annotate Framework/Inputs/DicomPyramidLevel.cpp @ 68:c619c8bd72ed

DicomPyramidInstance::Deserialize
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 25 Nov 2016 21:18:46 +0100
parents 147bd6dc28db
children ff0ef01c332c
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 * This program is free software: you can redistribute it and/or
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * modify it under the terms of the GNU Affero General Public License
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * as published by the Free Software Foundation, either version 3 of
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * the License, or (at your option) any later version.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * This program is distributed in the hope that it will be useful, but
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * WITHOUT ANY WARRANTY; without even the implied warranty of
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * Affero General Public License for more details.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * You should have received a copy of the GNU Affero General Public License
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * along with this program. If not, see <http://www.gnu.org/licenses/>.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 **/
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20
16
7a88c614be04 preparing for precompiled headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
21 #include "../PrecompiledHeadersWSI.h"
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 #include "DicomPyramidLevel.h"
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
59
7a3853d51c45 Move "Framework/Orthanc/" as "Resources/Orthanc/"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
24 #include "../../Resources/Orthanc/Core/Logging.h"
7a3853d51c45 Move "Framework/Orthanc/" as "Resources/Orthanc/"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
25 #include "../../Resources/Orthanc/Core/OrthancException.h"
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 #include <boost/lexical_cast.hpp>
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 namespace OrthancWSI
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 {
55
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
31 DicomPyramidLevel::TileContent& DicomPyramidLevel::GetTileContent(unsigned int tileX,
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
32 unsigned int tileY)
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
33 {
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
34 if (tileX >= countTilesX_ ||
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
35 tileY >= countTilesY_)
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
36 {
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
37 LOG(ERROR) << "Tile location (" << tileX << "," << tileY << ") is outside the image";
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
38 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
39 }
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
40
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
41 return tiles_[tileY * countTilesX_ + tileX];
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
42 }
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
43
56
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 55
diff changeset
44 void DicomPyramidLevel::RegisterFrame(DicomPyramidInstance& instance,
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 unsigned int frame)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 {
55
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
47 unsigned int tileX = instance.GetFrameLocationX(frame);
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
48 unsigned int tileY = instance.GetFrameLocationY(frame);
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
49 TileContent& tile = GetTileContent(tileX, tileY);
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50
55
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
51 if (tile.instance_ != NULL)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 {
55
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
53 LOG(ERROR) << "Tile with location (" << tileX << ","
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
54 << tileY << ") is indexed twice in level of size "
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 << totalWidth_ << "x" << totalHeight_;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58
55
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
59 tile.instance_ = &instance;
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
60 tile.frame_ = frame;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64 bool DicomPyramidLevel::LookupTile(TileContent& tile,
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 unsigned int tileX,
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 unsigned int tileY) const
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 {
55
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
68 const TileContent& tmp = const_cast<DicomPyramidLevel&>(*this).GetTileContent(tileX, tileY);
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
69
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
70 if (tmp.instance_ == NULL)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 return false;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 else
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75 {
55
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
76 tile = tmp;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 return true;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81
56
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 55
diff changeset
82 DicomPyramidLevel::DicomPyramidLevel(DicomPyramidInstance& instance) :
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83 totalWidth_(instance.GetTotalWidth()),
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84 totalHeight_(instance.GetTotalHeight()),
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
85 tileWidth_(instance.GetTileWidth()),
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
86 tileHeight_(instance.GetTileHeight())
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88 if (totalWidth_ == 0 ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89 totalHeight_ == 0)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
92 }
55
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
93
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
94 countTilesX_ = CeilingDivision(totalWidth_, tileWidth_);
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
95 countTilesY_ = CeilingDivision(totalHeight_, tileHeight_);
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
96 tiles_.resize(countTilesX_ * countTilesY_);
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98 AddInstance(instance);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
100
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
101
56
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 55
diff changeset
102 void DicomPyramidLevel::AddInstance(DicomPyramidInstance& instance)
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
103 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104 if (instance.GetTotalWidth() != totalWidth_ ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105 instance.GetTotalHeight() != totalHeight_ ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106 instance.GetTileWidth() != tileWidth_ ||
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107 instance.GetTileHeight() != tileHeight_)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
108 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
109 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageSize);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112 for (size_t frame = 0; frame < instance.GetFrameCount(); frame++)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114 RegisterFrame(instance, frame);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
115 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
117
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
118
57
91fc9583b2de big refactoring to support sparse tiling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
119 bool DicomPyramidLevel::DownloadRawTile(std::string& raw /* out */,
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
120 Orthanc::PixelFormat& format /* out */,
57
91fc9583b2de big refactoring to support sparse tiling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
121 ImageCompression& compression /* out */,
61
147bd6dc28db refactoring using new items in the plugin toolbox of Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
122 OrthancPlugins::IOrthancConnection& orthanc,
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
123 unsigned int tileX,
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
124 unsigned int tileY) const
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
125 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
126 TileContent tile;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
127 if (LookupTile(tile, tileX, tileY))
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
128 {
55
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
129 assert(tile.instance_ != NULL);
56
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 55
diff changeset
130 DicomPyramidInstance& instance = *tile.instance_;
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
131
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
132 std::string uri = ("/instances/" + instance.GetInstanceId() +
55
b6432a00b103 use of simpler data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 16
diff changeset
133 "/frames/" + boost::lexical_cast<std::string>(tile.frame_) + "/raw");
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
134
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
135 orthanc.RestApiGet(raw, uri);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
136
56
83cd735c885d speedup the loading of DICOM sources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 55
diff changeset
137 compression = instance.GetImageCompression(orthanc);
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
138 format = instance.GetPixelFormat();
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
139
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
140 return true;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
141 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
142 else
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
143 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
144 return false;
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
145 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
146 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
147 }