Mercurial > hg > orthanc
annotate OrthancServer/ServerJobs/ResourceModificationJob.cpp @ 2926:0bcf46cea4e4
fix for older versions of boost::regex
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Fri, 09 Nov 2018 11:55:16 +0100 |
| parents | abce036683cd |
| children | bbfd95a0c429 |
| rev | line source |
|---|---|
| 2642 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
| 4 * Department, University Hospital of Liege, Belgium | |
| 5 * Copyright (C) 2017-2018 Osimis S.A., Belgium | |
| 6 * | |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 11 * | |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 23 * | |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #include "../PrecompiledHeadersServer.h" | |
| 35 #include "ResourceModificationJob.h" | |
| 36 | |
| 37 #include "../../Core/Logging.h" | |
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38 #include "../../Core/SerializationToolbox.h" |
| 2642 | 39 |
| 40 namespace Orthanc | |
| 41 { | |
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42 class ResourceModificationJob::Output : public boost::noncopyable |
| 2642 | 43 { |
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44 private: |
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45 ResourceType level_; |
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46 bool isFirst_; |
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47 std::string id_; |
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48 std::string patientId_; |
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49 |
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50 public: |
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51 Output(ResourceType level) : |
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52 level_(level), |
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53 isFirst_(true) |
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54 { |
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55 if (level_ != ResourceType_Patient && |
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56 level_ != ResourceType_Study && |
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57 level_ != ResourceType_Series) |
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58 { |
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59 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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60 } |
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61 } |
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62 |
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63 ResourceType GetLevel() const |
| 2642 | 64 { |
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65 return level_; |
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66 } |
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67 |
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68 |
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69 void Update(DicomInstanceHasher& hasher) |
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70 { |
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71 if (isFirst_) |
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72 { |
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73 switch (level_) |
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74 { |
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75 case ResourceType_Series: |
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76 id_ = hasher.HashSeries(); |
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77 break; |
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78 |
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79 case ResourceType_Study: |
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80 id_ = hasher.HashStudy(); |
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81 break; |
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82 |
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83 case ResourceType_Patient: |
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84 id_ = hasher.HashPatient(); |
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85 break; |
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86 |
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87 default: |
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88 throw OrthancException(ErrorCode_InternalError); |
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89 } |
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90 |
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91 patientId_ = hasher.HashPatient(); |
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92 isFirst_ = false; |
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93 } |
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94 } |
| 2642 | 95 |
| 96 | |
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97 bool Format(Json::Value& target) |
| 2642 | 98 { |
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99 if (isFirst_) |
| 2642 | 100 { |
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101 return false; |
| 2642 | 102 } |
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103 else |
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104 { |
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105 target = Json::objectValue; |
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106 target["Type"] = EnumerationToString(level_); |
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107 target["ID"] = id_; |
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108 target["Path"] = GetBasePath(level_, id_); |
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109 target["PatientID"] = patientId_; |
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110 return true; |
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111 } |
| 2642 | 112 } |
| 113 | |
| 114 | |
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115 bool GetIdentifier(std::string& id) |
| 2642 | 116 { |
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117 if (isFirst_) |
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118 { |
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119 return false; |
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120 } |
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121 else |
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122 { |
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123 id = id_; |
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124 return true; |
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125 } |
| 2642 | 126 } |
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127 }; |
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128 |
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129 |
| 2642 | 130 |
| 131 | |
| 132 bool ResourceModificationJob::HandleInstance(const std::string& instance) | |
| 133 { | |
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134 if (modification_.get() == NULL || |
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135 output_.get() == NULL) |
| 2642 | 136 { |
| 137 LOG(ERROR) << "No modification was provided for this job"; | |
| 138 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 139 } | |
| 140 | |
| 141 | |
| 142 LOG(INFO) << "Modifying instance in a job: " << instance; | |
| 143 | |
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144 |
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145 /** |
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146 * Retrieve the original instance from the DICOM cache. |
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147 **/ |
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148 |
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149 std::auto_ptr<DicomInstanceHasher> originalHasher; |
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150 std::auto_ptr<ParsedDicomFile> modified; |
| 2642 | 151 |
| 152 try | |
| 153 { | |
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154 ServerContext::DicomCacheLocker locker(context_, instance); |
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155 ParsedDicomFile& original = locker.GetDicom(); |
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156 |
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157 originalHasher.reset(new DicomInstanceHasher(original.GetHasher())); |
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158 modified.reset(original.Clone(true)); |
| 2642 | 159 } |
| 160 catch (OrthancException&) | |
| 161 { | |
| 162 LOG(WARNING) << "An instance was removed after the job was issued: " << instance; | |
| 163 return false; | |
| 164 } | |
| 165 | |
| 166 | |
| 167 /** | |
| 168 * Compute the resulting DICOM instance. | |
| 169 **/ | |
| 170 | |
| 171 modification_->Apply(*modified); | |
| 172 | |
| 173 DicomInstanceToStore toStore; | |
| 174 toStore.SetOrigin(origin_); | |
| 175 toStore.SetParsedDicomFile(*modified); | |
| 176 | |
| 177 | |
| 178 /** | |
| 179 * Prepare the metadata information to associate with the | |
| 180 * resulting DICOM instance (AnonymizedFrom/ModifiedFrom). | |
| 181 **/ | |
| 182 | |
| 183 DicomInstanceHasher modifiedHasher = modified->GetHasher(); | |
| 184 | |
| 185 MetadataType metadataType = (isAnonymization_ ? | |
| 186 MetadataType_AnonymizedFrom : | |
| 187 MetadataType_ModifiedFrom); | |
| 188 | |
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189 if (originalHasher->HashSeries() != modifiedHasher.HashSeries()) |
| 2642 | 190 { |
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191 toStore.AddMetadata(ResourceType_Series, metadataType, originalHasher->HashSeries()); |
| 2642 | 192 } |
| 193 | |
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194 if (originalHasher->HashStudy() != modifiedHasher.HashStudy()) |
| 2642 | 195 { |
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196 toStore.AddMetadata(ResourceType_Study, metadataType, originalHasher->HashStudy()); |
| 2642 | 197 } |
| 198 | |
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199 if (originalHasher->HashPatient() != modifiedHasher.HashPatient()) |
| 2642 | 200 { |
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201 toStore.AddMetadata(ResourceType_Patient, metadataType, originalHasher->HashPatient()); |
| 2642 | 202 } |
| 203 | |
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204 assert(instance == originalHasher->HashInstance()); |
| 2642 | 205 toStore.AddMetadata(ResourceType_Instance, metadataType, instance); |
| 206 | |
| 207 | |
| 208 /** | |
| 209 * Store the resulting DICOM instance into the Orthanc store. | |
| 210 **/ | |
| 211 | |
| 212 std::string modifiedInstance; | |
| 213 if (context_.Store(modifiedInstance, toStore) != StoreStatus_Success) | |
| 214 { | |
| 215 LOG(ERROR) << "Error while storing a modified instance " << instance; | |
| 216 throw OrthancException(ErrorCode_CannotStoreInstance); | |
| 217 } | |
| 218 | |
| 219 assert(modifiedInstance == modifiedHasher.HashInstance()); | |
| 220 | |
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221 output_->Update(modifiedHasher); |
| 2642 | 222 |
| 223 return true; | |
| 224 } | |
| 225 | |
| 226 | |
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227 bool ResourceModificationJob::HandleTrailingStep() |
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228 { |
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229 throw OrthancException(ErrorCode_InternalError); |
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230 } |
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231 |
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232 |
| 2642 | 233 void ResourceModificationJob::SetModification(DicomModification* modification, |
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234 ResourceType level, |
| 2642 | 235 bool isAnonymization) |
| 236 { | |
| 237 if (modification == NULL) | |
| 238 { | |
| 239 throw OrthancException(ErrorCode_NullPointer); | |
| 240 } | |
| 241 else if (IsStarted()) | |
| 242 { | |
| 243 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 244 } | |
| 245 else | |
| 246 { | |
| 247 modification_.reset(modification); | |
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248 output_.reset(new Output(level)); |
| 2642 | 249 isAnonymization_ = isAnonymization; |
| 250 } | |
| 251 } | |
| 252 | |
| 253 | |
| 254 void ResourceModificationJob::SetOrigin(const DicomInstanceOrigin& origin) | |
| 255 { | |
| 256 if (IsStarted()) | |
| 257 { | |
| 258 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 259 } | |
| 260 else | |
| 261 { | |
| 262 origin_ = origin; | |
| 263 } | |
| 264 } | |
| 265 | |
| 266 | |
| 267 void ResourceModificationJob::SetOrigin(const RestApiCall& call) | |
| 268 { | |
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269 SetOrigin(DicomInstanceOrigin::FromRest(call)); |
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270 } |
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271 |
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272 |
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273 const DicomModification& ResourceModificationJob::GetModification() const |
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274 { |
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275 if (modification_.get() == NULL) |
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276 { |
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277 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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278 } |
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279 else |
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280 { |
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281 return *modification_; |
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282 } |
| 2642 | 283 } |
| 284 | |
| 285 | |
| 286 void ResourceModificationJob::GetPublicContent(Json::Value& value) | |
| 287 { | |
| 288 SetOfInstancesJob::GetPublicContent(value); | |
| 289 | |
| 290 value["IsAnonymization"] = isAnonymization_; | |
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291 |
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292 if (output_.get() != NULL) |
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293 { |
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294 output_->Format(value); |
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295 } |
| 2642 | 296 } |
| 297 | |
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298 |
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299 static const char* MODIFICATION = "Modification"; |
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300 static const char* ORIGIN = "Origin"; |
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301 static const char* IS_ANONYMIZATION = "IsAnonymization"; |
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302 |
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303 |
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304 ResourceModificationJob::ResourceModificationJob(ServerContext& context, |
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305 const Json::Value& serialized) : |
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306 SetOfInstancesJob(serialized), |
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307 context_(context) |
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308 { |
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309 isAnonymization_ = SerializationToolbox::ReadBoolean(serialized, IS_ANONYMIZATION); |
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310 origin_ = DicomInstanceOrigin(serialized[ORIGIN]); |
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311 modification_.reset(new DicomModification(serialized[MODIFICATION])); |
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312 } |
| 2642 | 313 |
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314 bool ResourceModificationJob::Serialize(Json::Value& value) |
| 2642 | 315 { |
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316 if (!SetOfInstancesJob::Serialize(value)) |
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317 { |
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318 return false; |
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319 } |
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320 else |
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321 { |
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322 value[IS_ANONYMIZATION] = isAnonymization_; |
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323 origin_.Serialize(value[ORIGIN]); |
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324 |
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325 Json::Value tmp; |
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326 modification_->Serialize(tmp); |
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327 value[MODIFICATION] = tmp; |
| 2642 | 328 |
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329 return true; |
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330 } |
| 2642 | 331 } |
| 332 } |