Mercurial > hg > orthanc-wsi
view Framework/ImageToolbox.cpp @ 243:7d189530d648
added class CytomineImage
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 06 Dec 2021 16:15:10 +0100 |
parents | 49f647ed1b4c |
children | 20a730889ae2 |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2021 Osimis S.A., Belgium * Copyright (C) 2021-2021 Sebastien Jodogne, ICTEAM UCLouvain, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "PrecompiledHeadersWSI.h" #include "ImageToolbox.h" #include "Jpeg2000Reader.h" #include "Jpeg2000Writer.h" #include <Compatibility.h> // For std::unique_ptr #include <OrthancException.h> #include <Images/ImageProcessing.h> #include <Images/PngReader.h> #include <Images/PngWriter.h> #include <Images/JpegReader.h> #include <Images/JpegWriter.h> #include <Logging.h> #include <string.h> #include <memory> namespace OrthancWSI { namespace ImageToolbox { Orthanc::ImageAccessor* Allocate(Orthanc::PixelFormat format, unsigned int width, unsigned int height) { return new Orthanc::Image(format, width, height, false); } void Embed(const Orthanc::ImageAccessor& target, const Orthanc::ImageAccessor& source, unsigned int x, unsigned int y) { if (target.GetFormat() != source.GetFormat()) { throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat); } if (x >= target.GetWidth() || y >= target.GetHeight()) { return; } unsigned int h = std::min(source.GetHeight(), target.GetHeight() - y); unsigned int w = std::min(source.GetWidth(), target.GetWidth() - x); Orthanc::ImageAccessor targetRegion, sourceRegion; target.GetRegion(targetRegion, x, y, w, h); source.GetRegion(sourceRegion, 0, 0, w, h); Orthanc::ImageProcessing::Copy(targetRegion, sourceRegion); } void Set(Orthanc::ImageAccessor& image, uint8_t r, uint8_t g, uint8_t b) { switch (image.GetFormat()) { case Orthanc::PixelFormat_Grayscale8: { #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 9, 0) Orthanc::ImageProcessing::Set(image, r, g, b, 0 /* alpha is ignored */); #else uint8_t grayscale = (2126 * static_cast<uint16_t>(r) + 7152 * static_cast<uint16_t>(g) + 0722 * static_cast<uint16_t>(b)) / 10000; Orthanc::ImageProcessing::Set(image, grayscale); #endif break; } case Orthanc::PixelFormat_RGB24: Orthanc::ImageProcessing::Set(image, r, g, b, 0 /* alpha is ignored */); break; default: throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); } } Orthanc::ImageAccessor* DecodeTile(const std::string& source, ImageCompression compression) { switch (compression) { case ImageCompression_Png: { std::unique_ptr<Orthanc::PngReader> reader(new Orthanc::PngReader); reader->ReadFromMemory(source); return reader.release(); } case ImageCompression_Jpeg: { std::unique_ptr<Orthanc::JpegReader> reader(new Orthanc::JpegReader); reader->ReadFromMemory(source); return reader.release(); } case ImageCompression_Jpeg2000: { std::unique_ptr<Jpeg2000Reader> reader(new Jpeg2000Reader); reader->ReadFromMemory(source); return reader.release(); } default: throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); } } Orthanc::ImageAccessor* DecodeRawTile(const std::string& source, Orthanc::PixelFormat format, unsigned int width, unsigned int height) { unsigned int bpp = GetBytesPerPixel(format); if (bpp * width * height != source.size()) { throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageSize); } Orthanc::ImageAccessor accessor; accessor.AssignReadOnly(format, width, height, bpp * width, source.empty() ? NULL : source.c_str()); return Orthanc::Image::Clone(accessor); } void EncodeTile(std::string& target, const Orthanc::ImageAccessor& source, ImageCompression compression, uint8_t quality) { if (compression == ImageCompression_None) { unsigned int pitch = GetBytesPerPixel(source.GetFormat()) * source.GetWidth(); target.resize(pitch * source.GetHeight()); const unsigned int height = source.GetHeight(); for (unsigned int i = 0; i < height; i++) { memcpy(&target[i * pitch], source.GetConstRow(i), pitch); } } else { std::unique_ptr<Orthanc::IImageWriter> writer; switch (compression) { case ImageCompression_Png: writer.reset(new Orthanc::PngWriter); break; case ImageCompression_Jpeg: writer.reset(new Orthanc::JpegWriter); dynamic_cast<Orthanc::JpegWriter&>(*writer).SetQuality(quality); break; case ImageCompression_Jpeg2000: writer.reset(new Jpeg2000Writer); break; default: throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); } Orthanc::IImageWriter::WriteToMemory(*writer, target, source); } } void ChangeTileCompression(std::string& target, const std::string& source, ImageCompression sourceCompression, ImageCompression targetCompression, uint8_t quality) { if (sourceCompression == targetCompression) { target = source; } else { std::unique_ptr<Orthanc::ImageAccessor> decoded(DecodeTile(source, sourceCompression)); EncodeTile(target, *decoded, targetCompression, quality); } } Orthanc::ImageAccessor* Render(ITiledPyramid& pyramid, unsigned int level) { std::unique_ptr<Orthanc::ImageAccessor> result(Allocate(pyramid.GetPixelFormat(), pyramid.GetLevelWidth(level), pyramid.GetLevelHeight(level))); LOG(INFO) << "Rendering a tiled image of size " << result->GetWidth() << "x" << result->GetHeight(); const unsigned int width = result->GetWidth(); const unsigned int height = result->GetHeight(); for (unsigned int y = 0; y < height; y += pyramid.GetTileHeight(level)) { for (unsigned int x = 0; x < width; x += pyramid.GetTileWidth(level)) { std::unique_ptr<Orthanc::ImageAccessor> tile( pyramid.DecodeTile(level, x / pyramid.GetTileWidth(level), y / pyramid.GetTileHeight(level))); Embed(*result, *tile, x, y); } } return result.release(); } void CheckConstantTileSize(const ITiledPyramid& source) { if (source.GetLevelCount() == 0) { throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageSize, "Input pyramid has no level"); } else { for (unsigned int level = 0; level < source.GetLevelCount(); level++) { if (source.GetTileWidth(level) != source.GetTileWidth(0) || source.GetTileHeight(level) != source.GetTileHeight(0)) { throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageSize, "The DICOMizer requires that the input pyramid has constant " "tile sizes across all its levels, which is not the case"); } } } } void ConvertJpegYCbCrToRgb(Orthanc::ImageAccessor& image) { #if defined(ORTHANC_FRAMEWORK_VERSION_IS_ABOVE) && ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 9, 0) Orthanc::ImageProcessing::ConvertJpegYCbCrToRgb(image); #else # if defined(__GNUC__) || defined(__clang__) # warning You are using an old version of the Orthanc framework # endif const unsigned int width = image.GetWidth(); const unsigned int height = image.GetHeight(); const unsigned int pitch = image.GetPitch(); uint8_t* buffer = reinterpret_cast<uint8_t*>(image.GetBuffer()); if (image.GetFormat() != Orthanc::PixelFormat_RGB24 || pitch < 3 * width) { throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat); } for (unsigned int y = 0; y < height; y++) { uint8_t* p = buffer + y * pitch; for (unsigned int x = 0; x < width; x++, p += 3) { const float Y = p[0]; const float Cb = p[1]; const float Cr = p[2]; const float result[3] = { Y + 1.402f * (Cr - 128.0f), Y - 0.344136f * (Cb - 128.0f) - 0.714136f * (Cr - 128.0f), Y + 1.772f * (Cb - 128.0f) }; for (uint8_t i = 0; i < 3 ; i++) { if (result[i] < 0) { p[i] = 0; } else if (result[i] > 255) { p[i] = 255; } else { p[i] = static_cast<uint8_t>(result[i]); } } } } #endif } } }