Mercurial > hg > orthanc
annotate OrthancServer/ServerContext.cpp @ 1509:0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 10 Aug 2015 10:01:59 +0200 |
parents | f967bdf8534e |
children | d73a2178b319 |
rev | line source |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
224 | 5 * |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
10 * | |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
22 * | |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
32 | |
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33 #include "PrecompiledHeadersServer.h" |
224 | 34 #include "ServerContext.h" |
35 | |
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36 #include "../Core/HttpServer/FilesystemHttpSender.h" |
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37 #include "../Core/Logging.h" |
795 | 38 #include "FromDcmtkBridge.h" |
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39 #include "ServerToolbox.h" |
771 | 40 #include "OrthancInitialization.h" |
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41 |
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42 #include <EmbeddedResources.h> |
794 | 43 #include <dcmtk/dcmdata/dcfilefo.h> |
224 | 44 |
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45 |
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46 #include "Scheduler/CallSystemCommand.h" |
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47 #include "Scheduler/DeleteInstanceCommand.h" |
1008 | 48 #include "Scheduler/ModifyInstanceCommand.h" |
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49 #include "Scheduler/StoreScuCommand.h" |
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50 #include "Scheduler/StorePeerCommand.h" |
1010 | 51 #include "OrthancRestApi/OrthancRestApi.h" |
1133 | 52 #include "../Plugins/Engine/OrthancPlugins.h" |
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53 |
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54 |
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55 #define ENABLE_DICOM_CACHE 1 |
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56 |
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57 static const size_t DICOM_CACHE_SIZE = 2; |
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58 |
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59 /** |
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60 * IMPORTANT: We make the assumption that the same instance of |
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61 * FileStorage can be accessed from multiple threads. This seems OK |
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62 * since the filesystem implements the required locking mechanisms, |
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63 * but maybe a read-writer lock on the "FileStorage" could be |
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64 * useful. Conversely, "ServerIndex" already implements mutex-based |
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65 * locking. |
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66 **/ |
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67 |
224 | 68 namespace Orthanc |
69 { | |
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70 void ServerContext::ChangeThread(ServerContext* that) |
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71 { |
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72 while (!that->done_) |
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73 { |
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74 std::auto_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(100)); |
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75 |
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76 if (obj.get() != NULL) |
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77 { |
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78 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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79 |
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80 boost::recursive_mutex::scoped_lock lock(that->listenersMutex_); |
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81 for (ServerListeners::iterator it = that->listeners_.begin(); |
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82 it != that->listeners_.end(); ++it) |
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83 { |
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84 try |
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85 { |
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86 it->GetListener().SignalChange(change); |
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87 } |
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88 catch (OrthancException& e) |
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89 { |
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90 LOG(ERROR) << "Error in the " << it->GetDescription() |
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91 << " callback while signaling a change: " << e.What(); |
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92 } |
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93 } |
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94 } |
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95 } |
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96 } |
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97 |
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98 |
1247 | 99 ServerContext::ServerContext(IDatabaseWrapper& database) : |
100 index_(*this, database), | |
656 | 101 compressionEnabled_(false), |
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102 provider_(*this), |
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103 dicomCache_(provider_, DICOM_CACHE_SIZE), |
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104 scheduler_(Configuration::GetGlobalIntegerParameter("LimitJobs", 10)), |
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105 lua_(*this), |
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106 plugins_(NULL), |
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107 done_(false), |
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108 queryRetrieveArchive_(Configuration::GetGlobalIntegerParameter("QueryRetrieveSize", 10)), |
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109 defaultLocalAet_(Configuration::GetGlobalStringParameter("DicomAet", "ORTHANC")) |
224 | 110 { |
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111 uint64_t s = Configuration::GetGlobalIntegerParameter("DicomAssociationCloseDelay", 5); // In seconds |
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112 scu_.SetMillisecondsBeforeClose(s * 1000); // Milliseconds are expected here |
774 | 113 |
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114 listeners_.push_back(ServerListener(lua_, "Lua")); |
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115 |
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116 changeThread_ = boost::thread(ChangeThread, this); |
224 | 117 } |
118 | |
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119 |
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120 |
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121 ServerContext::~ServerContext() |
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122 { |
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123 if (!done_) |
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124 { |
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125 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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126 Stop(); |
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127 } |
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128 } |
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129 |
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130 |
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131 void ServerContext::Stop() |
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132 { |
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133 if (!done_) |
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134 { |
1459 | 135 { |
136 boost::recursive_mutex::scoped_lock lock(listenersMutex_); | |
137 listeners_.clear(); | |
138 } | |
139 | |
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140 done_ = true; |
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141 |
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142 if (changeThread_.joinable()) |
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143 { |
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144 changeThread_.join(); |
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145 } |
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146 |
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147 scu_.Finalize(); |
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148 |
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149 // Do not change the order below! |
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150 scheduler_.Stop(); |
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151 index_.Stop(); |
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152 } |
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153 } |
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154 |
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155 |
236 | 156 void ServerContext::SetCompressionEnabled(bool enabled) |
157 { | |
158 if (enabled) | |
159 LOG(WARNING) << "Disk compression is enabled"; | |
160 else | |
161 LOG(WARNING) << "Disk compression is disabled"; | |
162 | |
163 compressionEnabled_ = enabled; | |
164 } | |
165 | |
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166 void ServerContext::RemoveFile(const std::string& fileUuid, |
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167 FileContentType type) |
227
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168 { |
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169 accessor_.Remove(fileUuid, type); |
227
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170 } |
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171 |
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172 |
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173 StoreStatus ServerContext::Store(std::string& resultPublicId, |
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174 DicomInstanceToStore& dicom) |
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175 { |
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176 try |
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177 { |
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178 DicomInstanceHasher hasher(dicom.GetSummary()); |
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179 resultPublicId = hasher.HashInstance(); |
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180 |
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181 Json::Value simplified; |
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182 SimplifyTags(simplified, dicom.GetJson()); |
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183 |
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184 // Test if the instance must be filtered out |
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185 bool accepted = true; |
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186 |
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187 { |
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188 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
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189 |
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190 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
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191 { |
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192 try |
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193 { |
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194 if (!it->GetListener().FilterIncomingInstance(simplified, dicom.GetRemoteAet())) |
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195 { |
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196 accepted = false; |
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197 break; |
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198 } |
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199 } |
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200 catch (OrthancException& e) |
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201 { |
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202 LOG(ERROR) << "Error in the " << it->GetDescription() |
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203 << " callback while receiving an instance: " << e.What(); |
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204 throw; |
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205 } |
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206 } |
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207 } |
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208 |
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209 if (!accepted) |
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210 { |
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211 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
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212 return StoreStatus_FilteredOut; |
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213 } |
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214 |
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215 if (compressionEnabled_) |
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216 { |
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217 accessor_.SetCompressionForNextOperations(CompressionType_Zlib); |
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218 } |
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219 else |
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220 { |
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221 accessor_.SetCompressionForNextOperations(CompressionType_None); |
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222 } |
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223 |
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224 FileInfo dicomInfo = accessor_.Write(dicom.GetBufferData(), dicom.GetBufferSize(), FileContentType_Dicom); |
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225 FileInfo jsonInfo = accessor_.Write(dicom.GetJson().toStyledString(), FileContentType_DicomAsJson); |
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226 |
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227 ServerIndex::Attachments attachments; |
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228 attachments.push_back(dicomInfo); |
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229 attachments.push_back(jsonInfo); |
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230 |
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231 typedef std::map<MetadataType, std::string> InstanceMetadata; |
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232 InstanceMetadata instanceMetadata; |
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233 StoreStatus status = index_.Store(instanceMetadata, dicom.GetSummary(), attachments, |
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234 dicom.GetRemoteAet(), dicom.GetMetadata()); |
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235 |
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236 // Only keep the metadata for the "instance" level |
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237 dicom.GetMetadata().clear(); |
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238 |
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239 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
1304 | 240 it != instanceMetadata.end(); ++it) |
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241 { |
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242 dicom.GetMetadata().insert(std::make_pair(std::make_pair(ResourceType_Instance, it->first), |
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243 it->second)); |
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244 } |
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245 |
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246 if (status != StoreStatus_Success) |
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247 { |
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248 accessor_.Remove(dicomInfo.GetUuid(), FileContentType_Dicom); |
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249 accessor_.Remove(jsonInfo.GetUuid(), FileContentType_DicomAsJson); |
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250 } |
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251 |
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252 switch (status) |
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253 { |
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254 case StoreStatus_Success: |
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255 LOG(INFO) << "New instance stored"; |
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256 break; |
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257 |
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258 case StoreStatus_AlreadyStored: |
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259 LOG(INFO) << "Already stored"; |
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260 break; |
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261 |
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262 case StoreStatus_Failure: |
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263 LOG(ERROR) << "Store failure"; |
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264 break; |
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265 |
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266 default: |
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267 // This should never happen |
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268 break; |
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269 } |
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270 |
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271 if (status == StoreStatus_Success || |
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272 status == StoreStatus_AlreadyStored) |
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273 { |
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274 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
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275 |
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276 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
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277 { |
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278 try |
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279 { |
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280 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplified); |
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281 } |
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282 catch (OrthancException& e) |
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283 { |
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284 LOG(ERROR) << "Error in the " << it->GetDescription() |
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285 << " callback while receiving an instance: " << e.What(); |
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286 } |
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287 } |
1004
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288 } |
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289 |
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290 return status; |
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291 } |
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292 catch (OrthancException& e) |
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293 { |
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294 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
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295 { |
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296 LogMissingRequiredTag(dicom.GetSummary()); |
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297 } |
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298 |
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299 throw; |
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300 } |
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301 } |
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302 |
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303 |
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304 |
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305 void ServerContext::AnswerAttachment(RestApiOutput& output, |
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306 const std::string& instancePublicId, |
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307 FileContentType content) |
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308 { |
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309 FileInfo attachment; |
236 | 310 if (!index_.LookupAttachment(attachment, instancePublicId, content)) |
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311 { |
236 | 312 throw OrthancException(ErrorCode_InternalError); |
313 } | |
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314 |
236 | 315 accessor_.SetCompressionForNextOperations(attachment.GetCompressionType()); |
320 | 316 |
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317 std::auto_ptr<HttpFileSender> sender(accessor_.ConstructHttpFileSender(attachment.GetUuid(), attachment.GetContentType())); |
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318 sender->SetContentType(GetMimeType(content)); |
320 | 319 sender->SetDownloadFilename(instancePublicId + ".dcm"); |
236 | 320 output.AnswerFile(*sender); |
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321 } |
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322 |
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323 |
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324 void ServerContext::ReadJson(Json::Value& result, |
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325 const std::string& instancePublicId) |
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326 { |
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327 std::string s; |
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328 ReadFile(s, instancePublicId, FileContentType_DicomAsJson); |
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329 |
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330 Json::Reader reader; |
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331 if (!reader.parse(s, result)) |
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332 { |
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333 throw OrthancException("Corrupted JSON file"); |
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334 } |
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335 } |
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336 |
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337 |
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338 void ServerContext::ReadFile(std::string& result, |
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339 const std::string& instancePublicId, |
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340 FileContentType content, |
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341 bool uncompressIfNeeded) |
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342 { |
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343 FileInfo attachment; |
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344 if (!index_.LookupAttachment(attachment, instancePublicId, content)) |
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345 { |
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346 throw OrthancException(ErrorCode_InternalError); |
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347 } |
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348 |
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349 if (uncompressIfNeeded) |
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350 { |
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351 accessor_.SetCompressionForNextOperations(attachment.GetCompressionType()); |
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352 } |
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353 else |
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354 { |
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355 accessor_.SetCompressionForNextOperations(CompressionType_None); |
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356 } |
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357 |
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358 accessor_.Read(result, attachment.GetUuid(), attachment.GetContentType()); |
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359 } |
285
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360 |
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361 |
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362 IDynamicObject* ServerContext::DicomCacheProvider::Provide(const std::string& instancePublicId) |
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363 { |
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364 std::string content; |
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365 context_.ReadFile(content, instancePublicId, FileContentType_Dicom); |
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366 return new ParsedDicomFile(content); |
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367 } |
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368 |
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369 |
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370 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& that, |
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371 const std::string& instancePublicId) : |
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372 that_(that), |
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373 lock_(that_.dicomCacheMutex_) |
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374 { |
291
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375 #if ENABLE_DICOM_CACHE == 0 |
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376 static std::auto_ptr<IDynamicObject> p; |
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377 p.reset(provider_.Provide(instancePublicId)); |
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378 dicom_ = dynamic_cast<ParsedDicomFile*>(p.get()); |
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379 #else |
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380 dicom_ = &dynamic_cast<ParsedDicomFile&>(that_.dicomCache_.Access(instancePublicId)); |
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381 #endif |
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382 } |
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383 |
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384 |
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385 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
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386 { |
285
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387 } |
304 | 388 |
389 | |
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390 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
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391 { |
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392 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
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393 accessor_.SetStoreMD5(storeMD5); |
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394 } |
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395 |
699
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396 |
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397 bool ServerContext::AddAttachment(const std::string& resourceId, |
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398 FileContentType attachmentType, |
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399 const void* data, |
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400 size_t size) |
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401 { |
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402 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
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403 |
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404 if (compressionEnabled_) |
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405 { |
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406 accessor_.SetCompressionForNextOperations(CompressionType_Zlib); |
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407 } |
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408 else |
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409 { |
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410 accessor_.SetCompressionForNextOperations(CompressionType_None); |
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411 } |
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412 |
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413 FileInfo info = accessor_.Write(data, size, attachmentType); |
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414 StoreStatus status = index_.AddAttachment(info, resourceId); |
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415 |
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416 if (status != StoreStatus_Success) |
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417 { |
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418 accessor_.Remove(info.GetUuid(), info.GetContentType()); |
699
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419 return false; |
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420 } |
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421 else |
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422 { |
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423 return true; |
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424 } |
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425 } |
1145
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426 |
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427 |
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428 bool ServerContext::DeleteResource(Json::Value& target, |
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429 const std::string& uuid, |
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430 ResourceType expectedType) |
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431 { |
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432 return index_.DeleteResource(target, uuid, expectedType); |
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433 } |
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NewChildInstance change type
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434 |
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435 |
1198 | 436 void ServerContext::SignalChange(const ServerIndexChange& change) |
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437 { |
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438 pendingChanges_.Enqueue(change.Clone()); |
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439 } |
1232
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440 |
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441 |
1434
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442 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
1232
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443 { |
1459 | 444 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
445 | |
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446 plugins_ = &plugins; |
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447 |
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448 // TODO REFACTOR THIS |
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449 listeners_.clear(); |
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450 listeners_.push_back(ServerListener(lua_, "Lua")); |
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451 listeners_.push_back(ServerListener(plugins, "plugin")); |
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452 } |
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453 |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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454 |
1434
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455 void ServerContext::ResetPlugins() |
1232
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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456 { |
1459 | 457 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
458 | |
1434
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459 plugins_ = NULL; |
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460 |
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461 // TODO REFACTOR THIS |
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462 listeners_.clear(); |
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463 listeners_.push_back(ServerListener(lua_, "Lua")); |
1232
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464 } |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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465 |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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diff
changeset
|
466 |
1434
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467 bool ServerContext::HasPlugins() const |
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468 { |
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469 return (plugins_ != NULL); |
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470 } |
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471 |
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472 |
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473 const OrthancPlugins& ServerContext::GetPlugins() const |
1232
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474 { |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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475 if (HasPlugins()) |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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476 { |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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477 return *plugins_; |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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478 } |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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479 else |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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480 { |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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481 throw OrthancException(ErrorCode_InternalError); |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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482 } |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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483 } |
224 | 484 } |