Mercurial > hg > orthanc-wsi
view ViewerPlugin/Plugin.cpp @ 97:e6c8a0dcd840
fix mainline version
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 23 Dec 2016 17:08:02 +0100 |
parents | a8c90aa32ca6 |
children | ff0ef01c332c |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "../Framework/PrecompiledHeadersWSI.h" #include "DicomPyramidCache.h" #include "../Framework/Jpeg2000Reader.h" #include "../Resources/Orthanc/Core/Images/ImageProcessing.h" #include "../Resources/Orthanc/Core/Images/PngWriter.h" #include "../Resources/Orthanc/Core/MultiThreading/Semaphore.h" #include "../Resources/Orthanc/Core/OrthancException.h" #include "../Resources/Orthanc/Plugins/Samples/Common/OrthancPluginCppWrapper.h" #include "../Resources/Orthanc/Plugins/Samples/Common/OrthancPluginConnection.h" #include <EmbeddedResources.h> #include <cassert> OrthancPluginContext* context_ = NULL; std::auto_ptr<OrthancPlugins::OrthancPluginConnection> orthanc_; std::auto_ptr<OrthancWSI::DicomPyramidCache> cache_; std::auto_ptr<Orthanc::Semaphore> transcoderSemaphore_; static void AnswerSparseTile(OrthancPluginRestOutput* output, unsigned int tileWidth, unsigned int tileHeight) { Orthanc::Image tile(Orthanc::PixelFormat_RGB24, tileWidth, tileHeight, false); // Black (TODO parameter) uint8_t red = 0; uint8_t green = 0; uint8_t blue = 0; Orthanc::ImageProcessing::Set(tile, red, green, blue, 255); // TODO Cache the tile OrthancPluginCompressAndAnswerPngImage(context_, output, OrthancPluginPixelFormat_RGB24, tile.GetWidth(), tile.GetHeight(), tile.GetPitch(), tile.GetBuffer()); } static bool DisplayPerformanceWarning() { (void) DisplayPerformanceWarning; // Disable warning about unused function OrthancPluginLogWarning(context_, "Performance warning in whole-slide imaging: " "Non-release build, runtime debug assertions are turned on"); return true; } void ServePyramid(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { std::string seriesId(request->groups[0]); char tmp[1024]; sprintf(tmp, "Accessing whole-slide pyramid of series %s", seriesId.c_str()); OrthancPluginLogInfo(context_, tmp); OrthancWSI::DicomPyramidCache::Locker locker(*cache_, seriesId); unsigned int tileWidth = locker.GetPyramid().GetTileWidth(); unsigned int tileHeight = locker.GetPyramid().GetTileHeight(); unsigned int totalWidth = locker.GetPyramid().GetLevelWidth(0); unsigned int totalHeight = locker.GetPyramid().GetLevelHeight(0); Json::Value sizes = Json::arrayValue; Json::Value resolutions = Json::arrayValue; Json::Value tilesCount = Json::arrayValue; for (unsigned int i = 0; i < locker.GetPyramid().GetLevelCount(); i++) { unsigned int levelWidth = locker.GetPyramid().GetLevelWidth(i); unsigned int levelHeight = locker.GetPyramid().GetLevelHeight(i); resolutions.append(static_cast<float>(totalWidth) / static_cast<float>(levelWidth)); Json::Value s = Json::arrayValue; s.append(levelWidth); s.append(levelHeight); sizes.append(s); s = Json::arrayValue; s.append(OrthancWSI::CeilingDivision(levelWidth, tileWidth)); s.append(OrthancWSI::CeilingDivision(levelHeight, tileHeight)); tilesCount.append(s); } Json::Value result; result["ID"] = seriesId; result["Resolutions"] = resolutions; result["Sizes"] = sizes; result["TileHeight"] = tileHeight; result["TileWidth"] = tileWidth; result["TilesCount"] = tilesCount; result["TotalHeight"] = totalHeight; result["TotalWidth"] = totalWidth; std::string s = result.toStyledString(); OrthancPluginAnswerBuffer(context_, output, s.c_str(), s.size(), "application/json"); } void ServeTile(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { std::string seriesId(request->groups[0]); int level = boost::lexical_cast<int>(request->groups[1]); int tileY = boost::lexical_cast<int>(request->groups[3]); int tileX = boost::lexical_cast<int>(request->groups[2]); char tmp[1024]; sprintf(tmp, "Accessing tile in series %s: (%d,%d) at level %d", seriesId.c_str(), tileX, tileY, level); OrthancPluginLogInfo(context_, tmp); if (level < 0 || tileX < 0 || tileY < 0) { throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); } // Retrieve the raw tile from the WSI pyramid OrthancWSI::ImageCompression compression; Orthanc::PixelFormat format; std::string tile; unsigned int tileWidth, tileHeight; { OrthancWSI::DicomPyramidCache::Locker locker(*cache_, seriesId); format = locker.GetPyramid().GetPixelFormat(); tileWidth = locker.GetPyramid().GetTileWidth(); tileHeight = locker.GetPyramid().GetTileHeight(); if (!locker.GetPyramid().ReadRawTile(tile, compression, static_cast<unsigned int>(level), static_cast<unsigned int>(tileX), static_cast<unsigned int>(tileY))) { // Handling of missing tile (for sparse tiling): TODO parameter? // AnswerSparseTile(output, tileWidth, tileHeight); return; throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); } } // Test whether the tile is a JPEG image. In such a case, we can // serve it as such, because any Web browser can handle JPEG if (compression == OrthancWSI::ImageCompression_Jpeg) { OrthancPluginAnswerBuffer(context_, output, tile.c_str(), tile.size(), "image/jpeg"); return; // We're done } // The tile does not come from a DICOM-JPEG instance, we need to // decompress the raw tile std::auto_ptr<Orthanc::ImageAccessor> decoded; Orthanc::Semaphore::Locker locker(*transcoderSemaphore_); switch (compression) { case OrthancWSI::ImageCompression_Jpeg2000: decoded.reset(new OrthancWSI::Jpeg2000Reader); dynamic_cast<OrthancWSI::Jpeg2000Reader&>(*decoded).ReadFromMemory(tile); break; case OrthancWSI::ImageCompression_None: { unsigned int bpp = Orthanc::GetBytesPerPixel(format); if (bpp * tileWidth * tileHeight != tile.size()) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); } decoded.reset(new Orthanc::ImageAccessor); decoded->AssignReadOnly(format, tileWidth, tileHeight, bpp * tileWidth, tile.c_str()); break; } default: throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); } // This is a lossless frame (coming from a JPEG2000 or uncompressed // DICOM instance), serve it as a PNG image so as to prevent lossy // compression std::string png; Orthanc::PngWriter writer; writer.WriteToMemory(png, *decoded); OrthancPluginAnswerBuffer(context_, output, png.c_str(), png.size(), "image/png"); } OrthancPluginErrorCode OnChangeCallback(OrthancPluginChangeType changeType, OrthancPluginResourceType resourceType, const char *resourceId) { if (resourceType == OrthancPluginResourceType_Series && changeType == OrthancPluginChangeType_NewChildInstance) { char tmp[1024]; sprintf(tmp, "New instance has been added to series %s, invalidating it", resourceId); OrthancPluginLogInfo(context_, tmp); cache_->Invalidate(resourceId); } return OrthancPluginErrorCode_Success; } void ServeFile(OrthancPluginRestOutput* output, const char* url, const OrthancPluginHttpRequest* request) { Orthanc::EmbeddedResources::FileResourceId resource; std::string f(request->groups[0]); std::string mime; if (f == "viewer.html") { resource = Orthanc::EmbeddedResources::VIEWER_HTML; mime = "text/html"; } else if (f == "viewer.js") { resource = Orthanc::EmbeddedResources::VIEWER_JS; mime = "application/javascript"; } else if (f == "ol.js") { resource = Orthanc::EmbeddedResources::OPENLAYERS_JS; mime = "application/javascript"; } else if (f == "ol.css") { resource = Orthanc::EmbeddedResources::OPENLAYERS_CSS; mime = "text/css"; } else { throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); } std::string content; Orthanc::EmbeddedResources::GetFileResource(content, resource); OrthancPluginAnswerBuffer(context_, output, content.c_str(), content.size(), mime.c_str()); } extern "C" { ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context) { context_ = context; assert(DisplayPerformanceWarning()); /* Check the version of the Orthanc core */ if (OrthancPluginCheckVersion(context_) == 0) { char info[1024]; sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin", context_->orthancVersion, ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER, ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER, ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER); OrthancPluginLogError(context_, info); return -1; } if (!OrthancPlugins::CheckMinimalOrthancVersion(context_, 1, 1, 0)) { // We need the "/instances/.../frames/.../raw" URI that was introduced in Orthanc 1.1.0 return -1; } // Limit the number of PNG transcoders to the number of available // hardware threads (e.g. number of CPUs or cores or // hyperthreading units) unsigned int threads = boost::thread::hardware_concurrency(); if (threads <= 0) { threads = 1; } transcoderSemaphore_.reset(new Orthanc::Semaphore(threads)); char info[1024]; sprintf(info, "The whole-slide imaging plugin will use at most %d threads to transcode the tiles", threads); OrthancPluginLogWarning(context_, info); OrthancPluginSetDescription(context, "Provides a Web viewer of whole-slide microscopic images within Orthanc."); orthanc_.reset(new OrthancPlugins::OrthancPluginConnection(context)); cache_.reset(new OrthancWSI::DicomPyramidCache(*orthanc_, 10 /* Number of pyramids to be cached - TODO parameter */)); OrthancPluginRegisterOnChangeCallback(context_, OnChangeCallback); OrthancPlugins::RegisterRestCallback<ServeFile>(context, "/wsi/app/(ol.css)", true); OrthancPlugins::RegisterRestCallback<ServeFile>(context, "/wsi/app/(ol.js)", true); OrthancPlugins::RegisterRestCallback<ServeFile>(context, "/wsi/app/(viewer.html)", true); OrthancPlugins::RegisterRestCallback<ServeFile>(context, "/wsi/app/(viewer.js)", true); OrthancPlugins::RegisterRestCallback<ServePyramid>(context, "/wsi/pyramids/([0-9a-f-]+)", true); OrthancPlugins::RegisterRestCallback<ServeTile>(context, "/wsi/tiles/([0-9a-f-]+)/([0-9-]+)/([0-9-]+)/([0-9-]+)", true); // Extend the default Orthanc Explorer with custom JavaScript for WSI std::string explorer; Orthanc::EmbeddedResources::GetFileResource(explorer, Orthanc::EmbeddedResources::ORTHANC_EXPLORER); OrthancPluginExtendOrthancExplorer(context_, explorer.c_str()); return 0; } ORTHANC_PLUGINS_API void OrthancPluginFinalize() { cache_.reset(NULL); orthanc_.reset(NULL); transcoderSemaphore_.reset(NULL); } ORTHANC_PLUGINS_API const char* OrthancPluginGetName() { return "wsi"; } ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion() { return ORTHANC_WSI_VERSION; } }