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annotate OrthancFramework/Sources/FileStorage/StorageAccessor.cpp @ 5398:08b5516c6e5e

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compatibility of OrthancFramework with latest releases of Emscripten
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 11 Oct 2023 15:26:45 +0200
parents b376abae664a
children aaf7c49a9ddc d37dff2c0028
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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23
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24 #include "../PrecompiledHeaders.h"
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25 #include "StorageAccessor.h"
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26 #include "StorageCache.h"
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27
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28 #include "../Logging.h"
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29 #include "../StringMemoryBuffer.h"
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30 #include "../Compatibility.h"
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31 #include "../Compression/ZlibCompressor.h"
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32 #include "../MetricsRegistry.h"
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33 #include "../OrthancException.h"
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34 #include "../Toolbox.h"
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35
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36 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
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37 # include "../HttpServer/HttpStreamTranscoder.h"
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38 #endif
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39
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40
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41 static const std::string METRICS_CREATE_DURATION = "orthanc_storage_create_duration_ms";
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42 static const std::string METRICS_READ_DURATION = "orthanc_storage_read_duration_ms";
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43 static const std::string METRICS_REMOVE_DURATION = "orthanc_storage_remove_duration_ms";
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44 static const std::string METRICS_READ_BYTES = "orthanc_storage_read_bytes";
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45 static const std::string METRICS_WRITTEN_BYTES = "orthanc_storage_written_bytes";
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47
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48 namespace Orthanc
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49 {
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50 class StorageAccessor::MetricsTimer : public boost::noncopyable
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51 {
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52 private:
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53 std::unique_ptr<MetricsRegistry::Timer> timer_;
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55 public:
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56 MetricsTimer(StorageAccessor& that,
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57 const std::string& name)
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58 {
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59 if (that.metrics_ != NULL)
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60 {
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61 timer_.reset(new MetricsRegistry::Timer(*that.metrics_, name));
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62 }
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63 }
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64 };
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65
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66
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67 StorageAccessor::StorageAccessor(IStorageArea& area) :
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68 area_(area),
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69 cache_(NULL),
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70 metrics_(NULL)
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71 {
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72 }
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73
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74
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75 StorageAccessor::StorageAccessor(IStorageArea& area,
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76 StorageCache& cache) :
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77 area_(area),
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78 cache_(&cache),
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79 metrics_(NULL)
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80 {
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81 }
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82
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83
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84 StorageAccessor::StorageAccessor(IStorageArea& area,
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85 MetricsRegistry& metrics) :
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86 area_(area),
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87 cache_(NULL),
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88 metrics_(&metrics)
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89 {
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90 }
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91
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92 StorageAccessor::StorageAccessor(IStorageArea& area,
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93 StorageCache& cache,
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94 MetricsRegistry& metrics) :
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95 area_(area),
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96 cache_(&cache),
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97 metrics_(&metrics)
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98 {
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99 }
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100
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101
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102 FileInfo StorageAccessor::Write(const void* data,
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103 size_t size,
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104 FileContentType type,
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105 CompressionType compression,
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106 bool storeMd5)
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107 {
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108 std::string uuid = Toolbox::GenerateUuid();
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109
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110 std::string md5;
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111
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112 if (storeMd5)
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113 {
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114 Toolbox::ComputeMD5(md5, data, size);
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115 }
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116
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117 switch (compression)
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118 {
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119 case CompressionType_None:
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120 {
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121 {
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122 MetricsTimer timer(*this, METRICS_CREATE_DURATION);
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123 area_.Create(uuid, data, size, type);
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124 }
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125
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126 if (metrics_ != NULL)
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127 {
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128 metrics_->IncrementIntegerValue(METRICS_WRITTEN_BYTES, size);
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129 }
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130
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131 if (cache_ != NULL)
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132 {
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133 cache_->Add(uuid, type, data, size);
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134 }
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135
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136 return FileInfo(uuid, type, size, md5);
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137 }
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138
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139 case CompressionType_ZlibWithSize:
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140 {
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141 ZlibCompressor zlib;
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142
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143 std::string compressed;
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144 zlib.Compress(compressed, data, size);
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145
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146 std::string compressedMD5;
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147
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148 if (storeMd5)
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149 {
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150 Toolbox::ComputeMD5(compressedMD5, compressed);
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151 }
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152
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153 {
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154 MetricsTimer timer(*this, METRICS_CREATE_DURATION);
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155
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156 if (compressed.size() > 0)
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157 {
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158 area_.Create(uuid, &compressed[0], compressed.size(), type);
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159 }
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160 else
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161 {
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162 area_.Create(uuid, NULL, 0, type);
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163 }
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164 }
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165
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166 if (metrics_ != NULL)
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167 {
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168 metrics_->IncrementIntegerValue(METRICS_WRITTEN_BYTES, compressed.size());
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169 }
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170
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171 if (cache_ != NULL)
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172 {
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173 cache_->Add(uuid, type, data, size); // always add uncompressed data to cache
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174 }
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175
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176 return FileInfo(uuid, type, size, md5,
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177 CompressionType_ZlibWithSize, compressed.size(), compressedMD5);
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178 }
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179
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180 default:
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181 throw OrthancException(ErrorCode_NotImplemented);
221
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182 }
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183 }
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184
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185 FileInfo StorageAccessor::Write(const std::string &data,
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186 FileContentType type,
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187 CompressionType compression,
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188 bool storeMd5)
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189 {
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190 return Write((data.size() == 0 ? NULL : data.c_str()),
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191 data.size(), type, compression, storeMd5);
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192 }
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193
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194
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195 void StorageAccessor::Read(std::string& content,
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196 const FileInfo& info)
221
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197 {
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198 if (cache_ == NULL ||
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199 !cache_->Fetch(content, info.GetUuid(), info.GetContentType()))
221
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diff changeset
200 {
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diff changeset
201 switch (info.GetCompressionType())
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202 {
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diff changeset
203 case CompressionType_None:
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204 {
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205 std::unique_ptr<IMemoryBuffer> buffer;
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206
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diff changeset
207 {
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diff changeset
208 MetricsTimer timer(*this, METRICS_READ_DURATION);
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diff changeset
209 buffer.reset(area_.Read(info.GetUuid(), info.GetContentType()));
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210 }
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211
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diff changeset
212 if (metrics_ != NULL)
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diff changeset
213 {
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diff changeset
214 metrics_->IncrementIntegerValue(METRICS_READ_BYTES, buffer->GetSize());
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215 }
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216
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diff changeset
217 buffer->MoveToString(content);
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218
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diff changeset
219 break;
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220 }
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221
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diff changeset
222 case CompressionType_ZlibWithSize:
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223 {
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diff changeset
224 ZlibCompressor zlib;
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diff changeset
225
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diff changeset
226 std::unique_ptr<IMemoryBuffer> compressed;
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227
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diff changeset
228 {
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diff changeset
229 MetricsTimer timer(*this, METRICS_READ_DURATION);
4900
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diff changeset
230 compressed.reset(area_.Read(info.GetUuid(), info.GetContentType()));
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diff changeset
231 }
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diff changeset
232
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diff changeset
233 if (metrics_ != NULL)
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diff changeset
234 {
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diff changeset
235 metrics_->IncrementIntegerValue(METRICS_READ_BYTES, compressed->GetSize());
5329
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diff changeset
236 }
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diff changeset
237
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diff changeset
238 zlib.Uncompress(content, compressed->GetData(), compressed->GetSize());
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diff changeset
239
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diff changeset
240 break;
3175
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diff changeset
241 }
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diff changeset
242
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diff changeset
243 default:
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diff changeset
244 {
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diff changeset
245 throw OrthancException(ErrorCode_NotImplemented);
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diff changeset
246 }
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diff changeset
247 }
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diff changeset
248
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diff changeset
249 // always store the uncompressed data in cache
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diff changeset
250 if (cache_ != NULL)
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diff changeset
251 {
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252 cache_->Add(info.GetUuid(), info.GetContentType(), content);
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253 }
221
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254 }
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255
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256 // TODO Check the validity of the uncompressed MD5?
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257 }
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258
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259
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260 void StorageAccessor::ReadRaw(std::string& content,
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261 const FileInfo& info)
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262 {
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263 if (cache_ == NULL || !cache_->Fetch(content, info.GetUuid(), info.GetContentType()))
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264 {
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265 std::unique_ptr<IMemoryBuffer> buffer;
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266
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267 {
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268 MetricsTimer timer(*this, METRICS_READ_DURATION);
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269 buffer.reset(area_.Read(info.GetUuid(), info.GetContentType()));
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270 }
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271
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272 if (metrics_ != NULL)
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273 {
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274 metrics_->IncrementIntegerValue(METRICS_READ_BYTES, buffer->GetSize());
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275 }
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276
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277 buffer->MoveToString(content);
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278 }
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279 }
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280
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281
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282 void StorageAccessor::Remove(const std::string& fileUuid,
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283 FileContentType type)
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284 {
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285 if (cache_ != NULL)
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286 {
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287 cache_->Invalidate(fileUuid, type);
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288 }
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289
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290 {
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291 MetricsTimer timer(*this, METRICS_REMOVE_DURATION);
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292 area_.Remove(fileUuid, type);
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293 }
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294 }
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295
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296
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297 void StorageAccessor::Remove(const FileInfo &info)
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298 {
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299 Remove(info.GetUuid(), info.GetContentType());
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300 }
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301
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302
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303 void StorageAccessor::ReadStartRange(std::string& target,
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304 const std::string& fileUuid,
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305 FileContentType contentType,
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306 uint64_t end /* exclusive */)
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307 {
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308 if (cache_ == NULL || !cache_->FetchStartRange(target, fileUuid, contentType, end))
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309 {
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310 std::unique_ptr<IMemoryBuffer> buffer;
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311
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312 {
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313 MetricsTimer timer(*this, METRICS_READ_DURATION);
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314 buffer.reset(area_.ReadRange(fileUuid, contentType, 0, end));
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315 assert(buffer->GetSize() == end);
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316 }
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317
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318 if (metrics_ != NULL)
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319 {
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320 metrics_->IncrementIntegerValue(METRICS_READ_BYTES, buffer->GetSize());
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321 }
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322
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323 buffer->MoveToString(target);
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324
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325 if (cache_ != NULL)
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326 {
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327 cache_->AddStartRange(fileUuid, contentType, target);
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328 }
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329 }
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330 }
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331
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332
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333 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
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334 void StorageAccessor::SetupSender(BufferHttpSender& sender,
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335 const FileInfo& info,
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336 const std::string& mime)
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337 {
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diff changeset
338 Read(sender.GetBuffer(), info);
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339
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340 sender.SetContentType(mime);
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341
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342 const char* extension;
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343 switch (info.GetContentType())
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344 {
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345 case FileContentType_Dicom:
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346 case FileContentType_DicomUntilPixelData:
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347 extension = ".dcm";
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348 break;
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349
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350 case FileContentType_DicomAsJson:
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351 extension = ".json";
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352 break;
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353
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354 default:
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355 // Non-standard content type
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356 extension = "";
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357 }
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358
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359 sender.SetContentFilename(info.GetUuid() + std::string(extension));
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360 }
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361 #endif
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362
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diff changeset
363
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364 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
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365 void StorageAccessor::AnswerFile(HttpOutput& output,
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366 const FileInfo& info,
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367 MimeType mime)
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368 {
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369 AnswerFile(output, info, EnumerationToString(mime));
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370 }
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371 #endif
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372
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373
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374 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
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375 void StorageAccessor::AnswerFile(HttpOutput& output,
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376 const FileInfo& info,
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377 const std::string& mime)
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378 {
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379 BufferHttpSender sender;
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380 SetupSender(sender, info, mime);
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381
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382 HttpStreamTranscoder transcoder(sender, CompressionType_None); // since 1.11.2, the storage accessor only returns uncompressed buffers
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383 output.Answer(transcoder);
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384 }
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385 #endif
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386
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387
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388 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
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389 void StorageAccessor::AnswerFile(RestApiOutput& output,
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390 const FileInfo& info,
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391 MimeType mime)
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392 {
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393 AnswerFile(output, info, EnumerationToString(mime));
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394 }
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395 #endif
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396
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397
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398 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
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399 void StorageAccessor::AnswerFile(RestApiOutput& output,
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400 const FileInfo& info,
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401 const std::string& mime)
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402 {
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403 BufferHttpSender sender;
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404 SetupSender(sender, info, mime);
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405
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406 HttpStreamTranscoder transcoder(sender, CompressionType_None); // since 1.11.2, the storage accessor only returns uncompressed buffers
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407 output.AnswerStream(transcoder);
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408 }
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409 #endif
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410 }