Mercurial > hg > orthanc-wsi
view Framework/Inputs/OpenSlidePyramid.cpp @ 358:9e4dcbb578e3
handling of background color depending on photometric interpretation
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 20 Dec 2024 15:28:19 +0100 |
parents | 82d976848b34 |
children |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2023 Osimis S.A., Belgium * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "../PrecompiledHeadersWSI.h" #include "OpenSlidePyramid.h" #include <Compatibility.h> // For std::unique_ptr #include <Images/ImageProcessing.h> #include <OrthancException.h> #include <SerializationToolbox.h> #include <Logging.h> #include <boost/math/special_functions/round.hpp> #include <memory> namespace OrthancWSI { // Test whether the full alpha channel (if any) equals 255 static bool IsFullyTransparent(const Orthanc::ImageAccessor& source) { if (source.GetFormat() == Orthanc::PixelFormat_BGRA32 || source.GetFormat() == Orthanc::PixelFormat_RGBA32) { const unsigned int width = source.GetWidth(); const unsigned int height = source.GetHeight(); bool isEmpty = true; for (unsigned int yy = 0; yy < height && isEmpty; yy++) { const uint8_t* p = reinterpret_cast<const uint8_t*>(source.GetConstRow(yy)); for (unsigned int xx = 0; xx < width && isEmpty; xx++) { if (p[3] != 0) { isEmpty = false; } p += 4; } } return isEmpty; } else { return false; } } void OpenSlidePyramid::ReadRegion(Orthanc::ImageAccessor& target, bool& isEmpty, unsigned int level, unsigned int x, unsigned int y) { std::unique_ptr<Orthanc::ImageAccessor> source(image_.ReadRegion(level, x, y, target.GetWidth(), target.GetHeight())); if (target.GetWidth() != source->GetWidth() || target.GetHeight() != source->GetHeight()) { throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageSize); } isEmpty = IsFullyTransparent(*source); const unsigned int width = source->GetWidth(); const unsigned int height = source->GetHeight(); if (target.GetFormat() == Orthanc::PixelFormat_RGB24 && source->GetFormat() == Orthanc::PixelFormat_BGRA32) { // Implements alpha blending: https://en.wikipedia.org/wiki/Alpha_compositing#Alpha_blending uint8_t backgroundRed, backgroundGreen, backgroundBlue; GetBackgroundColor(backgroundRed, backgroundGreen, backgroundBlue); for (unsigned int yy = 0; yy < height; yy++) { const uint8_t* p = reinterpret_cast<const uint8_t*>(source->GetConstRow(yy)); uint8_t* q = reinterpret_cast<uint8_t*>(target.GetRow(yy)); for (unsigned int xx = 0; xx < width; xx++) { /** Alpha blending using integer arithmetics only (16 bits avoids overflows) p = (1 - alpha) * background + alpha * value <=> p = (1 - p[3] / 255) * background + p[3] / 255 * value <=> p = ((255 - p[3]) * background + p[3] * value) / 255 **/ uint16_t alpha = p[3]; q[0] = static_cast<uint8_t>(((255 - alpha) * backgroundRed + alpha * p[2]) / 255); q[1] = static_cast<uint8_t>(((255 - alpha) * backgroundGreen + alpha * p[1]) / 255); q[2] = static_cast<uint8_t>(((255 - alpha) * backgroundBlue + alpha * p[0]) / 255); p += 4; q += 3; } } } else { Orthanc::ImageProcessing::Convert(target, *source); } } OpenSlidePyramid::OpenSlidePyramid(const std::string& path, unsigned int tileWidth, unsigned int tileHeight) : image_(path), tileWidth_(tileWidth), tileHeight_(tileHeight) { } bool OpenSlidePyramid::LookupImagedVolumeSize(float& width, float& height) const { std::string s; double mppx; double mppy; if (image_.LookupProperty(s, "openslide.mpp-x") && Orthanc::SerializationToolbox::ParseDouble(mppx, s) && image_.LookupProperty(s, "openslide.mpp-y") && Orthanc::SerializationToolbox::ParseDouble(mppy, s)) { // In the 2 lines below, remember to switch X/Y when going from physical to pixel coordinates! width = mppy / 1000.0 * static_cast<double>(image_.GetLevelHeight(0)); height = mppx / 1000.0 * static_cast<double>(image_.GetLevelWidth(0)); return true; } else { return false; } } size_t OpenSlidePyramid::GetMemoryUsage() const { size_t countPixels = 0; for (unsigned int i = 0; i < image_.GetLevelCount(); i++) { countPixels += image_.GetLevelWidth(i) * image_.GetLevelHeight(i); } return countPixels * Orthanc::GetBytesPerPixel(Orthanc::PixelFormat_RGBA32); } }