annotate Framework/Inputs/DicomPyramid.h @ 334:f011fc199b6a default tip

back to mainline
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 18 Oct 2024 15:44:18 +0200
parents c42083d50ddf
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
312
0683312e21ba updated copyright, as Orthanc Team now replaces Osimis
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 309
diff changeset
5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
0683312e21ba updated copyright, as Orthanc Team now replaces Osimis
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 309
diff changeset
6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
309
7020852a8fa9 updated year to 2024
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 254
diff changeset
7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * This program is free software: you can redistribute it and/or
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * modify it under the terms of the GNU Affero General Public License
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * as published by the Free Software Foundation, either version 3 of
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * the License, or (at your option) any later version.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * This program is distributed in the hope that it will be useful, but
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * WITHOUT ANY WARRANTY; without even the implied warranty of
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * Affero General Public License for more details.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 * You should have received a copy of the GNU Affero General Public License
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 * along with this program. If not, see <http://www.gnu.org/licenses/>.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 **/
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 #pragma once
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 #include "PyramidWithRawTiles.h"
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 #include "DicomPyramidInstance.h"
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 #include "DicomPyramidLevel.h"
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 namespace OrthancWSI
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 class DicomPyramid : public PyramidWithRawTiles
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 private:
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 struct Comparator;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 175
diff changeset
37 OrthancStone::IOrthancConnection& orthanc_;
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 175
diff changeset
38 std::string seriesId_;
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 175
diff changeset
39 std::vector<DicomPyramidInstance*> instances_;
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 175
diff changeset
40 std::vector<DicomPyramidLevel*> levels_;
330
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
41 uint8_t backgroundRed_;
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
42 uint8_t backgroundGreen_;
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
43 uint8_t backgroundBlue_;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 void Clear();
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
47 void RegisterInstances(const std::string& seriesId,
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
48 bool useCache);
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 void Check(const std::string& seriesId) const;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 void CheckLevel(size_t level) const;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 public:
196
b0bd22077cd8 sharing code with orthanc-stone
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 175
diff changeset
55 DicomPyramid(OrthancStone::IOrthancConnection& orthanc,
69
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
56 const std::string& seriesId,
d529d9ce3c7e cache for DicomPyramidInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
57 bool useCache);
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 virtual ~DicomPyramid()
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 Clear();
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64 const std::string& GetSeriesId() const
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 return seriesId_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68
216
c35a3a0627b9 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
69 virtual unsigned int GetLevelCount() const ORTHANC_OVERRIDE
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71 return levels_.size();
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73
216
c35a3a0627b9 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
74 virtual unsigned int GetLevelWidth(unsigned int level) const ORTHANC_OVERRIDE;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75
216
c35a3a0627b9 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
76 virtual unsigned int GetLevelHeight(unsigned int level) const ORTHANC_OVERRIDE;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77
217
20bc074ec19a Viewer can display DICOM pyramids whose tile sizes vary across levels
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 216
diff changeset
78 virtual unsigned int GetTileWidth(unsigned int level) const ORTHANC_OVERRIDE;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79
217
20bc074ec19a Viewer can display DICOM pyramids whose tile sizes vary across levels
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 216
diff changeset
80 virtual unsigned int GetTileHeight(unsigned int level) const ORTHANC_OVERRIDE;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82 virtual bool ReadRawTile(std::string& tile,
57
91fc9583b2de big refactoring to support sparse tiling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
83 ImageCompression& compression,
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84 unsigned int level,
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
85 unsigned int tileX,
216
c35a3a0627b9 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
86 unsigned int tileY) ORTHANC_OVERRIDE;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87
216
c35a3a0627b9 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
88 virtual Orthanc::PixelFormat GetPixelFormat() const ORTHANC_OVERRIDE;
166
f0dac1e8f736 access to photometric interpretation of source pyramids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
89
216
c35a3a0627b9 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
90 virtual Orthanc::PhotometricInterpretation GetPhotometricInterpretation() const ORTHANC_OVERRIDE;
330
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
91
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
92 uint8_t GetBackgroundRed() const
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
93 {
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
94 return backgroundRed_;
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
95 }
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
96
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
97 uint8_t GetBackgroundGreen() const
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
98 {
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
99 return backgroundGreen_;
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
100 }
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
101
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
102 uint8_t GetBackgroundBlue() const
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
103 {
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
104 return backgroundBlue_;
c42083d50ddf Added support for DICOM tag "Recommended Absent Pixel CIELab" (0048,0015)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
105 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106 };
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107 }