Mercurial > hg > orthanc
annotate OrthancServer/OrthancFindRequestHandler.cpp @ 3795:0462b08d9faa
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 30 Mar 2020 21:06:46 +0200 |
parents | 2a170a8f1faf |
children | 884b55ce01f6 |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 #include "PrecompiledHeadersServer.h" |
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35 #include "OrthancFindRequestHandler.h" |
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36 |
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37 #include "../Core/DicomFormat/DicomArray.h" |
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38 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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39 #include "../Core/Logging.h" |
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40 #include "../Core/Lua/LuaFunctionCall.h" |
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41 #include "../Core/MetricsRegistry.h" |
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42 #include "OrthancConfiguration.h" |
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43 #include "Search/DatabaseLookup.h" |
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44 #include "ServerContext.h" |
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45 #include "ServerToolbox.h" |
608 | 46 |
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47 #include <boost/regex.hpp> |
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48 |
608 | 49 |
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50 namespace Orthanc |
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51 { |
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52 static void GetChildren(std::list<std::string>& target, |
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53 ServerIndex& index, |
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54 const std::list<std::string>& source) |
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55 { |
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56 target.clear(); |
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57 |
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58 for (std::list<std::string>::const_iterator |
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59 it = source.begin(); it != source.end(); ++it) |
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60 { |
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61 std::list<std::string> tmp; |
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62 index.GetChildren(tmp, *it); |
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63 target.splice(target.end(), tmp); |
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64 } |
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65 } |
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66 |
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67 |
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68 static void StoreSetOfStrings(DicomMap& result, |
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69 const DicomTag& tag, |
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70 const std::set<std::string>& values) |
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71 { |
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72 bool isFirst = true; |
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73 |
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74 std::string s; |
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75 for (std::set<std::string>::const_iterator |
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76 it = values.begin(); it != values.end(); ++it) |
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77 { |
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78 if (isFirst) |
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79 { |
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80 isFirst = false; |
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81 } |
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82 else |
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83 { |
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84 s += "\\"; |
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85 } |
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86 |
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87 s += *it; |
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88 } |
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89 |
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90 result.SetValue(tag, s, false); |
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91 } |
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94 static void ComputePatientCounters(DicomMap& result, |
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95 ServerIndex& index, |
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96 const std::string& patient, |
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97 const DicomMap& query) |
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98 { |
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99 std::list<std::string> studies; |
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100 index.GetChildren(studies, patient); |
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101 |
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102 if (query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES)) |
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103 { |
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104 result.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES, |
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105 boost::lexical_cast<std::string>(studies.size()), false); |
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106 } |
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107 |
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108 if (!query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) && |
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109 !query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES)) |
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110 { |
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111 return; |
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112 } |
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113 |
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114 std::list<std::string> series; |
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115 GetChildren(series, index, studies); |
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116 studies.clear(); // This information is useless below |
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117 |
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118 if (query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES)) |
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119 { |
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120 result.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES, |
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121 boost::lexical_cast<std::string>(series.size()), false); |
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122 } |
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123 |
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124 if (!query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES)) |
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125 { |
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126 return; |
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127 } |
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128 |
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129 std::list<std::string> instances; |
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130 GetChildren(instances, index, series); |
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131 |
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132 if (query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES)) |
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133 { |
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134 result.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES, |
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135 boost::lexical_cast<std::string>(instances.size()), false); |
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136 } |
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137 } |
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138 |
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139 |
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140 static void ComputeStudyCounters(DicomMap& result, |
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141 ServerContext& context, |
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142 const std::string& study, |
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143 const DicomMap& query) |
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144 { |
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145 ServerIndex& index = context.GetIndex(); |
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146 |
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147 std::list<std::string> series; |
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148 index.GetChildren(series, study); |
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149 |
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150 if (query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES)) |
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151 { |
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152 result.SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES, |
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153 boost::lexical_cast<std::string>(series.size()), false); |
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154 } |
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155 |
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156 if (query.HasTag(DICOM_TAG_MODALITIES_IN_STUDY)) |
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157 { |
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158 std::set<std::string> values; |
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159 |
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160 for (std::list<std::string>::const_iterator |
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161 it = series.begin(); it != series.end(); ++it) |
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162 { |
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163 DicomMap tags; |
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164 if (index.GetMainDicomTags(tags, *it, ResourceType_Series, ResourceType_Series)) |
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165 { |
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166 const DicomValue* value = tags.TestAndGetValue(DICOM_TAG_MODALITY); |
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167 |
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168 if (value != NULL && |
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169 !value->IsNull() && |
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170 !value->IsBinary()) |
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171 { |
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172 values.insert(value->GetContent()); |
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173 } |
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174 } |
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175 } |
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176 |
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177 StoreSetOfStrings(result, DICOM_TAG_MODALITIES_IN_STUDY, values); |
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178 } |
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179 |
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180 if (!query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) && |
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181 !query.HasTag(DICOM_TAG_SOP_CLASSES_IN_STUDY)) |
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182 { |
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183 return; |
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184 } |
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185 |
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186 std::list<std::string> instances; |
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187 GetChildren(instances, index, series); |
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188 |
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189 if (query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES)) |
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190 { |
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191 result.SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES, |
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192 boost::lexical_cast<std::string>(instances.size()), false); |
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193 } |
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194 |
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195 if (query.HasTag(DICOM_TAG_SOP_CLASSES_IN_STUDY)) |
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196 { |
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197 std::set<std::string> values; |
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198 |
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199 for (std::list<std::string>::const_iterator |
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200 it = instances.begin(); it != instances.end(); ++it) |
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201 { |
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202 std::string value; |
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203 if (context.LookupOrReconstructMetadata(value, *it, MetadataType_Instance_SopClassUid)) |
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204 { |
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205 values.insert(value); |
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206 } |
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207 } |
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208 |
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209 StoreSetOfStrings(result, DICOM_TAG_SOP_CLASSES_IN_STUDY, values); |
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210 } |
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211 } |
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212 |
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213 |
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214 static void ComputeSeriesCounters(DicomMap& result, |
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215 ServerIndex& index, |
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216 const std::string& series, |
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217 const DicomMap& query) |
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218 { |
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219 std::list<std::string> instances; |
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220 index.GetChildren(instances, series); |
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221 |
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222 if (query.HasTag(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES)) |
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223 { |
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224 result.SetValue(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES, |
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225 boost::lexical_cast<std::string>(instances.size()), false); |
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226 } |
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227 } |
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228 |
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229 |
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230 static DicomMap* ComputeCounters(ServerContext& context, |
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231 const std::string& instanceId, |
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232 ResourceType level, |
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233 const DicomMap& query) |
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234 { |
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235 switch (level) |
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236 { |
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237 case ResourceType_Patient: |
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238 if (!query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES) && |
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239 !query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) && |
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240 !query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES)) |
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241 { |
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242 return NULL; |
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243 } |
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244 |
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245 break; |
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246 |
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247 case ResourceType_Study: |
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248 if (!query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES) && |
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249 !query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) && |
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250 !query.HasTag(DICOM_TAG_SOP_CLASSES_IN_STUDY) && |
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251 !query.HasTag(DICOM_TAG_MODALITIES_IN_STUDY)) |
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252 { |
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253 return NULL; |
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254 } |
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255 |
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256 break; |
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257 |
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258 case ResourceType_Series: |
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259 if (!query.HasTag(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES)) |
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260 { |
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261 return NULL; |
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262 } |
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263 |
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264 break; |
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265 |
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266 default: |
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267 return NULL; |
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268 } |
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269 |
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270 std::string parent; |
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271 if (!context.GetIndex().LookupParent(parent, instanceId, level)) |
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272 { |
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273 throw OrthancException(ErrorCode_UnknownResource); // The resource was deleted in between |
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274 } |
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275 |
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276 std::unique_ptr<DicomMap> result(new DicomMap); |
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277 |
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278 switch (level) |
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279 { |
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280 case ResourceType_Patient: |
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281 ComputePatientCounters(*result, context.GetIndex(), parent, query); |
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282 break; |
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283 |
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284 case ResourceType_Study: |
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285 ComputeStudyCounters(*result, context, parent, query); |
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286 break; |
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287 |
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288 case ResourceType_Series: |
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289 ComputeSeriesCounters(*result, context.GetIndex(), parent, query); |
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290 break; |
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291 |
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292 default: |
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293 throw OrthancException(ErrorCode_InternalError); |
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294 } |
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295 |
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296 return result.release(); |
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297 } |
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298 |
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299 |
608 | 300 static void AddAnswer(DicomFindAnswers& answers, |
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301 const DicomMap& mainDicomTags, |
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302 const Json::Value* dicomAsJson, |
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303 const DicomArray& query, |
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304 const std::list<DicomTag>& sequencesToReturn, |
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305 const DicomMap* counters) |
608 | 306 { |
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307 DicomMap match; |
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308 |
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309 if (dicomAsJson != NULL) |
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310 { |
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311 match.FromDicomAsJson(*dicomAsJson); |
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312 } |
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313 else |
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314 { |
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315 match.Assign(mainDicomTags); |
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316 } |
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317 |
608 | 318 DicomMap result; |
319 | |
320 for (size_t i = 0; i < query.GetSize(); i++) | |
321 { | |
1346 | 322 if (query.GetElement(i).GetTag() == DICOM_TAG_QUERY_RETRIEVE_LEVEL) |
323 { | |
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324 // Fix issue 30 on Google Code (QR response missing "Query/Retrieve Level" (008,0052)) |
1346 | 325 result.SetValue(query.GetElement(i).GetTag(), query.GetElement(i).GetValue()); |
326 } | |
327 else if (query.GetElement(i).GetTag() == DICOM_TAG_SPECIFIC_CHARACTER_SET) | |
328 { | |
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329 // Do not include the encoding, this is handled by class ParsedDicomFile |
1346 | 330 } |
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331 else |
608 | 332 { |
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333 const DicomTag& tag = query.GetElement(i).GetTag(); |
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334 const DicomValue* value = match.TestAndGetValue(tag); |
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335 |
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336 if (value != NULL && |
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337 !value->IsNull() && |
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338 !value->IsBinary()) |
608 | 339 { |
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340 result.SetValue(tag, value->GetContent(), false); |
608 | 341 } |
722 | 342 else |
343 { | |
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On C-FIND, avoid accessing the storage area whenever possible
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344 result.SetValue(tag, "", false); |
722 | 345 } |
608 | 346 } |
347 } | |
348 | |
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349 if (counters != NULL) |
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Support of optional tags for counting resources in C-Find
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350 { |
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Support of optional tags for counting resources in C-Find
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|
351 DicomArray tmp(*counters); |
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Support of optional tags for counting resources in C-Find
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352 for (size_t i = 0; i < tmp.GetSize(); i++) |
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Support of optional tags for counting resources in C-Find
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|
353 { |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
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|
354 result.SetValue(tmp.GetElement(i).GetTag(), tmp.GetElement(i).GetValue().GetContent(), false); |
1898
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Support of optional tags for counting resources in C-Find
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355 } |
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Support of optional tags for counting resources in C-Find
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356 } |
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357 |
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358 if (result.GetSize() == 0 && |
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changeset
|
359 sequencesToReturn.empty()) |
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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diff
changeset
|
360 { |
1361
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refactoring of C-Find SCP
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361 LOG(WARNING) << "The C-FIND request does not return any DICOM tag"; |
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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362 } |
3015
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On C-FIND, avoid accessing the storage area whenever possible
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363 else if (sequencesToReturn.empty()) |
1859
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|
364 { |
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C-FIND SCP will return tags with sequence value representation
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365 answers.Add(result); |
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C-FIND SCP will return tags with sequence value representation
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366 } |
3015
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On C-FIND, avoid accessing the storage area whenever possible
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367 else if (dicomAsJson == NULL) |
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On C-FIND, avoid accessing the storage area whenever possible
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368 { |
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On C-FIND, avoid accessing the storage area whenever possible
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369 LOG(WARNING) << "C-FIND query requesting a sequence, but reading JSON from disk is disabled"; |
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370 answers.Add(result); |
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On C-FIND, avoid accessing the storage area whenever possible
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changeset
|
371 } |
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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372 else |
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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changeset
|
373 { |
3342
63f59ad9381a
Fix issue #136 (C-Find request fails when found DICOM file does not have certain tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
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changeset
|
374 ParsedDicomFile dicom(result, GetDefaultDicomEncoding(), true /* be permissive, cf. issue #136 */); |
1859
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C-FIND SCP will return tags with sequence value representation
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375 |
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C-FIND SCP will return tags with sequence value representation
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376 for (std::list<DicomTag>::const_iterator tag = sequencesToReturn.begin(); |
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|
377 tag != sequencesToReturn.end(); ++tag) |
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C-FIND SCP will return tags with sequence value representation
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changeset
|
378 { |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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parents:
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diff
changeset
|
379 assert(dicomAsJson != NULL); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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changeset
|
380 const Json::Value& source = (*dicomAsJson) [tag->Format()]; |
1859
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381 |
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382 if (source.type() == Json::objectValue && |
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C-FIND SCP will return tags with sequence value representation
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|
383 source.isMember("Type") && |
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C-FIND SCP will return tags with sequence value representation
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changeset
|
384 source.isMember("Value") && |
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C-FIND SCP will return tags with sequence value representation
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|
385 source["Type"].asString() == "Sequence" && |
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C-FIND SCP will return tags with sequence value representation
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|
386 source["Value"].type() == Json::arrayValue) |
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C-FIND SCP will return tags with sequence value representation
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|
387 { |
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C-FIND SCP will return tags with sequence value representation
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388 Json::Value content = Json::arrayValue; |
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C-FIND SCP will return tags with sequence value representation
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|
389 |
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C-FIND SCP will return tags with sequence value representation
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|
390 for (Json::Value::ArrayIndex i = 0; i < source["Value"].size(); i++) |
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C-FIND SCP will return tags with sequence value representation
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diff
changeset
|
391 { |
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C-FIND SCP will return tags with sequence value representation
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diff
changeset
|
392 Json::Value item; |
2120 | 393 ServerToolbox::SimplifyTags(item, source["Value"][i], DicomToJsonFormat_Short); |
1859
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C-FIND SCP will return tags with sequence value representation
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|
394 content.append(item); |
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C-FIND SCP will return tags with sequence value representation
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|
395 } |
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C-FIND SCP will return tags with sequence value representation
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diff
changeset
|
396 |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
397 dicom.Replace(*tag, content, false, DicomReplaceMode_InsertIfAbsent, |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
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parents:
3640
diff
changeset
|
398 "" /* no private creator */); |
1859
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C-FIND SCP will return tags with sequence value representation
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diff
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|
399 } |
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C-FIND SCP will return tags with sequence value representation
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changeset
|
400 } |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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diff
changeset
|
401 |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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diff
changeset
|
402 answers.Add(dicom); |
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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parents:
1288
diff
changeset
|
403 } |
608 | 404 } |
405 | |
406 | |
1851
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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parents:
1800
diff
changeset
|
407 |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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1800
diff
changeset
|
408 bool OrthancFindRequestHandler::FilterQueryTag(std::string& value /* can be modified */, |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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diff
changeset
|
409 ResourceType level, |
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OrthancFindRequestHandler::FilterQueryTag
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diff
changeset
|
410 const DicomTag& tag, |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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diff
changeset
|
411 ModalityManufacturer manufacturer) |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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parents:
1800
diff
changeset
|
412 { |
2335 | 413 // Whatever the manufacturer, remove the GenericGroupLength tags |
414 // http://dicom.nema.org/medical/dicom/current/output/chtml/part05/sect_7.2.html | |
415 // https://bitbucket.org/sjodogne/orthanc/issues/31/ | |
2434
63194107e61b
fix issue 31 for good: removing group length correctly
amazy
parents:
2382
diff
changeset
|
416 if (tag.GetElement() == 0x0000) |
2317
5b7556568fa4
Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents:
2256
diff
changeset
|
417 { |
5b7556568fa4
Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents:
2256
diff
changeset
|
418 return false; |
5b7556568fa4
Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents:
2256
diff
changeset
|
419 } |
5b7556568fa4
Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents:
2256
diff
changeset
|
420 |
1853
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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1851
diff
changeset
|
421 switch (manufacturer) |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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diff
changeset
|
422 { |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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changeset
|
423 case ModalityManufacturer_Vitrea: |
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two patches for manufacturers Efilm and Vitrea
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changeset
|
424 // Following Denis Nesterov's mail on 2015-11-30 |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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diff
changeset
|
425 if (tag == DicomTag(0x5653, 0x0010)) // "PrivateCreator = Vital Images SW 3.4" |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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diff
changeset
|
426 { |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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diff
changeset
|
427 return false; |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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parents:
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diff
changeset
|
428 } |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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parents:
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diff
changeset
|
429 |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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parents:
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diff
changeset
|
430 break; |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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parents:
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diff
changeset
|
431 |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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parents:
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diff
changeset
|
432 default: |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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parents:
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diff
changeset
|
433 break; |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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parents:
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diff
changeset
|
434 } |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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parents:
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diff
changeset
|
435 |
1851
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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diff
changeset
|
436 return true; |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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diff
changeset
|
437 } |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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parents:
1800
diff
changeset
|
438 |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
439 |
1888
512b6e76f531
Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1859
diff
changeset
|
440 bool OrthancFindRequestHandler::ApplyLuaFilter(DicomMap& target, |
512b6e76f531
Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
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diff
changeset
|
441 const DicomMap& source, |
512b6e76f531
Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
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diff
changeset
|
442 const std::string& remoteIp, |
512b6e76f531
Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
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diff
changeset
|
443 const std::string& remoteAet, |
2827
d4fd4614f275
IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2617
diff
changeset
|
444 const std::string& calledAet, |
d4fd4614f275
IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
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2617
diff
changeset
|
445 ModalityManufacturer manufacturer) |
1888
512b6e76f531
Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
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diff
changeset
|
446 { |
2221
e7beca979562
fix Windows build due to overwriting a macro
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2218
diff
changeset
|
447 static const char* LUA_CALLBACK = "IncomingFindRequestFilter"; |
2616
2f3007bf0708
event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2612
diff
changeset
|
448 |
2617
912a767911b0
back to a single Lua context
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diff
changeset
|
449 LuaScripting::Lock lock(context_.GetLuaScripting()); |
912a767911b0
back to a single Lua context
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diff
changeset
|
450 |
2616
2f3007bf0708
event queues in Lua, serialization of sequence of operations
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2612
diff
changeset
|
451 if (!lock.GetLua().IsExistingFunction(LUA_CALLBACK)) |
2218
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
452 { |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
453 return false; |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
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parents:
2208
diff
changeset
|
454 } |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
455 else |
3eefb84ac0bd
dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
456 { |
2827
d4fd4614f275
IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
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parents:
2617
diff
changeset
|
457 Json::Value origin; |
d4fd4614f275
IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
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parents:
2617
diff
changeset
|
458 FormatOrigin(origin, remoteIp, remoteAet, calledAet, manufacturer); |
1888
512b6e76f531
Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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459 |
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460 LuaFunctionCall call(lock.GetLua(), LUA_CALLBACK); |
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461 call.PushDicom(source); |
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462 call.PushJson(origin); |
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463 FromDcmtkBridge::ExecuteToDicom(target, call); |
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464 |
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465 return true; |
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466 } |
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467 } |
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468 |
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469 |
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470 OrthancFindRequestHandler::OrthancFindRequestHandler(ServerContext& context) : |
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471 context_(context), |
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472 maxResults_(0), |
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473 maxInstances_(0) |
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474 { |
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475 } |
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476 |
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477 |
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478 class OrthancFindRequestHandler::LookupVisitor : public ServerContext::ILookupVisitor |
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479 { |
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480 private: |
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481 DicomFindAnswers& answers_; |
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482 ServerContext& context_; |
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483 ResourceType level_; |
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484 const DicomMap& query_; |
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485 DicomArray queryAsArray_; |
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486 const std::list<DicomTag>& sequencesToReturn_; |
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487 |
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488 public: |
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489 LookupVisitor(DicomFindAnswers& answers, |
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490 ServerContext& context, |
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491 ResourceType level, |
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492 const DicomMap& query, |
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493 const std::list<DicomTag>& sequencesToReturn) : |
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494 answers_(answers), |
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495 context_(context), |
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496 level_(level), |
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497 query_(query), |
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498 queryAsArray_(query), |
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499 sequencesToReturn_(sequencesToReturn) |
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500 { |
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501 answers_.SetComplete(false); |
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502 } |
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503 |
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504 virtual bool IsDicomAsJsonNeeded() const |
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505 { |
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506 // Ask the "DICOM-as-JSON" attachment only if sequences are to |
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507 // be returned OR if "query_" contains non-main DICOM tags! |
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508 |
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509 DicomMap withoutSpecialTags; |
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510 withoutSpecialTags.Assign(query_); |
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511 |
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512 // Check out "ComputeCounters()" |
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513 withoutSpecialTags.Remove(DICOM_TAG_MODALITIES_IN_STUDY); |
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514 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES); |
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515 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES); |
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516 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES); |
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517 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES); |
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518 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES); |
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519 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES); |
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520 withoutSpecialTags.Remove(DICOM_TAG_SOP_CLASSES_IN_STUDY); |
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521 |
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522 // Check out "AddAnswer()" |
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523 withoutSpecialTags.Remove(DICOM_TAG_SPECIFIC_CHARACTER_SET); |
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524 withoutSpecialTags.Remove(DICOM_TAG_QUERY_RETRIEVE_LEVEL); |
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525 |
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526 return (!sequencesToReturn_.empty() || |
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527 !withoutSpecialTags.HasOnlyMainDicomTags()); |
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528 } |
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529 |
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530 virtual void MarkAsComplete() |
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531 { |
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532 answers_.SetComplete(true); |
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533 } |
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534 |
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535 virtual void Visit(const std::string& publicId, |
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536 const std::string& instanceId, |
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537 const DicomMap& mainDicomTags, |
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538 const Json::Value* dicomAsJson) |
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539 { |
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540 std::unique_ptr<DicomMap> counters(ComputeCounters(context_, instanceId, level_, query_)); |
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541 |
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542 AddAnswer(answers_, mainDicomTags, dicomAsJson, |
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543 queryAsArray_, sequencesToReturn_, counters.get()); |
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544 } |
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545 }; |
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546 |
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547 |
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548 void OrthancFindRequestHandler::Handle(DicomFindAnswers& answers, |
665 | 549 const DicomMap& input, |
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550 const std::list<DicomTag>& sequencesToReturn, |
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551 const std::string& remoteIp, |
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552 const std::string& remoteAet, |
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553 const std::string& calledAet, |
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554 ModalityManufacturer manufacturer) |
565
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555 { |
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556 MetricsRegistry::Timer timer(context_.GetMetricsRegistry(), "orthanc_find_scp_duration_ms"); |
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557 |
565
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558 /** |
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559 * Possibly apply the user-supplied Lua filter. |
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560 **/ |
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561 |
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562 DicomMap lua; |
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563 const DicomMap* filteredInput = &input; |
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564 |
2827
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565 if (ApplyLuaFilter(lua, input, remoteIp, remoteAet, calledAet, manufacturer)) |
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566 { |
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567 filteredInput = &lua; |
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|
568 } |
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569 |
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570 |
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|
571 /** |
565
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572 * Retrieve the query level. |
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573 **/ |
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574 |
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575 assert(filteredInput != NULL); |
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576 const DicomValue* levelTmp = filteredInput->TestAndGetValue(DICOM_TAG_QUERY_RETRIEVE_LEVEL); |
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577 if (levelTmp == NULL || |
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578 levelTmp->IsNull() || |
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579 levelTmp->IsBinary()) |
565
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580 { |
2955 | 581 throw OrthancException(ErrorCode_BadRequest, |
582 "C-FIND request without the tag 0008,0052 (QueryRetrieveLevel)"); | |
565
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583 } |
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584 |
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585 ResourceType level = StringToResourceType(levelTmp->GetContent().c_str()); |
565
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586 |
714
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587 if (level != ResourceType_Patient && |
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588 level != ResourceType_Study && |
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589 level != ResourceType_Series && |
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590 level != ResourceType_Instance) |
565
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591 { |
714
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592 throw OrthancException(ErrorCode_NotImplemented); |
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593 } |
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594 |
665 | 595 |
1888
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596 DicomArray query(*filteredInput); |
714
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597 LOG(INFO) << "DICOM C-Find request at level: " << EnumerationToString(level); |
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598 |
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599 for (size_t i = 0; i < query.GetSize(); i++) |
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600 { |
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601 if (!query.GetElement(i).GetValue().IsNull()) |
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|
602 { |
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603 LOG(INFO) << " " << query.GetElement(i).GetTag() |
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604 << " " << FromDcmtkBridge::GetTagName(query.GetElement(i)) |
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605 << " = " << query.GetElement(i).GetValue().GetContent(); |
714
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606 } |
565
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607 } |
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608 |
1859
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609 for (std::list<DicomTag>::const_iterator it = sequencesToReturn.begin(); |
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610 it != sequencesToReturn.end(); ++it) |
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611 { |
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612 LOG(INFO) << " (" << it->Format() |
2115
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613 << ") " << FromDcmtkBridge::GetTagName(*it, "") |
1859
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614 << " : sequence tag whose content will be copied"; |
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615 } |
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616 |
565
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|
617 |
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618 /** |
1361
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619 * Build up the query object. |
608 | 620 **/ |
621 | |
3033
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622 DatabaseLookup lookup; |
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623 |
2940
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624 bool caseSensitivePN; |
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625 |
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|
626 { |
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627 OrthancConfiguration::ReaderLock lock; |
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628 caseSensitivePN = lock.GetConfiguration().GetBooleanParameter("CaseSensitivePN", false); |
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|
629 } |
2256
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|
630 |
1361
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631 for (size_t i = 0; i < query.GetSize(); i++) |
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|
632 { |
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|
633 const DicomElement& element = query.GetElement(i); |
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634 const DicomTag tag = element.GetTag(); |
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635 |
2115
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636 if (element.GetValue().IsNull() || |
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637 tag == DICOM_TAG_QUERY_RETRIEVE_LEVEL || |
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638 tag == DICOM_TAG_SPECIFIC_CHARACTER_SET) |
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639 { |
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640 continue; |
714
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|
641 } |
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642 |
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|
643 std::string value = element.GetValue().GetContent(); |
1429
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644 if (value.size() == 0) |
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|
645 { |
3163
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
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646 // An empty string corresponds to an universal constraint, so we ignore it |
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647 continue; |
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|
648 } |
611
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|
649 |
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650 if (FilterQueryTag(value, level, tag, manufacturer)) |
1851
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OrthancFindRequestHandler::FilterQueryTag
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651 { |
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more generic support of value representations
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|
652 ValueRepresentation vr = FromDcmtkBridge::LookupValueRepresentation(tag); |
1758 | 653 |
1851
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OrthancFindRequestHandler::FilterQueryTag
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654 // DICOM specifies that searches must be case sensitive, except |
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|
655 // for tags with a PN value representation |
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OrthancFindRequestHandler::FilterQueryTag
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|
656 bool sensitive = true; |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
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657 if (vr == ValueRepresentation_PersonName) |
1851
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OrthancFindRequestHandler::FilterQueryTag
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diff
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|
658 { |
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659 sensitive = caseSensitivePN; |
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OrthancFindRequestHandler::FilterQueryTag
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|
660 } |
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OrthancFindRequestHandler::FilterQueryTag
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changeset
|
661 |
3033
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|
662 lookup.AddDicomConstraint(tag, value, sensitive, true /* mandatory */); |
1851
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OrthancFindRequestHandler::FilterQueryTag
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changeset
|
663 } |
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OrthancFindRequestHandler::FilterQueryTag
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|
664 else |
1758 | 665 { |
1851
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OrthancFindRequestHandler::FilterQueryTag
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diff
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|
666 LOG(INFO) << "Because of a patch for the manufacturer of the remote modality, " |
2115
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Handling of private tags/creators in the "Dictionary" configuration option
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|
667 << "ignoring constraint on tag (" << tag.Format() << ") " << FromDcmtkBridge::GetTagName(element); |
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668 } |
611
9924aec1d694
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610
diff
changeset
|
669 } |
9924aec1d694
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610
diff
changeset
|
670 |
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|
671 |
608 | 672 /** |
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|
673 * Run the query. |
565
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|
674 **/ |
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|
675 |
2876 | 676 size_t limit = (level == ResourceType_Instance) ? maxInstances_ : maxResults_; |
941
83489fddd8c5
Options to limit the number of results for an incoming C-FIND query
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diff
changeset
|
677 |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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parents:
3005
diff
changeset
|
678 |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
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parents:
3001
diff
changeset
|
679 LookupVisitor visitor(answers, context_, level, *filteredInput, sequencesToReturn); |
3033
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680 context_.Apply(visitor, lookup, level, 0 /* "since" is not relevant to C-FIND */, limit); |
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681 } |
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IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
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682 |
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683 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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684 void OrthancFindRequestHandler::FormatOrigin(Json::Value& origin, |
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685 const std::string& remoteIp, |
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parents:
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686 const std::string& remoteAet, |
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687 const std::string& calledAet, |
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parents:
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688 ModalityManufacturer manufacturer) |
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parents:
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689 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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690 origin = Json::objectValue; |
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parents:
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691 origin["RemoteIp"] = remoteIp; |
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parents:
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692 origin["RemoteAet"] = remoteAet; |
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693 origin["CalledAet"] = calledAet; |
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694 origin["Manufacturer"] = EnumerationToString(manufacturer); |
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parents:
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695 } |
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696 } |