Mercurial > hg > orthanc-transfers
annotate Framework/DownloadArea.cpp @ 72:d60d1a3a7357 OrthancTransfers-1.4
fix md5
| author | Alain Mazy <am@osimis.io> |
|---|---|
| date | Tue, 26 Mar 2024 10:16:15 +0100 |
| parents | 1256194e1c08 |
| children | 1e396fb509ca |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 2 * Transfers accelerator plugin for Orthanc | |
|
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44a0430d7899
upgrade to year 2021
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
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3 * Copyright (C) 2018-2021 Osimis S.A., Belgium |
| 0 | 4 * |
| 5 * This program is free software: you can redistribute it and/or | |
| 6 * modify it under the terms of the GNU Affero General Public License | |
| 7 * as published by the Free Software Foundation, either version 3 of | |
| 8 * the License, or (at your option) any later version. | |
| 9 * | |
| 10 * This program is distributed in the hope that it will be useful, but | |
| 11 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 13 * Affero General Public License for more details. | |
| 14 * | |
| 15 * You should have received a copy of the GNU Affero General Public License | |
| 16 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 17 **/ | |
| 18 | |
| 19 | |
| 20 #include "DownloadArea.h" | |
| 21 | |
| 22 | 22 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h" |
| 23 | |
| 20 | 24 #include <Compression/GzipCompressor.h> |
| 25 #include <Logging.h> | |
| 26 #include <SystemToolbox.h> | |
| 0 | 27 |
| 28 #include <boost/filesystem.hpp> | |
| 29 #include <boost/filesystem/fstream.hpp> | |
| 30 | |
| 31 namespace OrthancPlugins | |
| 32 { | |
| 33 class DownloadArea::Instance::Writer : public boost::noncopyable | |
| 34 { | |
| 35 private: | |
| 36 boost::filesystem::ofstream stream_; | |
| 37 | |
| 38 public: | |
| 39 Writer(Orthanc::TemporaryFile& f, | |
| 40 bool create) | |
| 41 { | |
| 42 if (create) | |
| 43 { | |
| 44 // Create the file. | |
| 45 stream_.open(f.GetPath(), std::ofstream::out | std::ofstream::binary); | |
| 46 } | |
| 47 else | |
| 48 { | |
| 49 // Open the existing file to modify it. The "in" mode is | |
| 50 // necessary, otherwise previous content is lost by | |
| 51 // truncation (as an ofstream defaults to std::ios::trunc, | |
| 52 // the flag to truncate the existing content). | |
| 53 stream_.open(f.GetPath(), std::ofstream::in | std::ofstream::out | std::ofstream::binary); | |
| 54 } | |
| 55 | |
| 56 if (!stream_.good()) | |
| 57 { | |
|
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sync orthanc + sdk 1.5.0 + added more info in error logs
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58 throw Orthanc::OrthancException(Orthanc::ErrorCode_CannotWriteFile, std::string("Unable to write to ") + f.GetPath()); |
| 0 | 59 } |
| 60 } | |
| 61 | |
| 62 void Write(size_t offset, | |
| 63 const void* data, | |
| 64 size_t size) | |
| 65 { | |
| 66 stream_.seekp(offset); | |
| 67 stream_.write(reinterpret_cast<const char*>(data), size); | |
| 68 } | |
| 69 }; | |
| 70 | |
| 71 | |
| 72 DownloadArea::Instance::Instance(const DicomInstanceInfo& info) : | |
| 73 info_(info) | |
| 74 { | |
| 75 Writer writer(file_, true); | |
| 76 | |
| 77 // Create a sparse file of expected size | |
| 78 if (info_.GetSize() != 0) | |
| 79 { | |
| 80 writer.Write(info_.GetSize() - 1, "", 1); | |
| 81 } | |
| 82 } | |
| 83 | |
| 84 | |
| 85 void DownloadArea::Instance::WriteChunk(size_t offset, | |
| 86 const void* data, | |
| 87 size_t size) | |
| 88 { | |
| 89 if (offset + size > info_.GetSize()) | |
| 90 { | |
|
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sync orthanc + sdk 1.5.0 + added more info in error logs
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
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91 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange, "WriteChunk out of bounds"); |
| 0 | 92 } |
| 93 else if (size > 0) | |
| 94 { | |
| 95 Writer writer(file_, false); | |
| 96 writer.Write(offset, data, size); | |
| 97 } | |
| 98 } | |
| 99 | |
| 100 | |
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101 void DownloadArea::Instance::Commit(bool simulate) const |
| 0 | 102 { |
| 103 std::string content; | |
| 104 Orthanc::SystemToolbox::ReadFile(content, file_.GetPath()); | |
| 105 | |
| 106 std::string md5; | |
| 107 Orthanc::Toolbox::ComputeMD5(md5, content); | |
| 108 | |
| 109 if (md5 == info_.GetMD5()) | |
| 110 { | |
| 111 if (!simulate) | |
| 112 { | |
| 113 Json::Value result; | |
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114 if (!RestApiPost(result, "/instances", |
| 0 | 115 content.empty() ? NULL : content.c_str(), content.size(), |
| 116 false)) | |
| 117 { | |
| 118 LOG(ERROR) << "Cannot import a transfered DICOM instance into Orthanc: " | |
| 119 << info_.GetId(); | |
| 120 throw Orthanc::OrthancException(Orthanc::ErrorCode_CorruptedFile); | |
| 121 } | |
| 122 } | |
| 123 } | |
| 124 else | |
| 125 { | |
| 126 LOG(ERROR) << "Bad MD5 sum in a transfered DICOM instance: " << info_.GetId(); | |
| 127 throw Orthanc::OrthancException(Orthanc::ErrorCode_CorruptedFile); | |
| 128 } | |
| 129 } | |
| 130 | |
| 131 | |
| 132 void DownloadArea::Clear() | |
| 133 { | |
| 134 for (Instances::iterator it = instances_.begin(); | |
| 135 it != instances_.end(); ++it) | |
| 136 { | |
| 137 if (it->second != NULL) | |
| 138 { | |
| 139 delete it->second; | |
| 140 it->second = NULL; | |
| 141 } | |
| 142 } | |
| 143 | |
| 144 instances_.clear(); | |
| 145 } | |
| 146 | |
| 147 | |
| 148 DownloadArea::Instance& DownloadArea::LookupInstance(const std::string& id) | |
| 149 { | |
| 150 Instances::iterator it = instances_.find(id); | |
| 151 | |
| 152 if (it == instances_.end()) | |
| 153 { | |
|
40
1256194e1c08
sync orthanc + sdk 1.5.0 + added more info in error logs
Alain Mazy <am@osimis.io>
parents:
33
diff
changeset
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154 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource, "Unknown instance"); |
| 0 | 155 } |
| 156 else if (it->first != id || | |
| 157 it->second == NULL) | |
| 158 { | |
| 159 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
| 160 } | |
| 161 else | |
| 162 { | |
| 163 return *it->second; | |
| 164 } | |
| 165 } | |
| 166 | |
| 167 | |
| 168 void DownloadArea::WriteUncompressedBucket(const TransferBucket& bucket, | |
| 169 const void* data, | |
| 170 size_t size) | |
| 171 { | |
| 172 if (size != bucket.GetTotalSize()) | |
| 173 { | |
|
40
1256194e1c08
sync orthanc + sdk 1.5.0 + added more info in error logs
Alain Mazy <am@osimis.io>
parents:
33
diff
changeset
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174 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol, |
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1256194e1c08
sync orthanc + sdk 1.5.0 + added more info in error logs
Alain Mazy <am@osimis.io>
parents:
33
diff
changeset
|
175 "WriteUncompressedBucket: " + boost::lexical_cast<std::string>(size) + " != " + boost::lexical_cast<std::string>(bucket.GetTotalSize())); |
| 0 | 176 } |
| 177 | |
| 178 if (size == 0) | |
| 179 { | |
| 180 return; | |
| 181 } | |
| 182 | |
| 183 size_t pos = 0; | |
| 184 | |
| 185 for (size_t i = 0; i < bucket.GetChunksCount(); i++) | |
| 186 { | |
| 187 size_t chunkSize = bucket.GetChunkSize(i); | |
| 188 size_t offset = bucket.GetChunkOffset(i); | |
| 189 | |
| 190 if (pos + chunkSize > size) | |
| 191 { | |
| 192 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
| 193 } | |
| 194 | |
| 195 Instance& instance = LookupInstance(bucket.GetChunkInstanceId(i)); | |
| 196 instance.WriteChunk(offset, reinterpret_cast<const char*>(data) + pos, chunkSize); | |
| 197 | |
| 198 pos += chunkSize; | |
| 199 } | |
| 200 | |
| 201 if (pos != size) | |
| 202 { | |
| 203 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
| 204 } | |
| 205 } | |
| 206 | |
| 207 | |
| 208 void DownloadArea::Setup(const std::vector<DicomInstanceInfo>& instances) | |
| 209 { | |
| 210 totalSize_ = 0; | |
| 211 | |
| 212 for (size_t i = 0; i < instances.size(); i++) | |
| 213 { | |
| 214 const std::string& id = instances[i].GetId(); | |
| 215 | |
| 216 assert(instances_.find(id) == instances_.end()); | |
| 217 instances_[id] = new Instance(instances[i]); | |
| 218 | |
| 219 totalSize_ += instances[i].GetSize(); | |
| 220 } | |
| 221 } | |
| 222 | |
| 223 | |
|
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4c3437217518
fix for compatibility with simplified OrthancPluginCppWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
224 void DownloadArea::CommitInternal(bool simulate) |
| 0 | 225 { |
| 226 boost::mutex::scoped_lock lock(mutex_); | |
| 227 | |
| 228 for (Instances::iterator it = instances_.begin(); | |
| 229 it != instances_.end(); ++it) | |
| 230 { | |
| 231 if (it->second != NULL) | |
| 232 { | |
|
8
4c3437217518
fix for compatibility with simplified OrthancPluginCppWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
233 it->second->Commit(simulate); |
| 0 | 234 delete it->second; |
| 235 it->second = NULL; | |
| 236 } | |
| 237 else | |
| 238 { | |
| 239 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); | |
| 240 } | |
| 241 } | |
| 242 } | |
| 243 | |
| 244 | |
| 245 DownloadArea::DownloadArea(const TransferScheduler& scheduler) | |
| 246 { | |
| 247 std::vector<DicomInstanceInfo> instances; | |
| 248 scheduler.ListInstances(instances); | |
| 249 Setup(instances); | |
| 250 } | |
| 251 | |
| 252 | |
| 253 void DownloadArea::WriteBucket(const TransferBucket& bucket, | |
| 254 const void* data, | |
| 255 size_t size, | |
| 256 BucketCompression compression) | |
| 257 { | |
| 258 boost::mutex::scoped_lock lock(mutex_); | |
| 259 | |
| 260 switch (compression) | |
| 261 { | |
| 262 case BucketCompression_None: | |
| 263 WriteUncompressedBucket(bucket, data, size); | |
| 264 break; | |
| 265 | |
| 266 case BucketCompression_Gzip: | |
| 267 { | |
| 268 std::string uncompressed; | |
| 269 Orthanc::GzipCompressor compressor; | |
| 270 compressor.Uncompress(uncompressed, data, size); | |
| 271 WriteUncompressedBucket(bucket, uncompressed.c_str(), uncompressed.size()); | |
| 272 break; | |
| 273 } | |
| 274 | |
| 275 default: | |
| 276 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); | |
| 277 } | |
| 278 } | |
| 279 | |
| 280 | |
| 281 void DownloadArea::WriteInstance(const std::string& instanceId, | |
| 282 const void* data, | |
| 283 size_t size) | |
| 284 { | |
| 285 std::string md5; | |
| 286 Orthanc::Toolbox::ComputeMD5(md5, data, size); | |
| 287 | |
| 288 { | |
| 289 boost::mutex::scoped_lock lock(mutex_); | |
| 290 | |
| 291 Instances::const_iterator it = instances_.find(instanceId); | |
| 292 if (it == instances_.end() || | |
| 293 it->second == NULL || | |
| 294 it->second->GetInfo().GetId() != instanceId || | |
| 295 it->second->GetInfo().GetSize() != size || | |
| 296 it->second->GetInfo().GetMD5() != md5) | |
| 297 { | |
| 298 throw Orthanc::OrthancException(Orthanc::ErrorCode_CorruptedFile); | |
| 299 } | |
| 300 else | |
| 301 { | |
| 302 it->second->WriteChunk(0, data, size); | |
| 303 } | |
| 304 } | |
| 305 } | |
| 306 | |
| 307 | |
| 308 void DownloadArea::CheckMD5() | |
| 309 { | |
| 310 LOG(INFO) << "Checking MD5 sum without committing (testing)"; | |
|
8
4c3437217518
fix for compatibility with simplified OrthancPluginCppWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
311 CommitInternal(true); |
| 0 | 312 } |
| 313 | |
| 314 | |
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8
4c3437217518
fix for compatibility with simplified OrthancPluginCppWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
315 void DownloadArea::Commit() |
| 0 | 316 { |
| 317 LOG(INFO) << "Importing transfered DICOM files from the temporary download area into Orthanc"; | |
|
8
4c3437217518
fix for compatibility with simplified OrthancPluginCppWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
318 CommitInternal(false); |
| 0 | 319 } |
| 320 } |