annotate Framework/Inputs/SingleLevelDecodedPyramid.cpp @ 328:a57a107b9547

add warning about Leica images
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 18 Oct 2024 08:43:15 +0200
parents 4e25eb77cd1d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
312
0683312e21ba updated copyright, as Orthanc Team now replaces Osimis
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 309
diff changeset
5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
0683312e21ba updated copyright, as Orthanc Team now replaces Osimis
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 309
diff changeset
6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
309
7020852a8fa9 updated year to 2024
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 254
diff changeset
7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * This program is free software: you can redistribute it and/or
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * modify it under the terms of the GNU Affero General Public License
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * as published by the Free Software Foundation, either version 3 of
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * the License, or (at your option) any later version.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * This program is distributed in the hope that it will be useful, but
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * WITHOUT ANY WARRANTY; without even the implied warranty of
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * Affero General Public License for more details.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 *
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 * You should have received a copy of the GNU Affero General Public License
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 * along with this program. If not, see <http://www.gnu.org/licenses/>.
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 **/
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
16
7a88c614be04 preparing for precompiled headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
24 #include "../PrecompiledHeadersWSI.h"
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 #include "SingleLevelDecodedPyramid.h"
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 #include "../ImageToolbox.h"
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27
192
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 175
diff changeset
28 #include <OrthancException.h>
228
c6e7dda9ac14 more reuse of Orthanc::ImageProcessing() toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
29 #include <Images/ImageProcessing.h>
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 namespace OrthancWSI
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 void SingleLevelDecodedPyramid::ReadRegion(Orthanc::ImageAccessor& target,
318
8ad12abde290 sparse re-encoding with OpenSlide (notably for MIRAX format)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
34 bool& isEmpty,
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 unsigned int level,
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 unsigned int x,
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 unsigned int y)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 {
318
8ad12abde290 sparse re-encoding with OpenSlide (notably for MIRAX format)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
39 isEmpty = false;
8ad12abde290 sparse re-encoding with OpenSlide (notably for MIRAX format)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 312
diff changeset
40
327
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
41 if (x + target.GetWidth() <= image_.GetWidth() &&
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
42 y + target.GetHeight() <= image_.GetHeight())
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
43 {
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
44 Orthanc::ImageAccessor region;
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
45 image_.GetRegion(region, x, y, target.GetWidth(), target.GetHeight());
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
46 Orthanc::ImageProcessing::Copy(target, region);
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
47 }
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
48 else
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
49 {
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
50 Orthanc::ImageProcessing::Set(target, backgroundRed_, backgroundGreen_, backgroundBlue_, 255);
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
51
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
52 if (x < image_.GetWidth() &&
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
53 y < image_.GetHeight())
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
54 {
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
55 unsigned int w = std::min(image_.GetWidth() - x, target.GetWidth());
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
56 unsigned int h = std::min(image_.GetHeight() - y, target.GetHeight());
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
57
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
58 Orthanc::ImageAccessor a, b;
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
59 image_.GetRegion(a, x, y, w, h);
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
60 target.GetRegion(b, 0, 0, w, h);
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
61
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
62 Orthanc::ImageProcessing::Copy(b, a);
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
63 }
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
64 }
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
65 }
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
66
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
67
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
68 SingleLevelDecodedPyramid::SingleLevelDecodedPyramid(unsigned int tileWidth,
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
69 unsigned int tileHeight) :
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
70 tileWidth_(tileWidth),
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
71 tileHeight_(tileHeight),
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
72 padding_(0),
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
73 backgroundRed_(255),
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
74 backgroundGreen_(255),
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
75 backgroundBlue_(255)
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
76 {
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80 unsigned int SingleLevelDecodedPyramid::GetLevelWidth(unsigned int level) const
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82 if (level != 0)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
85 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
86
327
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
87 if (padding_ <= 1)
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
88 {
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
89 return image_.GetWidth(); // No padding
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
90 }
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
91 else
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
92 {
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
93 return padding_ * CeilingDivision(image_.GetWidth(), padding_);
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
94 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
95 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98 unsigned int SingleLevelDecodedPyramid::GetLevelHeight(unsigned int level) const
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
100 if (level != 0)
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
101 {
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
103 }
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104
327
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
105 if (padding_ <= 1)
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
106 {
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
107 return image_.GetHeight(); // No padding
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
108 }
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
109 else
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
110 {
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
111 return padding_ * CeilingDivision(image_.GetHeight(), padding_);
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
112 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113 }
171
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
114
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
115
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
116 Orthanc::PhotometricInterpretation SingleLevelDecodedPyramid::GetPhotometricInterpretation() const
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
117 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
118 switch (image_.GetFormat())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
119 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
120 case Orthanc::PixelFormat_Grayscale8:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
121 return Orthanc::PhotometricInterpretation_Monochrome2;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
122
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
123 case Orthanc::PixelFormat_RGB24:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
124 return Orthanc::PhotometricInterpretation_RGB;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
125
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
126 default:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
127 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
128 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 157
diff changeset
129 }
326
9947e70cbcea preparing padding of JPEG and PNG
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 318
diff changeset
130
9947e70cbcea preparing padding of JPEG and PNG
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 318
diff changeset
131
327
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
132 void SingleLevelDecodedPyramid::SetPadding(unsigned int padding,
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
133 uint8_t backgroundRed,
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
134 uint8_t backgroundGreen,
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
135 uint8_t backgroundBlue)
326
9947e70cbcea preparing padding of JPEG and PNG
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 318
diff changeset
136 {
327
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
137 padding_ = padding;
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
138 backgroundRed_ = backgroundRed;
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
139 backgroundGreen_ = backgroundGreen;
4e25eb77cd1d implementation of padding for IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 326
diff changeset
140 backgroundBlue_ = backgroundBlue;
326
9947e70cbcea preparing padding of JPEG and PNG
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 318
diff changeset
141 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
142 }