DICOM_TAG_SOP_CLASS_UID, "1.2.840.10008.5.1.4.1.1.1", false); // CR image |
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836 |
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837 DicomInstanceHasher hasher(instance); |
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838 std::string id = hasher.HashInstance(); |
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839 context.SetOverwriteInstances(overwrite); |
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840 |
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841 uint64_t diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances; |
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842 context.GetIndex().GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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843 countStudies, countSeries, countInstances); |
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844 |
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845 ASSERT_EQ(0u, countInstances); |
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846 ASSERT_EQ(0u, diskSize); |
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847 |
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848 { |
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849 ParsedDicomFile dicom(instance, GetDefaultDicomEncoding(), false /* be strict */); |
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850 |
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851 // Add a pixel data so as to have one "FileContentType_DicomUntilPixelData" |
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852 // (because of "context.SetCompressionEnabled(true)") |
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853 dicom.EmbedImage(image); |
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854 |
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855 DicomInstanceHasher hasher(instance); |
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856 |
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857 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
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858 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
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859 ASSERT_EQ(id, hasher.HashInstance()); |
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860 |
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861 std::string id2; |
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862 ASSERT_EQ(StoreStatus_Success, context.Store(id2, *toStore, StoreInstanceMode_Default)); |
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863 ASSERT_EQ(id, id2); |
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864 } |
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865 |
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866 { |
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867 FileInfo nope; |
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868 int64_t revision; |
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869 ASSERT_FALSE(context.GetIndex().LookupAttachment(nope, revision, id, FileContentType_DicomAsJson)); |
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870 } |
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871 |
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872 FileInfo dicom1, pixelData1; |
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873 int64_t revision; |
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874 ASSERT_TRUE(context.GetIndex().LookupAttachment(dicom1, revision, id, FileContentType_Dicom)); |
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875 ASSERT_EQ(0, revision); |
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876 revision = -1; |
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877 ASSERT_TRUE(context.GetIndex().LookupAttachment(pixelData1, revision, id, FileContentType_DicomUntilPixelData)); |
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878 ASSERT_EQ(0, revision); |
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879 |
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880 context.GetIndex().GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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881 countStudies, countSeries, countInstances); |
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882 ASSERT_EQ(1u, countInstances); |
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883 ASSERT_EQ(dicom1.GetCompressedSize() + pixelData1.GetCompressedSize(), diskSize); |
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884 ASSERT_EQ(dicom1.GetUncompressedSize() + pixelData1.GetUncompressedSize(), uncompressedSize); |
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885 |
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886 Json::Value tmp; |
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887 context.ReadDicomAsJson(tmp, id); |
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888 ASSERT_EQ("name", tmp["0010,0010"]["Value"].asString()); |
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889 |
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890 { |
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891 ServerContext::DicomCacheLocker locker(context, id); |
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892 std::string tmp; |
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893 locker.GetDicom().GetTagValue(tmp, DICOM_TAG_PATIENT_NAME); |
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894 ASSERT_EQ("name", tmp); |
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895 } |
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896 |
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897 { |
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898 DicomMap instance2; |
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899 instance2.Assign(instance); |
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900 instance2.SetValue(DICOM_TAG_PATIENT_NAME, "overwritten", false); |
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901 |
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902 ParsedDicomFile dicom(instance2, GetDefaultDicomEncoding(), false /* be strict */); |
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903 |
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904 // Add a pixel data so as to have one "FileContentType_DicomUntilPixelData" |
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905 dicom.EmbedImage(image); |
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906 |
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907 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
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908 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
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909 |
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910 std::string id2; |
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911 ASSERT_EQ(overwrite ? StoreStatus_Success : StoreStatus_AlreadyStored, |
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912 context.Store(id2, *toStore, StoreInstanceMode_Default)); |
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913 ASSERT_EQ(id, id2); |
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914 } |
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|
915 |
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916 { |
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|
917 FileInfo nope; |
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918 int64_t revision; |
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919 ASSERT_FALSE(context.GetIndex().LookupAttachment(nope, revision, id, FileContentType_DicomAsJson)); |
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|
920 } |
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921 |
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|
922 FileInfo dicom2, pixelData2; |
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923 ASSERT_TRUE(context.GetIndex().LookupAttachment(dicom2, revision, id, FileContentType_Dicom)); |
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924 ASSERT_EQ(0, revision); |
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925 revision = -1; |
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|
926 ASSERT_TRUE(context.GetIndex().LookupAttachment(pixelData2, revision, id, FileContentType_DicomUntilPixelData)); |
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|
927 ASSERT_EQ(0, revision); |
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928 |
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929 context.GetIndex().GetGlobalStatistics(diskSize, uncompressedSize, countPatients, |
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930 countStudies, countSeries, countInstances); |
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diff
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|
931 ASSERT_EQ(1u, countInstances); |
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932 ASSERT_EQ(dicom2.GetCompressedSize() + pixelData2.GetCompressedSize(), diskSize); |
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933 ASSERT_EQ(dicom2.GetUncompressedSize() + pixelData2.GetUncompressedSize(), uncompressedSize); |
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|
934 |
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935 if (overwrite) |
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|
936 { |
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|
937 ASSERT_NE(dicom1.GetUuid(), dicom2.GetUuid()); |
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938 ASSERT_NE(pixelData1.GetUuid(), pixelData2.GetUuid()); |
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|
939 ASSERT_NE(dicom1.GetUncompressedSize(), dicom2.GetUncompressedSize()); |
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940 ASSERT_NE(pixelData1.GetUncompressedSize(), pixelData2.GetUncompressedSize()); |
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|
941 |
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942 context.ReadDicomAsJson(tmp, id); |
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943 ASSERT_EQ("overwritten", tmp["0010,0010"]["Value"].asString()); |
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|
944 |
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|
945 { |
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946 ServerContext::DicomCacheLocker locker(context, id); |
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|
947 std::string tmp; |
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948 locker.GetDicom().GetTagValue(tmp, DICOM_TAG_PATIENT_NAME); |
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|
949 ASSERT_EQ("overwritten", tmp); |
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950 } |
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951 } |
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952 else |
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953 { |
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954 ASSERT_EQ(dicom1.GetUuid(), dicom2.GetUuid()); |
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955 ASSERT_EQ(pixelData1.GetUuid(), pixelData2.GetUuid()); |
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956 ASSERT_EQ(dicom1.GetUncompressedSize(), dicom2.GetUncompressedSize()); |
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957 ASSERT_EQ(pixelData1.GetUncompressedSize(), pixelData2.GetUncompressedSize()); |
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|
958 |
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959 context.ReadDicomAsJson(tmp, id); |
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960 ASSERT_EQ("name", tmp["0010,0010"]["Value"].asString()); |
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961 |
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962 { |
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963 ServerContext::DicomCacheLocker locker(context, id); |
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964 std::string tmp; |
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965 locker.GetDicom().GetTagValue(tmp, DICOM_TAG_PATIENT_NAME); |
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|
966 ASSERT_EQ("name", tmp); |
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967 } |
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968 } |
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969 |
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|
970 context.Stop(); |
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|
971 db.Close(); |
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972 } |
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973 } |
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974 |
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975 |
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976 TEST(ServerIndex, DicomUntilPixelData) |
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977 { |
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978 // Create a dummy 1x1 image |
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979 Image image(PixelFormat_Grayscale8, 1, 1, false); |
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980 reinterpret_cast<uint8_t*>(image.GetBuffer()) [0] = 128; |
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981 |
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982 for (unsigned int i = 0; i < 2; i++) |
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983 { |
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984 const bool compression = (i == 0); |
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985 |
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986 MemoryStorageArea storage; |
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987 SQLiteDatabaseWrapper db; // The SQLite DB is in memory |
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988 db.Open(); |
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989 ServerContext context(db, storage, true /* running unit tests */, 10); |
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990 context.SetupJobsEngine(true, false); |
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991 context.SetCompressionEnabled(compression); |
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992 |
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993 for (unsigned int j = 0; j < 2; j++) |
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994 { |
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995 const bool withPixelData = (j == 0); |
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996 |
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997 ParsedDicomFile dicom(true); |
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998 |
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999 if (withPixelData) |
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1000 { |
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1001 dicom.EmbedImage(image); |
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1002 } |
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1003 |
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1004 std::string id; |
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1005 size_t dicomSize; |
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1006 |
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1007 { |
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1008 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); |
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1009 dicomSize = toStore->GetBufferSize(); |
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1010 toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); |
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1011 ASSERT_EQ(StoreStatus_Success, context.Store(id, *toStore, StoreInstanceMode_Default)); |
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1012 } |
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1013 |
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1014 std::set<FileContentType> attachments; |
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1015 context.GetIndex().ListAvailableAttachments(attachments, id, ResourceType_Instance); |
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1016 |
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1017 ASSERT_TRUE(attachments.find(FileContentType_Dicom) != attachments.end()); |
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1018 |
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1019 if (compression && |
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1020 withPixelData) |
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1021 { |
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1022 ASSERT_EQ(2u, attachments.size()); |
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1023 ASSERT_TRUE(attachments.find(FileContentType_DicomUntilPixelData) != attachments.end()); |
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1024 } |
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1025 else |
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1026 { |
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1027 ASSERT_EQ(1u, attachments.size()); |
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1028 } |
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1029 |
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1030 std::string s; |
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1031 int64_t revision; |
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1032 bool found = context.GetIndex().LookupMetadata(s, revision, id, ResourceType_Instance, |
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1033 MetadataType_Instance_PixelDataOffset); |
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1034 |
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1035 if (withPixelData) |
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1036 { |
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1037 ASSERT_TRUE(found); |
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1038 ASSERT_EQ(0, revision); |
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1039 ASSERT_GT(boost::lexical_cast<int>(s), 128 /* length of the DICOM preamble */); |
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1040 ASSERT_LT(boost::lexical_cast<size_t>(s), dicomSize); |
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1041 } |
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1042 else |
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1043 { |
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1044 ASSERT_FALSE(found); |
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1045 } |
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1046 } |
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1047 } |
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1048 } |