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annotate Framework/DicomizerParameters.cpp @ 311:4315bd3bffa7

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Sat, 06 Apr 2024 17:39:24 +0200
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children 0683312e21ba
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2024 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Affero General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Affero General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Affero General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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22
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23 #include "PrecompiledHeadersWSI.h"
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24 #include "DicomizerParameters.h"
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26 #include "ImageToolbox.h"
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27 #include "Targets/FolderTarget.h"
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28 #include "Targets/OrthancTarget.h"
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30 #include <OrthancException.h>
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31
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32 #include <boost/thread.hpp>
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33 #include <boost/lexical_cast.hpp>
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34
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35 namespace OrthancWSI
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36 {
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37 static unsigned int ChooseNumberOfThreads()
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38 {
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39 unsigned int nthreads = boost::thread::hardware_concurrency();
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40
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41 if (nthreads % 2 == 0)
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42 {
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43 nthreads = nthreads / 2;
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44 }
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45 else
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46 {
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47 nthreads = nthreads / 2 + 1;
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48 }
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49
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50 if (nthreads == 0)
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51 {
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52 nthreads = 1;
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53 }
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54
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55 return nthreads;
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56 }
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57
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58
91
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59 DicomizerParameters::DicomizerParameters() :
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60 safetyCheck_(false),
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61 repaintBackground_(false),
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62 targetCompression_(ImageCompression_Jpeg),
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63 hasTargetTileSize_(false),
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64 targetTileWidth_(512),
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65 targetTileHeight_(512),
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66 maxDicomFileSize_(10 * 1024 * 1024), // 10MB
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67 reconstructPyramid_(false),
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68 pyramidLevelsCount_(0),
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69 pyramidLowerLevelsCount_(0),
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70 smooth_(false),
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71 jpegQuality_(90),
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72 forceReencode_(false),
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73 opticalPath_(OpticalPath_Brightfield),
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74 isCytomineSource_(false),
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75 cytomineImageInstanceId_(-1),
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76 cytomineCompression_(ImageCompression_Png),
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77 tiffAlignment_(1)
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78 {
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79 backgroundColor_[0] = 255;
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80 backgroundColor_[1] = 255;
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81 backgroundColor_[2] = 255;
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82 threadsCount_ = ChooseNumberOfThreads();
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83 }
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84
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85
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86 void DicomizerParameters::SetBackgroundColor(uint8_t red,
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87 uint8_t green,
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88 uint8_t blue)
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89 {
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90 repaintBackground_ = true;
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91 backgroundColor_[0] = red;
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92 backgroundColor_[1] = green;
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93 backgroundColor_[2] = blue;
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94 }
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95
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96
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97 void DicomizerParameters::SetTargetTileSize(unsigned int width,
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98 unsigned int height)
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99 {
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100 hasTargetTileSize_ = true;
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101 targetTileWidth_ = width;
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102 targetTileHeight_ = height;
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103 }
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104
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105
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106 unsigned int DicomizerParameters::GetTargetTileWidth(unsigned int defaultWidth) const
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107 {
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108 if (hasTargetTileSize_ &&
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109 targetTileWidth_ != 0)
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110 {
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111 return targetTileWidth_;
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112 }
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113 else
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114 {
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115 return defaultWidth;
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116 }
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117 }
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118
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119
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120 unsigned int DicomizerParameters::GetTargetTileWidth(const ITiledPyramid& source) const
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121 {
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122 ImageToolbox::CheckConstantTileSize(source);
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123 return GetTargetTileWidth(source.GetTileWidth(0));
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124 }
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125
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126
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127 unsigned int DicomizerParameters::GetTargetTileHeight(unsigned int defaultHeight) const
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128 {
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129 if (hasTargetTileSize_ &&
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130 targetTileHeight_ != 0)
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131 {
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132 return targetTileHeight_;
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133 }
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134 else
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135 {
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136 return defaultHeight;
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137 }
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138 }
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139
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140
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141 unsigned int DicomizerParameters::GetTargetTileHeight(const ITiledPyramid& source) const
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142 {
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143 ImageToolbox::CheckConstantTileSize(source);
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144 return GetTargetTileHeight(source.GetTileHeight(0));
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145 }
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146
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147
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148 void DicomizerParameters::SetThreadsCount(unsigned int threads)
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149 {
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150 if (threads == 0)
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151 {
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152 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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153 }
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154
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155 threadsCount_ = threads;
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156 }
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157
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158
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159 void DicomizerParameters::SetDicomMaxFileSize(unsigned int size)
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160 {
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161 maxDicomFileSize_ = size;
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162 }
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163
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164
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165 void DicomizerParameters::SetPyramidLevelsCount(unsigned int count)
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166 {
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167 if (count == 0)
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168 {
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169 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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170 }
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171
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172 pyramidLevelsCount_ = count;
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173 }
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174
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175
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176 unsigned int DicomizerParameters::GetPyramidLevelsCount(const IPyramidWriter& target,
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177 const ITiledPyramid& source) const
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178 {
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179 if (pyramidLevelsCount_ != 0)
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180 {
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181 return pyramidLevelsCount_;
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182 }
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183
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184 ImageToolbox::CheckConstantTileSize(source);
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185
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186 // By default, the number of levels for the pyramid is taken so that
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187 // the upper level is reduced either to 1 column of tiles, or to 1
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188 // row of tiles.
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189 unsigned int totalWidth = source.GetLevelWidth(0);
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190 unsigned int totalHeight = source.GetLevelHeight(0);
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191
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192 unsigned int countLevels = 1;
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193 for (;;)
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194 {
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195 unsigned int zoom = 1 << (countLevels - 1);
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196
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197 if (CeilingDivision(totalWidth, zoom) <= target.GetTileWidth() ||
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198 CeilingDivision(totalHeight, zoom) <= target.GetTileHeight())
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199 {
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200 break;
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201 }
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202
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203 countLevels += 1;
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204 }
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205
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206 return countLevels;
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207 }
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208
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209
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210 void DicomizerParameters::SetPyramidLowerLevelsCount(unsigned int count)
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211 {
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212 if (count == 0)
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213 {
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214 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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215 }
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216
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217 pyramidLowerLevelsCount_ = count;
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218 }
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219
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220
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221 unsigned int DicomizerParameters::GetPyramidLowerLevelsCount(const IPyramidWriter& target,
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222 const ITiledPyramid& source) const
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223 {
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224 if (pyramidLowerLevelsCount_ != 0)
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225 {
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226 return pyramidLowerLevelsCount_;
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227 }
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228
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229 unsigned int fullNumberOfTiles = (
217
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230 CeilingDivision(source.GetLevelWidth(0), source.GetTileWidth(0)) *
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231 CeilingDivision(source.GetLevelHeight(0), source.GetTileHeight(0)));
0
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232
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233 // By default, the number of lower levels in the pyramid is chosen
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234 // as a compromise between the number of tasks (there should not be
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235 // too few tasks, otherwise multithreading would not be efficient)
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236 // and memory consumption (maximum 64MB of RAM due to the decoding
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237 // of the tiles of the source image per thread: cf. PyramidReader).
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238 unsigned int result = 1;
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239 for (;;)
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240 {
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241 unsigned int zoom = 1 << (result - 1);
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242 unsigned int numberOfTiles = CeilingDivision(fullNumberOfTiles, zoom * zoom);
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243
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244 if (result + 1 > target.GetLevelCount() ||
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245 numberOfTiles < 4 * GetThreadsCount() ||
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246 zoom * target.GetTileWidth() > 4096 ||
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247 zoom * target.GetTileHeight() > 4096)
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248 {
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249 break;
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250 }
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251
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252 result += 1;
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253 }
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254
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255 return result - 1;
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256 }
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257
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258
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259 void DicomizerParameters::SetJpegQuality(int quality)
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260 {
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261 if (quality <= 0 ||
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262 quality > 100)
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263 {
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264 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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265 }
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266
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267 jpegQuality_ = quality;
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268 }
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269
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270
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271 IFileTarget* DicomizerParameters::CreateTarget() const
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272 {
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273 if (folder_.empty() ||
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274 folderPattern_.empty())
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275 {
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276 return new OrthancTarget(orthanc_);
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277 }
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278 else
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279 {
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280 return new FolderTarget(folder_ + "/" + folderPattern_);
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281 }
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282 }
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283
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284
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285 void DicomizerParameters::SetCytomineSource(const std::string& url,
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286 const std::string& publicKey,
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287 const std::string& privateKey,
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288 int imageInstanceId,
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289 ImageCompression cytomineCompression)
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290 {
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291 isCytomineSource_ = true;
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292 cytomineServer_.SetUrl(url);
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293 cytominePublicKey_ = publicKey;
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294 cytominePrivateKey_ = privateKey;
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295 cytomineImageInstanceId_ = imageInstanceId;
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296 cytomineCompression_ = cytomineCompression;
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297 }
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298
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299
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300 const Orthanc::WebServiceParameters& DicomizerParameters::GetCytomineServer() const
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301 {
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302 if (isCytomineSource_)
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303 {
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304 return cytomineServer_;
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305 }
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306 else
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307 {
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308 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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309 }
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310 }
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311
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312
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313 const std::string& DicomizerParameters::GetCytominePublicKey() const
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314 {
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315 if (isCytomineSource_)
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316 {
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317 return cytominePublicKey_;
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318 }
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319 else
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320 {
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321 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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322 }
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323 }
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324
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325
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326 const std::string& DicomizerParameters::GetCytominePrivateKey() const
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327 {
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328 if (isCytomineSource_)
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329 {
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330 return cytominePrivateKey_;
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331 }
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332 else
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333 {
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334 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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335 }
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diff changeset
336 }
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337
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338
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339 int DicomizerParameters::GetCytomineImageInstanceId() const
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340 {
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341 if (isCytomineSource_)
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342 {
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343 return cytomineImageInstanceId_;
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344 }
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345 else
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346 {
4273518c2009 OrthancWSIDicomizer: Support importing of images from Cytomine
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347 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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diff changeset
348 }
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diff changeset
349 }
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diff changeset
350
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diff changeset
351
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352 ImageCompression DicomizerParameters::GetCytomineCompression() const
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diff changeset
353 {
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diff changeset
354 if (isCytomineSource_)
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diff changeset
355 {
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356 return cytomineCompression_;
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diff changeset
357 }
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diff changeset
358 else
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diff changeset
359 {
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diff changeset
360 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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diff changeset
361 }
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diff changeset
362 }
298
fa734a851551 New option: "tiff-alignment" to control deep zoom of plain TIFF over IIIF
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diff changeset
363
fa734a851551 New option: "tiff-alignment" to control deep zoom of plain TIFF over IIIF
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diff changeset
364
fa734a851551 New option: "tiff-alignment" to control deep zoom of plain TIFF over IIIF
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365 void DicomizerParameters::SetTiffAlignment(unsigned int alignment)
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diff changeset
366 {
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diff changeset
367 if (alignment <= 0)
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diff changeset
368 {
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diff changeset
369 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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diff changeset
370 }
fa734a851551 New option: "tiff-alignment" to control deep zoom of plain TIFF over IIIF
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diff changeset
371 else
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parents: 254
diff changeset
372 {
fa734a851551 New option: "tiff-alignment" to control deep zoom of plain TIFF over IIIF
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diff changeset
373 tiffAlignment_ = alignment;
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diff changeset
374 }
fa734a851551 New option: "tiff-alignment" to control deep zoom of plain TIFF over IIIF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 254
diff changeset
375 }
0
4a7a53257c7d initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376 }