Mercurial > hg > orthanc
annotate OrthancFramework/Resources/Graveyard/TestTranscoding.cpp @ 5842:08e47734328e find-refactoring
StatelessDatabaseOperations: reimplementing GetAllUuids() and GetAllMetadata()
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 29 Oct 2024 12:46:11 +0000 |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium |
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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8 * |
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9 * This program is free software: you can redistribute it and/or |
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10 * modify it under the terms of the GNU Lesser General Public License |
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11 * as published by the Free Software Foundation, either version 3 of |
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12 * the License, or (at your option) any later version. |
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13 * |
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14 * This program is distributed in the hope that it will be useful, but |
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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17 * Lesser General Public License for more details. |
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18 * |
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19 * You should have received a copy of the GNU Lesser General Public |
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20 * License along with this program. If not, see |
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21 * <http://www.gnu.org/licenses/>. |
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22 **/ |
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23 |
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24 |
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25 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
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26 DcmFileFormat& dicom, |
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27 DicomTransferSyntax syntax) |
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28 { |
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29 E_TransferSyntax xfer; |
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30 if (!LookupDcmtkTransferSyntax(xfer, syntax)) |
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31 { |
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32 return false; |
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33 } |
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34 else if (!dicom.validateMetaInfo(xfer).good()) |
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35 { |
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36 throw OrthancException(ErrorCode_InternalError, |
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37 "Cannot setup the transfer syntax to write a DICOM instance"); |
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38 } |
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39 else |
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40 { |
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41 return SaveToMemoryBufferInternal(buffer, dicom, xfer); |
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42 } |
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43 } |
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45 |
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46 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
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47 DcmFileFormat& dicom) |
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48 { |
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49 E_TransferSyntax xfer = dicom.getDataset()->getCurrentXfer(); |
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50 if (xfer == EXS_Unknown) |
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51 { |
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52 throw OrthancException(ErrorCode_InternalError, |
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53 "Cannot write a DICOM instance with unknown transfer syntax"); |
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54 } |
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55 else if (!dicom.validateMetaInfo(xfer).good()) |
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56 { |
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57 throw OrthancException(ErrorCode_InternalError, |
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58 "Cannot setup the transfer syntax to write a DICOM instance"); |
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59 } |
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60 else |
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61 { |
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62 return SaveToMemoryBufferInternal(buffer, dicom, xfer); |
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63 } |
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64 } |
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65 |
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66 |
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67 |
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68 |
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69 |
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70 #include <dcmtk/dcmdata/dcostrmb.h> |
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71 #include <dcmtk/dcmdata/dcpixel.h> |
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72 #include <dcmtk/dcmdata/dcpxitem.h> |
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73 |
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74 #include "../Core/DicomParsing/Internals/DicomFrameIndex.h" |
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75 |
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76 namespace Orthanc |
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77 { |
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78 class IParsedDicomImage : public boost::noncopyable |
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79 { |
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80 public: |
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81 virtual ~IParsedDicomImage() |
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82 { |
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83 } |
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84 |
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85 virtual DicomTransferSyntax GetTransferSyntax() = 0; |
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86 |
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87 virtual std::string GetSopClassUid() = 0; |
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88 |
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89 virtual std::string GetSopInstanceUid() = 0; |
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90 |
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91 virtual unsigned int GetFramesCount() = 0; |
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92 |
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93 // Can return NULL, for compressed transfer syntaxes |
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94 virtual ImageAccessor* GetUncompressedFrame(unsigned int frame) = 0; |
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95 |
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96 virtual void GetCompressedFrame(std::string& target, |
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97 unsigned int frame) = 0; |
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98 |
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99 virtual void WriteToMemoryBuffer(std::string& target) = 0; |
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100 }; |
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101 |
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102 |
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103 class IDicomImageReader : public boost::noncopyable |
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104 { |
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105 public: |
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106 virtual ~IDicomImageReader() |
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107 { |
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108 } |
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109 |
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110 virtual IParsedDicomImage* Read(const void* data, |
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111 size_t size) = 0; |
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112 |
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113 virtual IParsedDicomImage* Transcode(const void* data, |
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114 size_t size, |
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115 DicomTransferSyntax syntax, |
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116 bool allowNewSopInstanceUid) = 0; |
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117 }; |
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118 |
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119 |
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120 class DcmtkImageReader : public IDicomImageReader |
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121 { |
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122 private: |
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123 class Image : public IParsedDicomImage |
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124 { |
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125 private: |
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126 std::unique_ptr<DcmFileFormat> dicom_; |
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127 std::unique_ptr<DicomFrameIndex> index_; |
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128 DicomTransferSyntax transferSyntax_; |
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129 std::string sopClassUid_; |
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130 std::string sopInstanceUid_; |
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131 |
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132 static std::string GetStringTag(DcmDataset& dataset, |
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133 const DcmTagKey& tag) |
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134 { |
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135 const char* value = NULL; |
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136 |
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137 if (!dataset.findAndGetString(tag, value).good() || |
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138 value == NULL) |
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139 { |
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140 throw OrthancException(ErrorCode_BadFileFormat, |
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141 "Missing SOP class/instance UID in DICOM instance"); |
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142 } |
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143 else |
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144 { |
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145 return std::string(value); |
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146 } |
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147 } |
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148 |
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149 public: |
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150 Image(DcmFileFormat* dicom, |
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151 DicomTransferSyntax syntax) : |
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152 dicom_(dicom), |
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153 transferSyntax_(syntax) |
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154 { |
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155 if (dicom == NULL || |
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156 dicom_->getDataset() == NULL) |
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157 { |
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158 throw OrthancException(ErrorCode_NullPointer); |
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159 } |
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160 |
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161 DcmDataset& dataset = *dicom_->getDataset(); |
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162 index_.reset(new DicomFrameIndex(dataset)); |
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163 |
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164 sopClassUid_ = GetStringTag(dataset, DCM_SOPClassUID); |
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165 sopInstanceUid_ = GetStringTag(dataset, DCM_SOPInstanceUID); |
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166 } |
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167 |
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168 virtual DicomTransferSyntax GetTransferSyntax() ORTHANC_OVERRIDE |
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169 { |
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170 return transferSyntax_; |
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171 } |
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172 |
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173 virtual std::string GetSopClassUid() ORTHANC_OVERRIDE |
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174 { |
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175 return sopClassUid_; |
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176 } |
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177 |
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178 virtual std::string GetSopInstanceUid() ORTHANC_OVERRIDE |
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179 { |
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180 return sopInstanceUid_; |
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181 } |
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182 |
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183 virtual unsigned int GetFramesCount() ORTHANC_OVERRIDE |
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184 { |
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185 return index_->GetFramesCount(); |
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186 } |
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187 |
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188 virtual void WriteToMemoryBuffer(std::string& target) ORTHANC_OVERRIDE |
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189 { |
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190 assert(dicom_.get() != NULL); |
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191 if (!FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, transferSyntax_)) |
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192 { |
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193 throw OrthancException(ErrorCode_InternalError, |
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194 "Cannot write the DICOM instance to a memory buffer"); |
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195 } |
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196 } |
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197 |
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198 virtual ImageAccessor* GetUncompressedFrame(unsigned int frame) ORTHANC_OVERRIDE |
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199 { |
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200 assert(dicom_.get() != NULL && |
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201 dicom_->getDataset() != NULL); |
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202 return DicomImageDecoder::Decode(*dicom_->getDataset(), frame); |
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203 } |
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204 |
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205 virtual void GetCompressedFrame(std::string& target, |
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206 unsigned int frame) ORTHANC_OVERRIDE |
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207 { |
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208 assert(index_.get() != NULL); |
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209 index_->GetRawFrame(target, frame); |
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210 } |
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211 }; |
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212 |
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213 unsigned int lossyQuality_; |
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214 |
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215 static DicomTransferSyntax DetectTransferSyntax(DcmFileFormat& dicom) |
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216 { |
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217 if (dicom.getDataset() == NULL) |
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218 { |
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219 throw OrthancException(ErrorCode_InternalError); |
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220 } |
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221 |
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222 DcmDataset& dataset = *dicom.getDataset(); |
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223 |
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224 E_TransferSyntax xfer = dataset.getCurrentXfer(); |
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225 if (xfer == EXS_Unknown) |
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226 { |
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227 dataset.updateOriginalXfer(); |
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228 xfer = dataset.getCurrentXfer(); |
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229 if (xfer == EXS_Unknown) |
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230 { |
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231 throw OrthancException(ErrorCode_BadFileFormat, |
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232 "Cannot determine the transfer syntax of the DICOM instance"); |
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233 } |
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234 } |
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235 |
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236 DicomTransferSyntax syntax; |
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237 if (FromDcmtkBridge::LookupOrthancTransferSyntax(syntax, xfer)) |
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238 { |
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239 return syntax; |
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240 } |
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241 else |
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242 { |
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243 throw OrthancException( |
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244 ErrorCode_BadFileFormat, |
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245 "Unsupported transfer syntax: " + boost::lexical_cast<std::string>(xfer)); |
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246 } |
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247 } |
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248 |
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249 |
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250 static uint16_t GetBitsStored(DcmFileFormat& dicom) |
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251 { |
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252 if (dicom.getDataset() == NULL) |
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253 { |
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254 throw OrthancException(ErrorCode_InternalError); |
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255 } |
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256 |
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257 uint16_t bitsStored; |
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258 if (dicom.getDataset()->findAndGetUint16(DCM_BitsStored, bitsStored).good()) |
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259 { |
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260 return bitsStored; |
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261 } |
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262 else |
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263 { |
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264 throw OrthancException(ErrorCode_BadFileFormat, |
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265 "Missing \"Bits Stored\" tag in DICOM instance"); |
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266 } |
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267 } |
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268 |
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269 |
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270 public: |
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271 DcmtkImageReader() : |
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272 lossyQuality_(90) |
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273 { |
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274 } |
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275 |
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276 void SetLossyQuality(unsigned int quality) |
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277 { |
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278 if (quality <= 0 || |
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279 quality > 100) |
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280 { |
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281 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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282 } |
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283 else |
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284 { |
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285 lossyQuality_ = quality; |
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286 } |
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287 } |
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288 |
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289 unsigned int GetLossyQuality() const |
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290 { |
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291 return lossyQuality_; |
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292 } |
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293 |
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294 virtual IParsedDicomImage* Read(const void* data, |
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295 size_t size) |
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296 { |
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297 std::unique_ptr<DcmFileFormat> dicom(FromDcmtkBridge::LoadFromMemoryBuffer(data, size)); |
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298 if (dicom.get() == NULL) |
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299 { |
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300 throw OrthancException(ErrorCode_BadFileFormat); |
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301 } |
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302 |
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303 DicomTransferSyntax transferSyntax = DetectTransferSyntax(*dicom); |
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304 |
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305 return new Image(dicom.release(), transferSyntax); |
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306 } |
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307 |
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308 virtual IParsedDicomImage* Transcode(const void* data, |
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309 size_t size, |
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310 DicomTransferSyntax syntax, |
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311 bool allowNewSopInstanceUid) |
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312 { |
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313 std::unique_ptr<DcmFileFormat> dicom(FromDcmtkBridge::LoadFromMemoryBuffer(data, size)); |
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314 if (dicom.get() == NULL) |
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315 { |
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316 throw OrthancException(ErrorCode_BadFileFormat); |
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317 } |
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318 |
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319 const uint16_t bitsStored = GetBitsStored(*dicom); |
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320 |
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321 if (syntax == DetectTransferSyntax(*dicom)) |
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322 { |
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323 // No transcoding is needed |
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324 return new Image(dicom.release(), syntax); |
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325 } |
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326 |
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327 if (syntax == DicomTransferSyntax_LittleEndianImplicit && |
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328 FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_LittleEndianImplicit, NULL)) |
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329 { |
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330 return new Image(dicom.release(), syntax); |
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331 } |
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332 |
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333 if (syntax == DicomTransferSyntax_LittleEndianExplicit && |
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334 FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_LittleEndianExplicit, NULL)) |
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335 { |
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336 return new Image(dicom.release(), syntax); |
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337 } |
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338 |
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339 if (syntax == DicomTransferSyntax_BigEndianExplicit && |
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340 FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_BigEndianExplicit, NULL)) |
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341 { |
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342 return new Image(dicom.release(), syntax); |
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343 } |
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344 |
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345 if (syntax == DicomTransferSyntax_DeflatedLittleEndianExplicit && |
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346 FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_DeflatedLittleEndianExplicit, NULL)) |
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347 { |
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348 return new Image(dicom.release(), syntax); |
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349 } |
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350 |
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351 #if ORTHANC_ENABLE_JPEG == 1 |
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352 if (syntax == DicomTransferSyntax_JPEGProcess1 && |
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353 allowNewSopInstanceUid && |
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354 bitsStored == 8) |
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355 { |
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356 DJ_RPLossy rpLossy(lossyQuality_); |
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357 |
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358 if (FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_JPEGProcess1, &rpLossy)) |
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359 { |
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360 return new Image(dicom.release(), syntax); |
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361 } |
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362 } |
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363 #endif |
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364 |
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365 #if ORTHANC_ENABLE_JPEG == 1 |
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366 if (syntax == DicomTransferSyntax_JPEGProcess2_4 && |
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367 allowNewSopInstanceUid && |
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368 bitsStored <= 12) |
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369 { |
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370 DJ_RPLossy rpLossy(lossyQuality_); |
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371 if (FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_JPEGProcess2_4, &rpLossy)) |
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372 { |
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373 return new Image(dicom.release(), syntax); |
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374 } |
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375 } |
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376 #endif |
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377 |
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378 //LOG(INFO) << "Unable to transcode DICOM image using the built-in reader"; |
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379 return NULL; |
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380 } |
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381 }; |
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382 |
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383 |
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384 |
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385 class IDicomTranscoder1 : public boost::noncopyable |
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386 { |
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387 public: |
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388 virtual ~IDicomTranscoder1() |
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389 { |
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390 } |
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391 |
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392 virtual DcmFileFormat& GetDicom() = 0; |
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393 |
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394 virtual DicomTransferSyntax GetTransferSyntax() = 0; |
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395 |
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396 virtual std::string GetSopClassUid() = 0; |
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397 |
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398 virtual std::string GetSopInstanceUid() = 0; |
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399 |
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400 virtual unsigned int GetFramesCount() = 0; |
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401 |
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402 virtual ImageAccessor* DecodeFrame(unsigned int frame) = 0; |
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403 |
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404 virtual void GetCompressedFrame(std::string& target, |
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405 unsigned int frame) = 0; |
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406 |
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407 // NB: Transcoding can change the value of "GetSopInstanceUid()" |
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408 // and "GetTransferSyntax()" if lossy compression is applied |
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409 virtual bool Transcode(std::string& target, |
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410 DicomTransferSyntax syntax, |
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411 bool allowNewSopInstanceUid) = 0; |
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412 |
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413 virtual void WriteToMemoryBuffer(std::string& target) = 0; |
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414 }; |
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415 |
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416 |
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417 class DcmtkTranscoder2 : public IDicomTranscoder1 |
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418 { |
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419 private: |
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420 std::unique_ptr<DcmFileFormat> dicom_; |
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421 std::unique_ptr<DicomFrameIndex> index_; |
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422 DicomTransferSyntax transferSyntax_; |
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423 std::string sopClassUid_; |
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424 std::string sopInstanceUid_; |
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425 uint16_t bitsStored_; |
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426 unsigned int lossyQuality_; |
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427 |
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428 static std::string GetStringTag(DcmDataset& dataset, |
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429 const DcmTagKey& tag) |
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430 { |
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431 const char* value = NULL; |
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432 |
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433 if (!dataset.findAndGetString(tag, value).good() || |
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434 value == NULL) |
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435 { |
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436 throw OrthancException(ErrorCode_BadFileFormat, |
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437 "Missing SOP class/instance UID in DICOM instance"); |
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438 } |
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439 else |
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440 { |
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441 return std::string(value); |
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442 } |
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443 } |
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444 |
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445 void Setup(DcmFileFormat* dicom) |
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446 { |
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447 lossyQuality_ = 90; |
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448 |
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449 dicom_.reset(dicom); |
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450 |
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451 if (dicom == NULL || |
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452 dicom_->getDataset() == NULL) |
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453 { |
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454 throw OrthancException(ErrorCode_NullPointer); |
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455 } |
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456 |
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457 DcmDataset& dataset = *dicom_->getDataset(); |
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458 index_.reset(new DicomFrameIndex(dataset)); |
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459 |
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460 E_TransferSyntax xfer = dataset.getCurrentXfer(); |
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461 if (xfer == EXS_Unknown) |
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462 { |
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463 dataset.updateOriginalXfer(); |
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464 xfer = dataset.getCurrentXfer(); |
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465 if (xfer == EXS_Unknown) |
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466 { |
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467 throw OrthancException(ErrorCode_BadFileFormat, |
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468 "Cannot determine the transfer syntax of the DICOM instance"); |
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469 } |
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470 } |
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471 |
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472 if (!FromDcmtkBridge::LookupOrthancTransferSyntax(transferSyntax_, xfer)) |
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473 { |
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474 throw OrthancException( |
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475 ErrorCode_BadFileFormat, |
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476 "Unsupported transfer syntax: " + boost::lexical_cast<std::string>(xfer)); |
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477 } |
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478 |
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479 if (!dataset.findAndGetUint16(DCM_BitsStored, bitsStored_).good()) |
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480 { |
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481 throw OrthancException(ErrorCode_BadFileFormat, |
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482 "Missing \"Bits Stored\" tag in DICOM instance"); |
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483 } |
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484 |
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485 sopClassUid_ = GetStringTag(dataset, DCM_SOPClassUID); |
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486 sopInstanceUid_ = GetStringTag(dataset, DCM_SOPInstanceUID); |
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487 } |
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488 |
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489 public: |
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490 DcmtkTranscoder2(DcmFileFormat* dicom) // Takes ownership |
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491 { |
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492 Setup(dicom); |
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493 } |
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494 |
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495 DcmtkTranscoder2(const void* dicom, |
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496 size_t size) |
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497 { |
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498 Setup(FromDcmtkBridge::LoadFromMemoryBuffer(dicom, size)); |
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499 } |
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500 |
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501 void SetLossyQuality(unsigned int quality) |
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502 { |
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503 if (quality <= 0 || |
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504 quality > 100) |
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505 { |
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506 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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507 } |
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508 else |
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509 { |
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510 lossyQuality_ = quality; |
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511 } |
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512 } |
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513 |
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514 unsigned int GetLossyQuality() const |
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515 { |
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516 return lossyQuality_; |
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517 } |
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518 |
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519 unsigned int GetBitsStored() const |
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520 { |
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521 return bitsStored_; |
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522 } |
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523 |
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524 virtual DcmFileFormat& GetDicom() |
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525 { |
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526 assert(dicom_ != NULL); |
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527 return *dicom_; |
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parents:
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|
528 } |
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529 |
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530 virtual DicomTransferSyntax GetTransferSyntax() ORTHANC_OVERRIDE |
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531 { |
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532 return transferSyntax_; |
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parents:
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533 } |
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|
534 |
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535 virtual std::string GetSopClassUid() ORTHANC_OVERRIDE |
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536 { |
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537 return sopClassUid_; |
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538 } |
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|
539 |
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540 virtual std::string GetSopInstanceUid() ORTHANC_OVERRIDE |
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|
541 { |
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542 return sopInstanceUid_; |
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parents:
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543 } |
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parents:
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|
544 |
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|
545 virtual unsigned int GetFramesCount() ORTHANC_OVERRIDE |
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parents:
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|
546 { |
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547 return index_->GetFramesCount(); |
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parents:
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|
548 } |
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parents:
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|
549 |
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parents:
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|
550 virtual void WriteToMemoryBuffer(std::string& target) ORTHANC_OVERRIDE |
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551 { |
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552 if (!FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_)) |
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|
553 { |
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554 throw OrthancException(ErrorCode_InternalError, |
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555 "Cannot write the DICOM instance to a memory buffer"); |
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parents:
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|
556 } |
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|
557 } |
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|
558 |
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559 virtual ImageAccessor* DecodeFrame(unsigned int frame) ORTHANC_OVERRIDE |
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parents:
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560 { |
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561 assert(dicom_->getDataset() != NULL); |
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parents:
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562 return DicomImageDecoder::Decode(*dicom_->getDataset(), frame); |
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parents:
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|
563 } |
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parents:
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|
564 |
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565 virtual void GetCompressedFrame(std::string& target, |
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|
566 unsigned int frame) ORTHANC_OVERRIDE |
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parents:
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|
567 { |
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parents:
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|
568 index_->GetRawFrame(target, frame); |
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parents:
diff
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|
569 } |
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parents:
diff
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|
570 |
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parents:
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|
571 virtual bool Transcode(std::string& target, |
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572 DicomTransferSyntax syntax, |
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parents:
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573 bool allowNewSopInstanceUid) ORTHANC_OVERRIDE |
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parents:
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|
574 { |
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|
575 assert(dicom_ != NULL && |
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parents:
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|
576 dicom_->getDataset() != NULL); |
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parents:
diff
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|
577 |
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578 if (syntax == GetTransferSyntax()) |
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parents:
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|
579 { |
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580 printf("NO TRANSCODING\n"); |
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parents:
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|
581 |
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|
582 // No change in the transfer syntax => simply serialize the current dataset |
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583 WriteToMemoryBuffer(target); |
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584 return true; |
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parents:
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|
585 } |
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parents:
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changeset
|
586 |
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|
587 printf(">> %d\n", bitsStored_); |
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parents:
diff
changeset
|
588 |
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|
589 if (syntax == DicomTransferSyntax_LittleEndianImplicit && |
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|
590 FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && |
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parents:
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|
591 FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) |
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|
592 { |
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593 transferSyntax_ = DicomTransferSyntax_LittleEndianImplicit; |
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594 return true; |
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parents:
diff
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|
595 } |
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changeset
|
596 |
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parents:
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changeset
|
597 if (syntax == DicomTransferSyntax_LittleEndianExplicit && |
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parents:
diff
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598 FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && |
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599 FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) |
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|
600 { |
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|
601 transferSyntax_ = DicomTransferSyntax_LittleEndianExplicit; |
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|
602 return true; |
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parents:
diff
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|
603 } |
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changeset
|
604 |
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|
605 if (syntax == DicomTransferSyntax_BigEndianExplicit && |
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|
606 FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && |
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607 FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) |
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|
608 { |
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|
609 transferSyntax_ = DicomTransferSyntax_BigEndianExplicit; |
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610 return true; |
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parents:
diff
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|
611 } |
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parents:
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changeset
|
612 |
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|
613 if (syntax == DicomTransferSyntax_DeflatedLittleEndianExplicit && |
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parents:
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|
614 FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && |
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615 FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) |
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|
616 { |
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|
617 transferSyntax_ = DicomTransferSyntax_DeflatedLittleEndianExplicit; |
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618 return true; |
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|
619 } |
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|
620 |
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|
621 #if ORTHANC_ENABLE_JPEG == 1 |
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|
622 if (syntax == DicomTransferSyntax_JPEGProcess1 && |
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|
623 allowNewSopInstanceUid && |
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624 GetBitsStored() == 8) |
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changeset
|
625 { |
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|
626 DJ_RPLossy rpLossy(lossyQuality_); |
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parents:
diff
changeset
|
627 |
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parents:
diff
changeset
|
628 if (FromDcmtkBridge::Transcode(*dicom_, syntax, &rpLossy) && |
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629 FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) |
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630 { |
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631 transferSyntax_ = DicomTransferSyntax_JPEGProcess1; |
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632 sopInstanceUid_ = GetStringTag(*dicom_->getDataset(), DCM_SOPInstanceUID); |
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633 return true; |
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634 } |
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635 } |
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636 #endif |
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637 |
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638 #if ORTHANC_ENABLE_JPEG == 1 |
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639 if (syntax == DicomTransferSyntax_JPEGProcess2_4 && |
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640 allowNewSopInstanceUid && |
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641 GetBitsStored() <= 12) |
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642 { |
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643 DJ_RPLossy rpLossy(lossyQuality_); |
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644 if (FromDcmtkBridge::Transcode(*dicom_, syntax, &rpLossy) && |
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645 FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) |
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646 { |
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647 transferSyntax_ = DicomTransferSyntax_JPEGProcess2_4; |
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648 sopInstanceUid_ = GetStringTag(*dicom_->getDataset(), DCM_SOPInstanceUID); |
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649 return true; |
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650 } |
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651 } |
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652 #endif |
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653 |
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654 return false; |
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655 } |
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656 }; |
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657 } |
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|
658 |
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|
659 |
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|
660 |
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661 |
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662 #include <boost/filesystem.hpp> |
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663 |
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|
664 |
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665 static void TestFile(const std::string& path) |
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666 { |
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667 static unsigned int count = 0; |
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668 count++; |
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|
669 |
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670 |
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671 printf("** %s\n", path.c_str()); |
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672 |
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673 std::string s; |
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674 SystemToolbox::ReadFile(s, path); |
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|
675 |
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676 Orthanc::DcmtkTranscoder2 transcoder(s.c_str(), s.size()); |
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|
677 |
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678 /*if (transcoder.GetBitsStored() != 8) // TODO |
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679 return; */ |
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|
680 |
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|
681 { |
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|
682 char buf[1024]; |
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683 sprintf(buf, "/tmp/source-%06d.dcm", count); |
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684 printf(">> %s\n", buf); |
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|
685 Orthanc::SystemToolbox::WriteFile(s, buf); |
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|
686 } |
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|
687 |
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|
688 printf("[%s] [%s] [%s] %d %d\n", GetTransferSyntaxUid(transcoder.GetTransferSyntax()), |
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689 transcoder.GetSopClassUid().c_str(), transcoder.GetSopInstanceUid().c_str(), |
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690 transcoder.GetFramesCount(), transcoder.GetTransferSyntax()); |
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parents:
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|
691 |
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692 for (size_t i = 0; i < transcoder.GetFramesCount(); i++) |
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|
693 { |
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|
694 std::string f; |
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|
695 transcoder.GetCompressedFrame(f, i); |
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|
696 |
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|
697 if (i == 0) |
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|
698 { |
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parents:
diff
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|
699 char buf[1024]; |
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|
700 sprintf(buf, "/tmp/frame-%06d.raw", count); |
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|
701 printf(">> %s\n", buf); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
702 Orthanc::SystemToolbox::WriteFile(f, buf); |
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parents:
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|
703 } |
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parents:
diff
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|
704 } |
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parents:
diff
changeset
|
705 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
706 { |
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parents:
diff
changeset
|
707 std::string t; |
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parents:
diff
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|
708 transcoder.WriteToMemoryBuffer(t); |
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parents:
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|
709 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
710 Orthanc::DcmtkTranscoder2 transcoder2(t.c_str(), t.size()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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711 printf(">> %d %d ; %lu bytes\n", transcoder.GetTransferSyntax(), transcoder2.GetTransferSyntax(), t.size()); |
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|
712 } |
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parents:
diff
changeset
|
713 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
714 { |
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|
715 std::string a = transcoder.GetSopInstanceUid(); |
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parents:
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|
716 DicomTransferSyntax b = transcoder.GetTransferSyntax(); |
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parents:
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changeset
|
717 |
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parents:
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|
718 DicomTransferSyntax syntax = DicomTransferSyntax_JPEGProcess2_4; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
719 //DicomTransferSyntax syntax = DicomTransferSyntax_LittleEndianExplicit; |
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parents:
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changeset
|
720 |
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parents:
diff
changeset
|
721 std::string t; |
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parents:
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|
722 bool ok = transcoder.Transcode(t, syntax, true); |
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parents:
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|
723 printf("Transcoding: %d\n", ok); |
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parents:
diff
changeset
|
724 |
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parents:
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changeset
|
725 if (ok) |
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parents:
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changeset
|
726 { |
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parents:
diff
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|
727 printf("[%s] => [%s]\n", a.c_str(), transcoder.GetSopInstanceUid().c_str()); |
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parents:
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|
728 printf("[%s] => [%s]\n", GetTransferSyntaxUid(b), |
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parents:
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|
729 GetTransferSyntaxUid(transcoder.GetTransferSyntax())); |
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parents:
diff
changeset
|
730 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
731 { |
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|
732 char buf[1024]; |
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parents:
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|
733 sprintf(buf, "/tmp/transcoded-%06d.dcm", count); |
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parents:
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changeset
|
734 printf(">> %s\n", buf); |
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parents:
diff
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|
735 Orthanc::SystemToolbox::WriteFile(t, buf); |
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parents:
diff
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|
736 } |
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parents:
diff
changeset
|
737 |
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parents:
diff
changeset
|
738 Orthanc::DcmtkTranscoder2 transcoder2(t.c_str(), t.size()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
739 printf(" => transcoded transfer syntax %d ; %lu bytes\n", transcoder2.GetTransferSyntax(), t.size()); |
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parents:
diff
changeset
|
740 } |
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parents:
diff
changeset
|
741 } |
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parents:
diff
changeset
|
742 |
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parents:
diff
changeset
|
743 printf("\n"); |
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parents:
diff
changeset
|
744 } |
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parents:
diff
changeset
|
745 |
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parents:
diff
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|
746 TEST(Toto, DISABLED_Transcode) |
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parents:
diff
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|
747 { |
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diff
changeset
|
748 //OFLog::configure(OFLogger::DEBUG_LOG_LEVEL); |
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parents:
diff
changeset
|
749 |
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parents:
diff
changeset
|
750 if (1) |
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parents:
diff
changeset
|
751 { |
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parents:
diff
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|
752 const char* const PATH = "/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes"; |
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753 |
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754 for (boost::filesystem::directory_iterator it(PATH); |
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755 it != boost::filesystem::directory_iterator(); ++it) |
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756 { |
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757 if (boost::filesystem::is_regular_file(it->status())) |
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758 { |
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759 TestFile(it->path().string()); |
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760 } |
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761 } |
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|
762 } |
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|
763 |
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764 if (0) |
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765 { |
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766 TestFile("/home/jodogne/Subversion/orthanc-tests/Database/Multiframe.dcm"); |
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767 TestFile("/home/jodogne/Subversion/orthanc-tests/Database/Issue44/Monochrome1-Jpeg.dcm"); |
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768 } |
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769 |
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770 if (0) |
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|
771 { |
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772 TestFile("/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes/1.2.840.10008.1.2.1.dcm"); |
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773 } |
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|
774 } |
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|
775 |
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|
776 |
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777 TEST(Toto, DISABLED_Transcode2) |
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778 { |
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779 for (int i = 0; i <= DicomTransferSyntax_XML; i++) |
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780 { |
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781 DicomTransferSyntax a = (DicomTransferSyntax) i; |
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782 |
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783 std::string path = ("/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes/" + |
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784 std::string(GetTransferSyntaxUid(a)) + ".dcm"); |
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parents:
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785 if (Orthanc::SystemToolbox::IsRegularFile(path)) |
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786 { |
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787 printf("\n======= %s\n", GetTransferSyntaxUid(a)); |
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|
788 |
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789 std::string source; |
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|
790 Orthanc::SystemToolbox::ReadFile(source, path); |
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791 |
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792 DcmtkImageReader reader; |
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793 |
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794 { |
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795 std::unique_ptr<IParsedDicomImage> image( |
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796 reader.Read(source.c_str(), source.size())); |
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797 ASSERT_TRUE(image.get() != NULL); |
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798 ASSERT_EQ(a, image->GetTransferSyntax()); |
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|
799 |
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800 std::string target; |
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801 image->WriteToMemoryBuffer(target); |
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|
802 } |
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|
803 |
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804 for (int j = 0; j <= DicomTransferSyntax_XML; j++) |
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805 { |
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|
806 DicomTransferSyntax b = (DicomTransferSyntax) j; |
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807 //if (a == b) continue; |
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|
808 |
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809 std::unique_ptr<IParsedDicomImage> image( |
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810 reader.Transcode(source.c_str(), source.size(), b, true)); |
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811 if (image.get() != NULL) |
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|
812 { |
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|
813 printf("[%s] -> [%s]\n", GetTransferSyntaxUid(a), GetTransferSyntaxUid(b)); |
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|
814 |
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|
815 std::string target; |
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|
816 image->WriteToMemoryBuffer(target); |
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|
817 |
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|
818 char buf[1024]; |
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819 sprintf(buf, "/tmp/%s-%s.dcm", GetTransferSyntaxUid(a), GetTransferSyntaxUid(b)); |
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|
820 |
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821 SystemToolbox::WriteFile(target, buf); |
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822 } |
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823 else if (a != DicomTransferSyntax_JPEG2000 && |
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824 a != DicomTransferSyntax_JPEG2000LosslessOnly) |
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825 { |
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826 ASSERT_TRUE(b != DicomTransferSyntax_LittleEndianImplicit && |
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827 b != DicomTransferSyntax_LittleEndianExplicit && |
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828 b != DicomTransferSyntax_BigEndianExplicit && |
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829 b != DicomTransferSyntax_DeflatedLittleEndianExplicit); |
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|
830 } |
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|
831 } |
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|
832 } |
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|
833 } |
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|
834 } |
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|
835 |
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|
836 |
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837 #include "../Core/DicomNetworking/DicomAssociation.h" |
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838 #include "../Core/DicomNetworking/DicomControlUserConnection.h" |
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839 #include "../Core/DicomNetworking/DicomStoreUserConnection.h" |
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840 |
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841 TEST(Toto, DISABLED_DicomAssociation) |
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|
842 { |
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843 DicomAssociationParameters params; |
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844 params.SetLocalApplicationEntityTitle("ORTHANC"); |
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845 params.SetRemoteApplicationEntityTitle("PACS"); |
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846 params.SetRemotePort(2001); |
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|
847 |
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|
848 #if 0 |
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849 DicomAssociation assoc; |
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850 assoc.ProposeGenericPresentationContext(UID_StorageCommitmentPushModelSOPClass); |
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851 assoc.ProposeGenericPresentationContext(UID_VerificationSOPClass); |
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852 assoc.ProposePresentationContext(UID_ComputedRadiographyImageStorage, |
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|
853 DicomTransferSyntax_JPEGProcess1); |
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854 assoc.ProposePresentationContext(UID_ComputedRadiographyImageStorage, |
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|
855 DicomTransferSyntax_JPEGProcess2_4); |
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856 assoc.ProposePresentationContext(UID_ComputedRadiographyImageStorage, |
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857 DicomTransferSyntax_JPEG2000); |
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|
858 |
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859 assoc.Open(params); |
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|
860 |
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|
861 int presID = ASC_findAcceptedPresentationContextID(&assoc.GetDcmtkAssociation(), UID_ComputedRadiographyImageStorage); |
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862 printf(">> %d\n", presID); |
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|
863 |
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864 std::map<DicomTransferSyntax, uint8_t> pc; |
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865 printf(">> %d\n", assoc.LookupAcceptedPresentationContext(pc, UID_ComputedRadiographyImageStorage)); |
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|
866 |
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|
867 for (std::map<DicomTransferSyntax, uint8_t>::const_iterator |
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868 it = pc.begin(); it != pc.end(); ++it) |
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diff
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|
869 { |
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|
870 printf("[%s] => %d\n", GetTransferSyntaxUid(it->first), it->second); |
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|
871 } |
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|
872 #else |
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|
873 { |
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874 DicomControlUserConnection assoc(params); |
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|
875 |
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|
876 try |
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|
877 { |
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878 printf(">> %d\n", assoc.Echo()); |
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879 } |
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880 catch (OrthancException&) |
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881 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
882 } |
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|
883 } |
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|
884 |
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885 params.SetRemoteApplicationEntityTitle("PACS"); |
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886 params.SetRemotePort(2000); |
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parents:
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|
887 |
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|
888 { |
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|
889 DicomControlUserConnection assoc(params); |
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890 printf(">> %d\n", assoc.Echo()); |
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|
891 } |
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parents:
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|
892 |
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893 #endif |
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|
894 } |
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parents:
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|
895 |
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896 static void TestTranscode(DicomStoreUserConnection& scu, |
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897 const std::string& sopClassUid, |
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898 DicomTransferSyntax transferSyntax) |
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parents:
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|
899 { |
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900 std::set<DicomTransferSyntax> accepted; |
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parents:
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|
901 |
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parents:
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|
902 scu.LookupTranscoding(accepted, sopClassUid, transferSyntax); |
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903 if (accepted.empty()) |
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|
904 { |
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|
905 throw OrthancException(ErrorCode_NetworkProtocol, |
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parents:
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|
906 "The SOP class is not supported by the remote modality"); |
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parents:
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|
907 } |
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parents:
diff
changeset
|
908 |
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parents:
diff
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|
909 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
910 unsigned int count = 0; |
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parents:
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|
911 for (std::set<DicomTransferSyntax>::const_iterator |
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parents:
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912 it = accepted.begin(); it != accepted.end(); ++it) |
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parents:
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|
913 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
914 LOG(INFO) << "available for transcoding " << (count++) << ": " << sopClassUid |
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parents:
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|
915 << " / " << GetTransferSyntaxUid(*it); |
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parents:
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|
916 } |
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parents:
diff
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|
917 } |
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parents:
diff
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|
918 |
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parents:
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|
919 if (accepted.find(transferSyntax) != accepted.end()) |
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parents:
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|
920 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
921 printf("**** OK, without transcoding !! [%s]\n", GetTransferSyntaxUid(transferSyntax)); |
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parents:
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|
922 } |
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parents:
diff
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|
923 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
924 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
925 // Transcoding - only in Orthanc >= 1.7.0 |
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parents:
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|
926 |
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parents:
diff
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|
927 const DicomTransferSyntax uncompressed[] = { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
928 DicomTransferSyntax_LittleEndianImplicit, // Default transfer syntax |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
929 DicomTransferSyntax_LittleEndianExplicit, |
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parents:
diff
changeset
|
930 DicomTransferSyntax_BigEndianExplicit |
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parents:
diff
changeset
|
931 }; |
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parents:
diff
changeset
|
932 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
933 bool found = false; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
934 for (size_t i = 0; i < 3; i++) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
935 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
936 if (accepted.find(uncompressed[i]) != accepted.end()) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
937 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
938 printf("**** TRANSCODING to %s\n", GetTransferSyntaxUid(uncompressed[i])); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
939 found = true; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
940 break; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
941 } |
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parents:
diff
changeset
|
942 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
943 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
944 if (!found) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
945 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
946 printf("**** KO KO KO\n"); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
947 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
948 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
949 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
950 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
951 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
952 TEST(Toto, DISABLED_Store) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
953 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
954 DicomAssociationParameters params; |
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parents:
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|
955 params.SetLocalApplicationEntityTitle("ORTHANC"); |
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parents:
diff
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|
956 params.SetRemoteApplicationEntityTitle("STORESCP"); |
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parents:
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|
957 params.SetRemotePort(2000); |
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parents:
diff
changeset
|
958 |
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diff
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|
959 DicomStoreUserConnection assoc(params); |
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parents:
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|
960 assoc.RegisterStorageClass(UID_MRImageStorage, DicomTransferSyntax_JPEGProcess1); |
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parents:
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changeset
|
961 assoc.RegisterStorageClass(UID_MRImageStorage, DicomTransferSyntax_JPEGProcess2_4); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
962 //assoc.RegisterStorageClass(UID_MRImageStorage, DicomTransferSyntax_LittleEndianExplicit); |
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parents:
diff
changeset
|
963 |
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|
964 //assoc.SetUncompressedSyntaxesProposed(false); // Necessary for transcoding |
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|
965 assoc.SetCommonClassesProposed(false); |
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parents:
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|
966 assoc.SetRetiredBigEndianProposed(true); |
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|
967 TestTranscode(assoc, UID_MRImageStorage, DicomTransferSyntax_LittleEndianExplicit); |
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|
968 TestTranscode(assoc, UID_MRImageStorage, DicomTransferSyntax_JPEG2000); |
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|
969 TestTranscode(assoc, UID_MRImageStorage, DicomTransferSyntax_JPEG2000); |
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parents:
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|
970 } |
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parents:
diff
changeset
|
971 |
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parents:
diff
changeset
|
972 |
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|
973 TEST(Toto, DISABLED_Store2) |
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parents:
diff
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|
974 { |
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|
975 DicomAssociationParameters params; |
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diff
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|
976 params.SetLocalApplicationEntityTitle("ORTHANC"); |
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parents:
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|
977 params.SetRemoteApplicationEntityTitle("STORESCP"); |
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|
978 params.SetRemotePort(2000); |
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diff
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|
979 |
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|
980 DicomStoreUserConnection assoc(params); |
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|
981 //assoc.SetCommonClassesProposed(false); |
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parents:
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|
982 assoc.SetRetiredBigEndianProposed(true); |
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parents:
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|
983 |
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parents:
diff
changeset
|
984 std::string s; |
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diff
changeset
|
985 Orthanc::SystemToolbox::ReadFile(s, "/tmp/i/" + std::string(GetTransferSyntaxUid(DicomTransferSyntax_BigEndianExplicit)) +".dcm"); |
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parents:
diff
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|
986 |
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diff
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|
987 std::string c, i; |
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|
988 assoc.Store(c, i, s.c_str(), s.size()); |
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parents:
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|
989 printf("[%s] [%s]\n", c.c_str(), i.c_str()); |
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diff
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|
990 } |
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parents:
diff
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|
991 |