Mercurial > hg > orthanc-wsi
annotate Applications/Dicomizer.cpp @ 175:e3cbf890b588
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 31 Jan 2020 17:44:03 +0100 |
parents | 1390d5c87603 |
children | ea62c89b264b |
rev | line source |
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0 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
4 * Department, University Hospital of Liege, Belgium | |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU Affero General Public License | |
9 * as published by the Free Software Foundation, either version 3 of | |
10 * the License, or (at your option) any later version. | |
11 * | |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
15 * Affero General Public License for more details. | |
16 * | |
17 * You should have received a copy of the GNU Affero General Public License | |
18 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
19 **/ | |
20 | |
21 | |
22 #include "../Framework/Algorithms/ReconstructPyramidCommand.h" | |
23 #include "../Framework/Algorithms/TranscodeTileCommand.h" | |
24 #include "../Framework/DicomToolbox.h" | |
25 #include "../Framework/DicomizerParameters.h" | |
26 #include "../Framework/ImagedVolumeParameters.h" | |
27 #include "../Framework/Inputs/HierarchicalTiff.h" | |
28 #include "../Framework/Inputs/OpenSlidePyramid.h" | |
29 #include "../Framework/Inputs/TiledJpegImage.h" | |
30 #include "../Framework/Inputs/TiledPngImage.h" | |
31 #include "../Framework/Inputs/TiledPyramidStatistics.h" | |
151 | 32 #include "../Framework/MultiThreading/BagOfTasksProcessor.h" |
0 | 33 #include "../Framework/Outputs/DicomPyramidWriter.h" |
34 #include "../Framework/Outputs/TruncatedPyramidWriter.h" | |
35 | |
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36 #include <Core/DicomParsing/FromDcmtkBridge.h> |
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37 #include <Core/Logging.h> |
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38 #include <Core/OrthancException.h> |
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39 #include <Core/SystemToolbox.h> |
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40 |
0 | 41 #include "ApplicationToolbox.h" |
42 | |
43 #include <EmbeddedResources.h> | |
44 | |
45 #include <dcmtk/dcmdata/dcdeftag.h> | |
46 #include <dcmtk/dcmdata/dcuid.h> | |
47 #include <dcmtk/dcmdata/dcvrobow.h> | |
48 #include <dcmtk/dcmdata/dcvrat.h> | |
49 | |
50 | |
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51 static const char* OPTION_COLOR = "color"; |
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52 static const char* OPTION_COMPRESSION = "compression"; |
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53 static const char* OPTION_DATASET = "dataset"; |
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54 static const char* OPTION_FOLDER = "folder"; |
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55 static const char* OPTION_FOLDER_PATTERN = "folder-pattern"; |
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56 static const char* OPTION_HELP = "help"; |
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57 static const char* OPTION_ICC_PROFILE = "icc-profile"; |
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58 static const char* OPTION_IMAGED_DEPTH = "imaged-depth"; |
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59 static const char* OPTION_IMAGED_HEIGHT = "imaged-height"; |
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60 static const char* OPTION_IMAGED_WIDTH = "imaged-width"; |
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61 static const char* OPTION_INPUT = "input"; |
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62 static const char* OPTION_JPEG_QUALITY = "jpeg-quality"; |
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63 static const char* OPTION_LEVELS = "levels"; |
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64 static const char* OPTION_LOWER_LEVELS = "lower-levels"; |
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65 static const char* OPTION_MAX_SIZE = "max-size"; |
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66 static const char* OPTION_OFFSET_X = "offset-x"; |
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67 static const char* OPTION_OFFSET_Y = "offset-y"; |
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68 static const char* OPTION_OPENSLIDE = "openslide"; |
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69 static const char* OPTION_OPTICAL_PATH = "optical-path"; |
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70 static const char* OPTION_PYRAMID = "pyramid"; |
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71 static const char* OPTION_REENCODE = "reencode"; |
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72 static const char* OPTION_REPAINT = "repaint"; |
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73 static const char* OPTION_SAFETY = "safety"; |
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74 static const char* OPTION_SAMPLE_DATASET = "sample-dataset"; |
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75 static const char* OPTION_SMOOTH = "smooth"; |
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76 static const char* OPTION_THREADS = "threads"; |
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77 static const char* OPTION_TILE_HEIGHT = "tile-height"; |
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78 static const char* OPTION_TILE_WIDTH = "tile-width"; |
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79 static const char* OPTION_VERBOSE = "verbose"; |
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80 static const char* OPTION_VERSION = "version"; |
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81 |
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82 |
0 | 83 static void TranscodePyramid(OrthancWSI::PyramidWriterBase& target, |
84 OrthancWSI::ITiledPyramid& source, | |
85 const OrthancWSI::DicomizerParameters& parameters) | |
86 { | |
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87 LOG(WARNING) << "Transcoding the source pyramid (not re-encoding)"; |
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88 |
0 | 89 Orthanc::BagOfTasks tasks; |
90 | |
91 for (unsigned int i = 0; i < source.GetLevelCount(); i++) | |
92 { | |
93 LOG(WARNING) << "Creating level " << i << " of size " | |
94 << source.GetLevelWidth(i) << "x" << source.GetLevelHeight(i); | |
95 target.AddLevel(source.GetLevelWidth(i), source.GetLevelHeight(i)); | |
96 } | |
97 | |
98 OrthancWSI::TranscodeTileCommand::PrepareBagOfTasks(tasks, target, source, parameters); | |
99 OrthancWSI::ApplicationToolbox::Execute(tasks, parameters.GetThreadsCount()); | |
100 } | |
101 | |
102 | |
103 static void ReconstructPyramid(OrthancWSI::PyramidWriterBase& target, | |
104 OrthancWSI::ITiledPyramid& source, | |
105 const OrthancWSI::DicomizerParameters& parameters) | |
106 { | |
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107 LOG(WARNING) << "Re-encoding the source pyramid (not transcoding, slower process)"; |
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108 |
0 | 109 Orthanc::BagOfTasks tasks; |
110 | |
111 unsigned int levelsCount = parameters.GetPyramidLevelsCount(target, source); | |
112 LOG(WARNING) << "The target pyramid will have " << levelsCount << " levels"; | |
113 assert(levelsCount >= 1); | |
114 | |
115 for (unsigned int i = 0; i < levelsCount; i++) | |
116 { | |
117 unsigned int width = OrthancWSI::CeilingDivision(source.GetLevelWidth(0), 1 << i); | |
118 unsigned int height = OrthancWSI::CeilingDivision(source.GetLevelHeight(0), 1 << i); | |
119 | |
120 LOG(WARNING) << "Creating level " << i << " of size " << width << "x" << height; | |
121 target.AddLevel(width, height); | |
122 } | |
123 | |
124 unsigned int lowerLevelsCount = parameters.GetPyramidLowerLevelsCount(target, source); | |
125 if (lowerLevelsCount > levelsCount) | |
126 { | |
127 LOG(WARNING) << "The number of lower levels (" << lowerLevelsCount | |
128 << ") exceeds the number of levels (" << levelsCount | |
129 << "), cropping it"; | |
130 lowerLevelsCount = levelsCount; | |
131 } | |
132 | |
133 assert(lowerLevelsCount <= levelsCount); | |
134 if (lowerLevelsCount != levelsCount) | |
135 { | |
136 LOG(WARNING) << "Constructing the " << lowerLevelsCount << " lower levels of the pyramid"; | |
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137 OrthancWSI::TruncatedPyramidWriter truncated(target, lowerLevelsCount, source.GetPhotometricInterpretation()); |
0 | 138 OrthancWSI::ReconstructPyramidCommand::PrepareBagOfTasks |
139 (tasks, truncated, source, lowerLevelsCount + 1, 0, parameters); | |
140 OrthancWSI::ApplicationToolbox::Execute(tasks, parameters.GetThreadsCount()); | |
141 | |
142 assert(tasks.GetSize() == 0); | |
143 | |
144 const unsigned int upperLevelsCount = levelsCount - lowerLevelsCount; | |
145 LOG(WARNING) << "Constructing the " << upperLevelsCount << " upper levels of the pyramid"; | |
146 OrthancWSI::ReconstructPyramidCommand::PrepareBagOfTasks | |
147 (tasks, target, truncated.GetUpperLevel(), | |
148 upperLevelsCount, lowerLevelsCount, parameters); | |
149 OrthancWSI::ApplicationToolbox::Execute(tasks, parameters.GetThreadsCount()); | |
150 } | |
151 else | |
152 { | |
153 LOG(WARNING) << "Constructing the pyramid"; | |
154 OrthancWSI::ReconstructPyramidCommand::PrepareBagOfTasks | |
155 (tasks, target, source, levelsCount, 0, parameters); | |
156 OrthancWSI::ApplicationToolbox::Execute(tasks, parameters.GetThreadsCount()); | |
157 } | |
158 } | |
159 | |
160 | |
161 static void Recompress(OrthancWSI::IFileTarget& output, | |
162 OrthancWSI::ITiledPyramid& source, | |
163 const DcmDataset& dataset, | |
164 const OrthancWSI::DicomizerParameters& parameters, | |
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165 const OrthancWSI::ImagedVolumeParameters& volume, |
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166 OrthancWSI::ImageCompression sourceCompression) |
0 | 167 { |
168 OrthancWSI::TiledPyramidStatistics stats(source); | |
169 | |
170 LOG(WARNING) << "Size of source tiles: " << stats.GetTileWidth() << "x" << stats.GetTileHeight(); | |
167
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171 LOG(WARNING) << "Pixel format: " << Orthanc::EnumerationToString(source.GetPixelFormat()); |
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172 LOG(WARNING) << "Source photometric interpretation: " << Orthanc::EnumerationToString(source.GetPhotometricInterpretation()); |
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173 LOG(WARNING) << "Source compression: " << EnumerationToString(sourceCompression); |
0 | 174 LOG(WARNING) << "Smoothing is " << (parameters.IsSmoothEnabled() ? "enabled" : "disabled"); |
175 | |
176 if (parameters.IsRepaintBackground()) | |
177 { | |
178 LOG(WARNING) << "Repainting the background with color: (" | |
179 << static_cast<int>(parameters.GetBackgroundColorRed()) << "," | |
180 << static_cast<int>(parameters.GetBackgroundColorGreen()) << "," | |
181 << static_cast<int>(parameters.GetBackgroundColorBlue()) << ")"; | |
182 } | |
183 else | |
184 { | |
185 LOG(WARNING) << "No repainting of the background"; | |
186 } | |
187 | |
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188 Orthanc::PhotometricInterpretation targetPhotometric; |
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189 bool transcoding; |
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190 |
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191 if (parameters.IsForceReencode() || |
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192 parameters.IsReconstructPyramid() || |
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193 sourceCompression != parameters.GetTargetCompression()) |
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194 { |
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195 // The tiles of the source image will be re-encoded |
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196 transcoding = false; |
171 | 197 |
198 if (source.GetPixelFormat() == Orthanc::PixelFormat_Grayscale8) | |
199 { | |
200 targetPhotometric = source.GetPhotometricInterpretation(); | |
201 } | |
202 else | |
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203 { |
171 | 204 switch (parameters.GetTargetCompression()) |
205 { | |
206 case OrthancWSI::ImageCompression_Jpeg: | |
207 case OrthancWSI::ImageCompression_Jpeg2000: | |
208 targetPhotometric = Orthanc::PhotometricInterpretation_YBRFull422; | |
209 break; | |
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210 |
171 | 211 case OrthancWSI::ImageCompression_None: |
212 targetPhotometric = Orthanc::PhotometricInterpretation_RGB; | |
213 break; | |
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214 |
171 | 215 default: |
216 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
217 } | |
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218 } |
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219 } |
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220 else |
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221 { |
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222 // Transcoding: The tiles are copied (no re-encoding) |
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223 transcoding = true; |
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224 targetPhotometric = source.GetPhotometricInterpretation(); |
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225 } |
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226 |
0 | 227 OrthancWSI::DicomPyramidWriter target(output, dataset, |
228 source.GetPixelFormat(), | |
229 parameters.GetTargetCompression(), | |
230 parameters.GetTargetTileWidth(source), | |
231 parameters.GetTargetTileHeight(source), | |
232 parameters.GetDicomMaxFileSize(), | |
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233 volume, targetPhotometric); |
29 | 234 target.SetJpegQuality(parameters.GetJpegQuality()); |
0 | 235 |
236 LOG(WARNING) << "Size of target tiles: " << target.GetTileWidth() << "x" << target.GetTileHeight(); | |
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237 LOG(WARNING) << "Target photometric interpretation: " << Orthanc::EnumerationToString(targetPhotometric); |
0 | 238 |
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239 if (!transcoding && |
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240 target.GetImageCompression() == OrthancWSI::ImageCompression_Jpeg) |
0 | 241 { |
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242 LOG(WARNING) << "Target compression: Jpeg with quality " |
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243 << static_cast<int>(target.GetJpegQuality()); |
0 | 244 target.SetJpegQuality(target.GetJpegQuality()); |
245 } | |
246 else | |
247 { | |
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248 LOG(WARNING) << "Target compression: " |
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249 << OrthancWSI::EnumerationToString(target.GetImageCompression()); |
0 | 250 } |
251 | |
252 if (stats.GetTileWidth() % target.GetTileWidth() != 0 || | |
253 stats.GetTileHeight() % target.GetTileHeight() != 0) | |
254 { | |
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255 LOG(ERROR) << "When resampling the tile size, " |
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256 << "it must be a integer divisor of the original tile size"; |
0 | 257 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageSize); |
258 } | |
259 | |
260 if (target.GetTileWidth() <= 16 || | |
261 target.GetTileHeight() <= 16) | |
262 { | |
263 LOG(ERROR) << "Tiles are too small (16 pixels minimum): " | |
264 << target.GetTileWidth() << "x" << target.GetTileHeight(); | |
265 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageSize); | |
266 } | |
267 | |
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268 if (transcoding) |
0 | 269 { |
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270 TranscodePyramid(target, stats, parameters); |
0 | 271 } |
272 else | |
273 { | |
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274 ReconstructPyramid(target, stats, parameters); |
0 | 275 } |
276 | |
277 target.Flush(); | |
278 } | |
279 | |
280 | |
281 | |
282 static DcmDataset* ParseDataset(const std::string& path) | |
283 { | |
284 Json::Value json; | |
285 | |
286 if (path.empty()) | |
287 { | |
288 json = Json::objectValue; // Empty dataset => TODO EMBED | |
289 } | |
290 else | |
291 { | |
292 std::string content; | |
43 | 293 Orthanc::SystemToolbox::ReadFile(content, path); |
0 | 294 |
295 Json::Reader reader; | |
296 if (!reader.parse(content, json, false)) | |
297 { | |
298 LOG(ERROR) << "Cannot parse the JSON file in: " << path; | |
299 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); | |
300 } | |
301 } | |
302 | |
303 std::auto_ptr<DcmDataset> dataset(Orthanc::FromDcmtkBridge::FromJson(json, true, true, Orthanc::Encoding_Latin1)); | |
304 if (dataset.get() == NULL) | |
305 { | |
306 LOG(ERROR) << "Cannot convert to JSON file to a DICOM dataset: " << path; | |
307 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); | |
308 } | |
309 | |
310 // VL Whole Slide Microscopy Image IOD | |
311 OrthancWSI::DicomToolbox::SetStringTag(*dataset, DCM_SOPClassUID, "1.2.840.10008.5.1.4.1.1.77.1.6"); | |
312 | |
313 // Slide Microscopy | |
314 OrthancWSI::DicomToolbox::SetStringTag(*dataset, DCM_Modality, "SM"); | |
315 | |
316 // Patient orientation makes no sense in whole-slide images | |
317 OrthancWSI::DicomToolbox::SetStringTag(*dataset, DCM_PatientOrientation, ""); | |
318 | |
319 // Some basic coordinate information | |
320 OrthancWSI::DicomToolbox::SetStringTag(*dataset, DCM_VolumetricProperties, "VOLUME"); | |
321 OrthancWSI::DicomToolbox::SetStringTag(*dataset, DCM_ImageOrientationSlide, "0\\-1\\0\\-1\\0\\0"); | |
322 | |
323 std::string date, time; | |
130 | 324 Orthanc::SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */); |
0 | 325 OrthancWSI::DicomToolbox::SetStringTag(*dataset, DCM_StudyDate, date); |
326 OrthancWSI::DicomToolbox::SetStringTag(*dataset, DCM_StudyTime, time); | |
327 OrthancWSI::DicomToolbox::SetStringTag(*dataset, DCM_SeriesDate, date); | |
328 OrthancWSI::DicomToolbox::SetStringTag(*dataset, DCM_SeriesTime, time); | |
329 OrthancWSI::DicomToolbox::SetStringTag(*dataset, DCM_ContentDate, date); | |
330 OrthancWSI::DicomToolbox::SetStringTag(*dataset, DCM_ContentTime, time); | |
331 OrthancWSI::DicomToolbox::SetStringTag(*dataset, DCM_AcquisitionDateTime, date + time); | |
332 | |
333 return dataset.release(); | |
334 } | |
335 | |
336 | |
337 | |
338 static void SetupDimension(DcmDataset& dataset, | |
339 const std::string& opticalPathId, | |
340 const OrthancWSI::ITiledPyramid& source, | |
341 const OrthancWSI::ImagedVolumeParameters& volume) | |
342 { | |
83 | 343 // Extract the identifier of the Dimension Organization, if provided |
344 std::string organization; | |
0 | 345 DcmItem* previous = OrthancWSI::DicomToolbox::ExtractSingleSequenceItem(dataset, DCM_DimensionOrganizationSequence); |
346 | |
83 | 347 if (previous != NULL && |
348 previous->tagExists(DCM_DimensionOrganizationUID)) | |
349 { | |
350 organization = OrthancWSI::DicomToolbox::GetStringTag(*previous, DCM_DimensionOrganizationUID); | |
351 } | |
352 else | |
0 | 353 { |
83 | 354 // No Dimension Organization provided: Generate an unique identifier |
355 organization = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance); | |
356 } | |
357 | |
358 | |
359 { | |
360 // Construct tag "Dimension Organization Sequence" (0020,9221) | |
361 std::auto_ptr<DcmItem> item(new DcmItem); | |
362 OrthancWSI::DicomToolbox::SetStringTag(*item, DCM_DimensionOrganizationUID, organization); | |
363 | |
364 std::auto_ptr<DcmSequenceOfItems> sequence(new DcmSequenceOfItems(DCM_DimensionOrganizationSequence)); | |
365 | |
366 if (!sequence->insert(item.release(), false, false).good() || | |
367 !dataset.insert(sequence.release(), true /* replace */, false).good()) | |
0 | 368 { |
83 | 369 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
0 | 370 } |
371 } | |
372 | |
83 | 373 |
0 | 374 { |
83 | 375 // Construct tag "Dimension Index Sequence" (0020,9222) |
376 std::auto_ptr<DcmItem> item(new DcmItem); | |
377 OrthancWSI::DicomToolbox::SetStringTag(*item, DCM_DimensionOrganizationUID, organization); | |
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378 OrthancWSI::DicomToolbox::SetAttributeTag(*item, DCM_FunctionalGroupPointer, DCM_PlanePositionSlideSequence); |
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379 OrthancWSI::DicomToolbox::SetAttributeTag(*item, DCM_DimensionIndexPointer, DCM_ColumnPositionInTotalImagePixelMatrix); |
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380 |
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381 std::auto_ptr<DcmItem> item2(new DcmItem); |
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382 OrthancWSI::DicomToolbox::SetStringTag(*item2, DCM_DimensionOrganizationUID, organization); |
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383 OrthancWSI::DicomToolbox::SetAttributeTag(*item2, DCM_FunctionalGroupPointer, DCM_PlanePositionSlideSequence); |
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384 OrthancWSI::DicomToolbox::SetAttributeTag(*item2, DCM_DimensionIndexPointer, DCM_RowPositionInTotalImagePixelMatrix); |
0 | 385 |
83 | 386 std::auto_ptr<DcmSequenceOfItems> sequence(new DcmSequenceOfItems(DCM_DimensionIndexSequence)); |
0 | 387 |
83 | 388 if (!sequence->insert(item.release(), false, false).good() || |
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389 !sequence->insert(item2.release(), false, false).good() || |
83 | 390 !dataset.insert(sequence.release(), true /* replace */, false).good()) |
391 { | |
392 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
393 } | |
0 | 394 } |
395 | |
396 | |
83 | 397 { |
398 // Construct tag "Shared Functional Groups Sequence" (5200,9229) | |
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399 std::auto_ptr<DcmItem> item(new DcmItem); |
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400 |
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401 std::auto_ptr<DcmItem> item3(new DcmItem); |
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402 OrthancWSI::DicomToolbox::SetStringTag(*item3, DCM_OpticalPathIdentifier, opticalPathId); |
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403 |
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404 std::auto_ptr<DcmSequenceOfItems> sequence(new DcmSequenceOfItems(DCM_SharedFunctionalGroupsSequence)); |
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405 std::auto_ptr<DcmSequenceOfItems> sequence3(new DcmSequenceOfItems(DCM_OpticalPathIdentificationSequence)); |
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406 |
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407 if (!sequence3->insert(item3.release(), false, false).good() || |
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408 !item->insert(sequence3.release(), false, false).good() || |
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409 !sequence->insert(item.release(), false, false).good() || |
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410 !dataset.insert(sequence.release(), true /* replace */, false).good()) |
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411 { |
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412 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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413 } |
0 | 414 } |
415 } | |
416 | |
417 | |
418 static void EnrichDataset(DcmDataset& dataset, | |
419 const OrthancWSI::ITiledPyramid& source, | |
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420 OrthancWSI::ImageCompression sourceCompression, |
0 | 421 const OrthancWSI::DicomizerParameters& parameters, |
422 const OrthancWSI::ImagedVolumeParameters& volume) | |
423 { | |
424 Orthanc::Encoding encoding = Orthanc::FromDcmtkBridge::DetectEncoding(dataset, Orthanc::Encoding_Latin1); | |
425 | |
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426 if (sourceCompression == OrthancWSI::ImageCompression_Jpeg || |
0 | 427 parameters.GetTargetCompression() == OrthancWSI::ImageCompression_Jpeg) |
428 { | |
429 // Takes as estimation a 1:10 compression ratio | |
430 OrthancWSI::DicomToolbox::SetStringTag(dataset, DCM_LossyImageCompression, "01"); | |
431 OrthancWSI::DicomToolbox::SetStringTag(dataset, DCM_LossyImageCompressionRatio, "10"); | |
432 OrthancWSI::DicomToolbox::SetStringTag(dataset, DCM_LossyImageCompressionMethod, "ISO_10918_1"); // JPEG Lossy Compression | |
433 } | |
434 else | |
435 { | |
436 OrthancWSI::DicomToolbox::SetStringTag(dataset, DCM_LossyImageCompression, "00"); | |
437 } | |
438 | |
439 OrthancWSI::DicomToolbox::SetStringTag(dataset, DCM_ImagedVolumeWidth, boost::lexical_cast<std::string>(volume.GetWidth())); | |
440 OrthancWSI::DicomToolbox::SetStringTag(dataset, DCM_ImagedVolumeHeight, boost::lexical_cast<std::string>(volume.GetHeight())); | |
441 OrthancWSI::DicomToolbox::SetStringTag(dataset, DCM_ImagedVolumeDepth, boost::lexical_cast<std::string>(volume.GetDepth())); | |
442 | |
443 std::auto_ptr<DcmItem> origin(new DcmItem); | |
444 OrthancWSI::DicomToolbox::SetStringTag(*origin, DCM_XOffsetInSlideCoordinateSystem, | |
445 boost::lexical_cast<std::string>(volume.GetOffsetX())); | |
446 OrthancWSI::DicomToolbox::SetStringTag(*origin, DCM_YOffsetInSlideCoordinateSystem, | |
447 boost::lexical_cast<std::string>(volume.GetOffsetY())); | |
448 | |
449 std::auto_ptr<DcmSequenceOfItems> sequenceOrigin(new DcmSequenceOfItems(DCM_TotalPixelMatrixOriginSequence)); | |
450 if (!sequenceOrigin->insert(origin.release(), false, false).good() || | |
451 !dataset.insert(sequenceOrigin.release(), false, false).good()) | |
452 { | |
453 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
454 } | |
455 | |
456 | |
457 if (parameters.GetOpticalPath() == OrthancWSI::OpticalPath_Brightfield) | |
458 { | |
459 if (dataset.tagExists(DCM_OpticalPathSequence)) | |
460 { | |
461 LOG(ERROR) << "The user DICOM dataset already contains an optical path sequence, giving up"; | |
462 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); | |
463 } | |
464 | |
465 std::string brightfield; | |
466 Orthanc::EmbeddedResources::GetFileResource(brightfield, Orthanc::EmbeddedResources::BRIGHTFIELD_OPTICAL_PATH); | |
467 | |
468 Json::Value json; | |
469 Json::Reader reader; | |
470 if (!reader.parse(brightfield, json, false)) | |
471 { | |
472 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
473 } | |
474 | |
475 std::auto_ptr<DcmElement> element(Orthanc::FromDcmtkBridge::FromJson( | |
476 Orthanc::DicomTag(DCM_OpticalPathSequence.getGroup(), | |
477 DCM_OpticalPathSequence.getElement()), | |
478 json, false, encoding)); | |
479 if (!dataset.insert(element.release()).good()) | |
480 { | |
481 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
482 } | |
483 } | |
484 | |
485 | |
486 std::string profile; | |
487 if (parameters.GetIccProfilePath().empty()) | |
488 { | |
489 Orthanc::EmbeddedResources::GetFileResource(profile, Orthanc::EmbeddedResources::SRGB_ICC_PROFILE); | |
490 } | |
491 else | |
492 { | |
43 | 493 Orthanc::SystemToolbox::ReadFile(profile, parameters.GetIccProfilePath()); |
0 | 494 } |
495 | |
496 | |
497 DcmItem* opticalPath = OrthancWSI::DicomToolbox::ExtractSingleSequenceItem(dataset, DCM_OpticalPathSequence); | |
498 if (opticalPath == NULL) | |
499 { | |
500 LOG(ERROR) << "No optical path specified"; | |
501 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); | |
502 } | |
503 | |
504 if (!opticalPath->tagExists(DCM_ICCProfile)) | |
505 { | |
506 std::auto_ptr<DcmOtherByteOtherWord> icc(new DcmOtherByteOtherWord(DCM_ICCProfile)); | |
507 | |
508 if (!icc->putUint8Array(reinterpret_cast<const Uint8*>(profile.c_str()), profile.size()).good() || | |
509 !opticalPath->insert(icc.release()).good()) | |
510 { | |
511 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
512 } | |
513 } | |
514 | |
515 const char* opticalPathId = NULL; | |
516 if (!opticalPath->findAndGetString(DCM_OpticalPathIdentifier, opticalPathId).good() || | |
517 opticalPathId == NULL) | |
518 { | |
519 LOG(ERROR) << "No identifier in the optical path"; | |
520 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); | |
521 } | |
522 | |
523 SetupDimension(dataset, opticalPathId, source, volume); | |
524 } | |
525 | |
526 | |
527 static bool ParseParameters(int& exitStatus, | |
528 OrthancWSI::DicomizerParameters& parameters, | |
529 OrthancWSI::ImagedVolumeParameters& volume, | |
530 int argc, | |
531 char* argv[]) | |
532 { | |
533 // Declare the supported parameters | |
534 boost::program_options::options_description generic("Generic options"); | |
535 generic.add_options() | |
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536 (OPTION_HELP, "Display this help and exit") |
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537 (OPTION_VERSION, "Output version information and exit") |
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538 (OPTION_VERBOSE, "Be verbose in logs") |
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539 (OPTION_THREADS, |
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540 boost::program_options::value<int>()->default_value(parameters.GetThreadsCount()), |
0 | 541 "Number of processing threads to be used") |
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542 (OPTION_OPENSLIDE, boost::program_options::value<std::string>(), |
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543 "Path to the shared library of OpenSlide " |
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544 "(not necessary if converting from standard hierarchical TIFF)") |
0 | 545 ; |
546 | |
547 boost::program_options::options_description source("Options for the source image"); | |
548 source.add_options() | |
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549 (OPTION_DATASET, boost::program_options::value<std::string>(), |
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550 "Path to a JSON file containing the DICOM dataset") |
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551 (OPTION_SAMPLE_DATASET, |
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552 "Display a minimalistic sample DICOM dataset in JSON format, then exit") |
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553 (OPTION_REENCODE, boost::program_options::value<bool>(), |
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554 "Whether to re-encode each tile (no transcoding, much slower) (Boolean)") |
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555 (OPTION_REPAINT, boost::program_options::value<bool>(), |
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556 "Whether to repaint the background of the image (Boolean)") |
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557 (OPTION_COLOR, boost::program_options::value<std::string>(), |
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558 "Color of the background (e.g. \"255,0,0\")") |
0 | 559 ; |
560 | |
561 boost::program_options::options_description pyramid("Options to construct the pyramid"); | |
562 pyramid.add_options() | |
129
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563 (OPTION_PYRAMID, boost::program_options::value<bool>()->default_value(false), |
0 | 564 "Reconstruct the full pyramid (slow) (Boolean)") |
129
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565 (OPTION_SMOOTH, boost::program_options::value<bool>()->default_value(false), |
0 | 566 "Apply smoothing when reconstructing the pyramid " |
567 "(slower, but higher quality) (Boolean)") | |
129
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568 (OPTION_LEVELS, boost::program_options::value<int>(), |
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569 "Number of levels in the target pyramid") |
0 | 570 ; |
571 | |
572 boost::program_options::options_description target("Options for the target image"); | |
573 target.add_options() | |
129
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574 (OPTION_TILE_WIDTH, boost::program_options::value<int>(), |
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575 "Width of the tiles in the target image") |
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576 (OPTION_TILE_HEIGHT, boost::program_options::value<int>(), |
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577 "Height of the tiles in the target image") |
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578 (OPTION_COMPRESSION, boost::program_options::value<std::string>(), |
0 | 579 "Compression of the target image (\"none\", \"jpeg\" or \"jpeg2000\")") |
129
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580 (OPTION_JPEG_QUALITY, boost::program_options::value<int>(), |
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581 "Set quality level for JPEG (0..100)") |
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582 (OPTION_MAX_SIZE, boost::program_options::value<int>()->default_value(10), |
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583 "Maximum size per DICOM instance (in MB), 0 means no limit on the file size") |
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584 (OPTION_FOLDER, boost::program_options::value<std::string>(), |
0 | 585 "Folder where to store the output DICOM instances") |
129
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586 (OPTION_FOLDER_PATTERN, |
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587 boost::program_options::value<std::string>()->default_value("wsi-%06d.dcm"), |
0 | 588 "Pattern for the files in the output folder") |
589 ("orthanc", boost::program_options::value<std::string>()->default_value("http://localhost:8042/"), | |
590 "URL to the REST API of the target Orthanc server") | |
591 ; | |
592 | |
593 boost::program_options::options_description volumeOptions("Description of the imaged volume"); | |
594 volumeOptions.add_options() | |
129
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595 (OPTION_IMAGED_WIDTH, boost::program_options::value<float>()->default_value(15), |
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596 "Width of the specimen (in mm)") |
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597 (OPTION_IMAGED_HEIGHT, boost::program_options::value<float>()->default_value(15), |
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598 "Height of the specimen (in mm)") |
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599 (OPTION_IMAGED_DEPTH, boost::program_options::value<float>()->default_value(1), |
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600 "Depth of the specimen (in mm)") |
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601 (OPTION_OFFSET_X, boost::program_options::value<float>()->default_value(20), |
0 | 602 "X offset the specimen, wrt. slide coordinates origin (in mm)") |
129
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603 (OPTION_OFFSET_Y, boost::program_options::value<float>()->default_value(40), |
0 | 604 "Y offset the specimen, wrt. slide coordinates origin (in mm)") |
605 ; | |
606 | |
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607 boost::program_options::options_description restOptions |
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608 ("HTTP/HTTPS client configuration to access the Orthanc REST API"); |
125
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609 OrthancWSI::ApplicationToolbox::AddRestApiOptions(restOptions); |
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610 |
0 | 611 boost::program_options::options_description advancedOptions("Advanced options"); |
612 advancedOptions.add_options() | |
129
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613 (OPTION_OPTICAL_PATH, boost::program_options::value<std::string>()->default_value("brightfield"), |
0 | 614 "Optical path to be automatically added to the DICOM dataset (\"none\" or \"brightfield\")") |
129
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615 (OPTION_ICC_PROFILE, boost::program_options::value<std::string>(), |
0 | 616 "Path to the ICC profile to be included. If empty, a default sRGB profile will be added.") |
129
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617 (OPTION_SAFETY, boost::program_options::value<bool>()->default_value(true), |
0 | 618 "Whether to do additional checks to verify the source image is supported (might slow down) (Boolean)") |
129
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619 (OPTION_LOWER_LEVELS, boost::program_options::value<int>(), |
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620 "Number of pyramid levels up to which multithreading " |
0 | 621 "should be applied (only for performance/memory tuning)") |
622 ; | |
623 | |
624 boost::program_options::options_description hidden; | |
625 hidden.add_options() | |
129
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626 (OPTION_INPUT, boost::program_options::value<std::string>(), |
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627 "Input file"); |
0 | 628 ; |
629 | |
630 boost::program_options::options_description allWithoutHidden; | |
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631 allWithoutHidden |
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632 .add(generic) |
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633 .add(source) |
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634 .add(pyramid) |
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635 .add(target) |
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636 .add(volumeOptions) |
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637 .add(restOptions) |
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638 .add(advancedOptions); |
0 | 639 |
640 boost::program_options::options_description all = allWithoutHidden; | |
641 all.add(hidden); | |
642 | |
643 boost::program_options::positional_options_description positional; | |
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644 positional.add(OPTION_INPUT, 1); |
0 | 645 |
646 boost::program_options::variables_map options; | |
647 bool error = false; | |
648 | |
649 try | |
650 { | |
651 boost::program_options::store(boost::program_options::command_line_parser(argc, argv). | |
652 options(all).positional(positional).run(), options); | |
653 boost::program_options::notify(options); | |
654 } | |
655 catch (boost::program_options::error& e) | |
656 { | |
657 LOG(ERROR) << "Error while parsing the command-line arguments: " << e.what(); | |
658 error = true; | |
659 } | |
660 | |
661 if (!error && | |
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662 options.count(OPTION_SAMPLE_DATASET)) |
0 | 663 { |
664 std::string sample; | |
665 Orthanc::EmbeddedResources::GetFileResource(sample, Orthanc::EmbeddedResources::SAMPLE_DATASET); | |
666 | |
667 std::cout << std::endl << sample << std::endl; | |
668 | |
669 return false; | |
670 } | |
671 | |
672 if (!error && | |
129
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673 options.count(OPTION_HELP) == 0 && |
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674 options.count(OPTION_VERSION) == 0 && |
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675 options.count(OPTION_INPUT) != 1) |
0 | 676 { |
677 LOG(ERROR) << "No input file was specified"; | |
678 error = true; | |
679 } | |
680 | |
129
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681 if (error || options.count(OPTION_HELP)) |
0 | 682 { |
683 std::cout << std::endl | |
684 << "Usage: " << argv[0] << " [OPTION]... [INPUT]" | |
685 << std::endl | |
686 << "Orthanc, lightweight, RESTful DICOM server for healthcare and medical research." | |
687 << std::endl << std::endl | |
688 << "Create a DICOM file from a digital pathology image." | |
689 << std::endl; | |
690 | |
691 std::cout << allWithoutHidden << "\n"; | |
692 | |
693 if (error) | |
694 { | |
695 exitStatus = -1; | |
696 } | |
697 | |
698 return false; | |
699 } | |
700 | |
129
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701 if (options.count(OPTION_VERSION)) |
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702 { |
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703 OrthancWSI::ApplicationToolbox::PrintVersion(argv[0]); |
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704 return false; |
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705 } |
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706 |
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707 if (options.count(OPTION_VERBOSE)) |
0 | 708 { |
709 Orthanc::Logging::EnableInfoLevel(true); | |
710 } | |
711 | |
129
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712 if (options.count(OPTION_OPENSLIDE)) |
0 | 713 { |
129
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714 OrthancWSI::OpenSlideLibrary::Initialize(options[OPTION_OPENSLIDE].as<std::string>()); |
0 | 715 } |
716 | |
129
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717 if (options.count(OPTION_PYRAMID) && |
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718 options[OPTION_PYRAMID].as<bool>()) |
0 | 719 { |
720 parameters.SetReconstructPyramid(true); | |
721 } | |
722 | |
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723 if (options.count(OPTION_SMOOTH) && |
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724 options[OPTION_SMOOTH].as<bool>()) |
0 | 725 { |
726 parameters.SetSmoothEnabled(true); | |
727 } | |
728 | |
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729 if (options.count(OPTION_SAFETY) && |
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730 options[OPTION_SAFETY].as<bool>()) |
0 | 731 { |
732 parameters.SetSafetyCheck(true); | |
733 } | |
734 | |
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735 if (options.count(OPTION_REENCODE) && |
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736 options[OPTION_REENCODE].as<bool>()) |
0 | 737 { |
738 parameters.SetForceReencode(true); | |
739 } | |
740 | |
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741 if (options.count(OPTION_REPAINT) && |
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742 options[OPTION_REPAINT].as<bool>()) |
0 | 743 { |
744 parameters.SetRepaintBackground(true); | |
745 } | |
746 | |
129
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747 if (options.count(OPTION_TILE_WIDTH) || |
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748 options.count(OPTION_TILE_HEIGHT)) |
0 | 749 { |
750 int w = 0; | |
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751 if (options.count(OPTION_TILE_WIDTH)) |
0 | 752 { |
129
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753 w = options[OPTION_TILE_WIDTH].as<int>(); |
0 | 754 } |
755 | |
145 | 756 int h = 0; |
129
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757 if (options.count(OPTION_TILE_HEIGHT)) |
0 | 758 { |
129
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759 h = options[OPTION_TILE_HEIGHT].as<int>(); |
0 | 760 } |
761 | |
762 if (w < 0 || h < 0) | |
763 { | |
764 LOG(ERROR) << "Negative target tile size specified: " << w << "x" << h; | |
765 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); | |
766 } | |
767 | |
768 parameters.SetTargetTileSize(w, h); | |
769 } | |
770 | |
129
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771 parameters.SetInputFile(options[OPTION_INPUT].as<std::string>()); |
0 | 772 |
129
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773 if (options.count(OPTION_COLOR)) |
0 | 774 { |
775 uint8_t r, g, b; | |
129
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776 OrthancWSI::ApplicationToolbox::ParseColor(r, g, b, options[OPTION_COLOR].as<std::string>()); |
0 | 777 parameters.SetBackgroundColor(r, g, b); |
778 } | |
779 | |
129
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780 if (options.count(OPTION_COMPRESSION)) |
0 | 781 { |
129
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782 std::string s = options[OPTION_COMPRESSION].as<std::string>(); |
0 | 783 if (s == "none") |
784 { | |
785 parameters.SetTargetCompression(OrthancWSI::ImageCompression_None); | |
786 } | |
787 else if (s == "jpeg") | |
788 { | |
789 parameters.SetTargetCompression(OrthancWSI::ImageCompression_Jpeg); | |
790 } | |
791 else if (s == "jpeg2000") | |
792 { | |
793 parameters.SetTargetCompression(OrthancWSI::ImageCompression_Jpeg2000); | |
794 } | |
795 else | |
796 { | |
797 LOG(ERROR) << "Unknown image compression for the target image: " << s; | |
798 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); | |
799 } | |
800 } | |
801 | |
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802 if (options.count(OPTION_JPEG_QUALITY)) |
0 | 803 { |
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804 parameters.SetJpegQuality(options[OPTION_JPEG_QUALITY].as<int>()); |
0 | 805 } |
806 | |
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807 if (options.count(OPTION_LEVELS)) |
0 | 808 { |
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809 parameters.SetPyramidLevelsCount(options[OPTION_LEVELS].as<int>()); |
0 | 810 } |
811 | |
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812 if (options.count(OPTION_LOWER_LEVELS)) |
0 | 813 { |
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814 parameters.SetPyramidLowerLevelsCount(options[OPTION_LOWER_LEVELS].as<int>()); |
0 | 815 } |
816 | |
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817 if (options.count(OPTION_THREADS)) |
0 | 818 { |
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819 parameters.SetThreadsCount(options[OPTION_THREADS].as<int>()); |
0 | 820 } |
821 | |
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822 if (options.count(OPTION_MAX_SIZE)) |
0 | 823 { |
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824 parameters.SetDicomMaxFileSize(options[OPTION_MAX_SIZE].as<int>() * 1024 * 1024); |
0 | 825 } |
826 | |
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827 if (options.count(OPTION_FOLDER)) |
0 | 828 { |
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829 parameters.SetTargetFolder(options[OPTION_FOLDER].as<std::string>()); |
0 | 830 } |
831 | |
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832 if (options.count(OPTION_FOLDER_PATTERN)) |
0 | 833 { |
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834 parameters.SetTargetFolderPattern(options[OPTION_FOLDER_PATTERN].as<std::string>()); |
0 | 835 } |
836 | |
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837 OrthancWSI::ApplicationToolbox::SetupRestApi(parameters.GetOrthancParameters(), options); |
0 | 838 |
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839 if (options.count(OPTION_DATASET)) |
0 | 840 { |
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841 parameters.SetDatasetPath(options[OPTION_DATASET].as<std::string>()); |
0 | 842 } |
843 | |
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844 if (options.count(OPTION_IMAGED_WIDTH)) |
0 | 845 { |
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846 volume.SetWidth(options[OPTION_IMAGED_WIDTH].as<float>()); |
0 | 847 } |
848 | |
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849 if (options.count(OPTION_IMAGED_HEIGHT)) |
0 | 850 { |
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851 volume.SetHeight(options[OPTION_IMAGED_HEIGHT].as<float>()); |
0 | 852 } |
853 | |
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854 if (options.count(OPTION_IMAGED_DEPTH)) |
0 | 855 { |
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856 volume.SetDepth(options[OPTION_IMAGED_DEPTH].as<float>()); |
0 | 857 } |
858 | |
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859 if (options.count(OPTION_OFFSET_X)) |
0 | 860 { |
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861 volume.SetOffsetX(options[OPTION_OFFSET_X].as<float>()); |
0 | 862 } |
863 | |
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864 if (options.count(OPTION_OFFSET_Y)) |
0 | 865 { |
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866 volume.SetOffsetY(options[OPTION_OFFSET_Y].as<float>()); |
0 | 867 } |
868 | |
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869 if (options.count(OPTION_OPTICAL_PATH)) |
0 | 870 { |
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871 std::string s = options[OPTION_OPTICAL_PATH].as<std::string>(); |
0 | 872 if (s == "none") |
873 { | |
874 parameters.SetOpticalPath(OrthancWSI::OpticalPath_None); | |
875 } | |
876 else if (s == "brightfield") | |
877 { | |
878 parameters.SetOpticalPath(OrthancWSI::OpticalPath_Brightfield); | |
879 } | |
880 else | |
881 { | |
882 LOG(ERROR) << "Unknown optical path definition: " << s; | |
883 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); | |
884 } | |
885 } | |
886 | |
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887 if (options.count(OPTION_ICC_PROFILE)) |
0 | 888 { |
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889 parameters.SetIccProfilePath(options[OPTION_ICC_PROFILE].as<std::string>()); |
0 | 890 } |
891 | |
892 return true; | |
893 } | |
894 | |
895 | |
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896 |
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897 OrthancWSI::ITiledPyramid* OpenInputPyramid(OrthancWSI::ImageCompression& sourceCompression, |
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898 const std::string& path, |
0 | 899 const OrthancWSI::DicomizerParameters& parameters) |
900 { | |
901 LOG(WARNING) << "The input image is: " << path; | |
902 | |
903 OrthancWSI::ImageCompression format = OrthancWSI::DetectFormatFromFile(path); | |
904 LOG(WARNING) << "File format of the input image: " << EnumerationToString(format); | |
905 | |
906 switch (format) | |
907 { | |
908 case OrthancWSI::ImageCompression_Png: | |
57
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909 { |
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910 sourceCompression = OrthancWSI::ImageCompression_Unknown; |
0 | 911 return new OrthancWSI::TiledPngImage(path, |
912 parameters.GetTargetTileWidth(512), | |
913 parameters.GetTargetTileHeight(512)); | |
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914 } |
0 | 915 |
916 case OrthancWSI::ImageCompression_Jpeg: | |
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917 { |
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918 sourceCompression = OrthancWSI::ImageCompression_Unknown; |
0 | 919 return new OrthancWSI::TiledJpegImage(path, |
920 parameters.GetTargetTileWidth(512), | |
921 parameters.GetTargetTileHeight(512)); | |
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922 } |
0 | 923 |
924 case OrthancWSI::ImageCompression_Tiff: | |
925 { | |
926 try | |
927 { | |
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928 std::auto_ptr<OrthancWSI::HierarchicalTiff> tiff(new OrthancWSI::HierarchicalTiff(path)); |
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929 sourceCompression = tiff->GetImageCompression(); |
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930 return tiff.release(); |
0 | 931 } |
932 catch (Orthanc::OrthancException&) | |
933 { | |
934 LOG(WARNING) << "This is not a standard hierarchical TIFF file"; | |
935 } | |
936 } | |
937 | |
938 default: | |
939 break; | |
940 } | |
941 | |
942 try | |
943 { | |
944 LOG(WARNING) << "Trying to open the input pyramid with OpenSlide"; | |
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945 sourceCompression = OrthancWSI::ImageCompression_Unknown; |
0 | 946 return new OrthancWSI::OpenSlidePyramid(path, |
947 parameters.GetTargetTileWidth(512), | |
948 parameters.GetTargetTileHeight(512)); | |
949 } | |
950 catch (Orthanc::OrthancException&) | |
951 { | |
952 LOG(ERROR) << "This file is not supported by OpenSlide"; | |
953 return NULL; | |
954 } | |
955 } | |
956 | |
957 | |
958 int main(int argc, char* argv[]) | |
959 { | |
960 OrthancWSI::ApplicationToolbox::GlobalInitialize(); | |
93
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961 OrthancWSI::ApplicationToolbox::ShowVersionInLog(argv[0]); |
0 | 962 |
963 int exitStatus = 0; | |
964 | |
965 try | |
966 { | |
967 OrthancWSI::DicomizerParameters parameters; | |
968 OrthancWSI::ImagedVolumeParameters volume; | |
969 | |
970 if (ParseParameters(exitStatus, parameters, volume, argc, argv)) | |
971 { | |
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972 OrthancWSI::ImageCompression sourceCompression; |
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973 std::auto_ptr<OrthancWSI::ITiledPyramid> source; |
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974 |
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975 source.reset(OpenInputPyramid(sourceCompression, parameters.GetInputFile(), parameters)); |
0 | 976 if (source.get() == NULL) |
977 { | |
978 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat); | |
979 } | |
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980 |
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981 LOG(WARNING) << "Compression of the individual source tiles: " << OrthancWSI::EnumerationToString(sourceCompression); |
0 | 982 |
983 // Create the shared DICOM tags | |
984 std::auto_ptr<DcmDataset> dataset(ParseDataset(parameters.GetDatasetPath())); | |
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985 EnrichDataset(*dataset, *source, sourceCompression, parameters, volume); |
0 | 986 |
987 std::auto_ptr<OrthancWSI::IFileTarget> output(parameters.CreateTarget()); | |
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988 Recompress(*output, *source, *dataset, parameters, volume, sourceCompression); |
0 | 989 } |
990 } | |
991 catch (Orthanc::OrthancException& e) | |
992 { | |
993 LOG(ERROR) << "Terminating on exception: " << e.What(); | |
994 exitStatus = -1; | |
995 } | |
996 | |
997 OrthancWSI::ApplicationToolbox::GlobalFinalize(); | |
998 | |
999 return exitStatus; | |
1000 } |