changeset 371:6941a4f449cc

CheckScuTranscoding.py
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 21 Jan 2021 17:05:34 +0100
parents 7eb5b86508b1
children e9b03d8f3b78
files Tests/CheckScuTranscoding.py
diffstat 1 files changed, 407 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Tests/CheckScuTranscoding.py	Thu Jan 21 17:05:34 2021 +0100
@@ -0,0 +1,407 @@
+#!/usr/bin/env python
+
+# Orthanc - A Lightweight, RESTful DICOM Store
+# Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
+# Department, University Hospital of Liege, Belgium
+# Copyright (C) 2017-2021 Osimis S.A., Belgium
+#
+# This program is free software: you can redistribute it and/or
+# modify it under the terms of the GNU General Public License as
+# published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+# 
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+# General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+
+import json
+import os
+import subprocess
+import sys
+import time
+import Toolbox
+
+
+if len(sys.argv) < 2:
+    print('Must provide a path to Orthanc binaries')
+    exit(-1)
+
+
+TMP = '/tmp/OrthancTest'
+TMP_ORTHANC = os.path.join(TMP, 'orthanc')
+TMP_STORESCP = os.path.join(TMP, 'storescp')
+
+CONFIG = os.path.join(TMP, 'orthanc', 'Configuration.json')
+ORTHANC = Toolbox.DefineOrthanc()
+
+if os.path.exists(TMP):
+    print('Temporary path already exists: %s' % TMP)
+    exit(-1)
+
+os.mkdir(TMP)
+os.mkdir(TMP_ORTHANC)
+os.mkdir(TMP_STORESCP)
+
+
+def DropOrthanc():
+    while True:
+        try:
+            instances = Toolbox.DoGet(ORTHANC, '/instances')
+            if len(instances) == 0:
+                break
+            else:
+                for i in instances:
+                    Toolbox.DoDelete(ORTHANC, '/instances/%s' % i)
+        except:
+            # Orthanc is still in its startup process, wait for it to
+            # become available
+            time.sleep(0.05)
+
+
+def CreateStorescpConfiguration(acceptedSyntaxes):
+    with open(os.path.join(TMP_STORESCP, 'config'), 'w') as f:
+        f.write('[[TransferSyntaxes]]\n')
+
+        f.write('[Accepted]\n')
+        for i in range(len(acceptedSyntaxes)):
+            f.write('TransferSyntax%d = %s\n' % (i + 1, acceptedSyntaxes[i]))
+
+        f.write('[[PresentationContexts]]\n')
+        f.write('[StorageSCP]\n')
+
+        # These strings correspond to the SOP class UIDs of the DICOM
+        # instances in folder "../Database/TransferSyntaxes/"
+        SOP_CLASS_UIDS = [
+            '1.2.840.10008.5.1.4.1.1.2',
+            '1.2.840.10008.5.1.4.1.1.4',
+            '1.2.840.10008.5.1.4.1.1.6',
+            '1.2.840.10008.5.1.4.1.1.6.1',
+            '1.2.840.10008.5.1.4.1.1.7',
+        ]
+        
+        for i in range(len(SOP_CLASS_UIDS)):
+            f.write('PresentationContext%d = %s\\Accepted\n' % (i + 1, SOP_CLASS_UIDS[i]))
+
+        f.write('[[Profiles]]\n')
+        f.write('[Default]\n')
+        f.write('PresentationContexts = StorageSCP\n')
+            
+
+def TestStore(config, storescpArgs, tests):
+    config['DicomModalities'] = {
+        'storescp' : [ 'STORESCP', 'localhost', 2000 ]
+    }
+    
+    with open(CONFIG, 'w') as f:
+        f.write(json.dumps(config))
+
+    FNULL = open(os.devnull, 'w')  # Emulates "subprocess.DEVNULL" on Python 2.7
+    process1 = subprocess.Popen(
+        sys.argv[1:] + [ CONFIG, '--no-jobs' ], #, '--trace-dicom' ],
+        cwd = TMP_ORTHANC,
+        #stdout=FNULL, 
+        stderr=FNULL,
+        #shell=True
+        )
+
+    process2 = subprocess.Popen(
+        [ 'storescp', '-p', '2000' ] + storescpArgs,
+        cwd = TMP_STORESCP,
+        #stdout=FNULL, 
+        #stderr=FNULL, 
+        #shell=True
+        )
+
+    success = True
+
+    try:
+        for test in tests:
+            DropOrthanc()
+            for f in os.listdir(TMP_STORESCP):
+                os.remove(os.path.join(TMP_STORESCP, f))
+
+            i = Toolbox.UploadInstance(ORTHANC, test[0]) ['ID']       
+            
+            try:
+                Toolbox.DoPost(ORTHANC, '/modalities/storescp/store', {
+                    'Resources' : [ i ],
+                    'Synchronous' : True,
+                })
+            except:
+                if test[1] != None:
+                    print('INTERNAL ERROR on: %s' % test[0])
+                    success = False
+                    continue
+
+            f = os.listdir(TMP_STORESCP)
+            if len(f) > 1:
+                print('INTERNAL ERROR')
+                success = False
+            elif len(f) == 0:
+                if test[1] != None:
+                    print('No file was received by storescp! %s' % test[0])
+                    success = False
+            else:
+                if test[1] == None:
+                    print('No file should have been received by storescp! %s' % test[0])
+                    success = False
+                else:
+                    with open(os.path.join(TMP_STORESCP, f[0]), 'rb') as f:
+                        ts = Toolbox.GetTransferSyntax(f.read())
+
+                    if ts != test[1]:
+                        print('TRANSFER SYNTAX MISMATCH: observed %s vs. expected %s' % (ts, test[1]))
+                        success = False
+                
+    except Exception as e:
+        print('EXCEPTION: %s' % e)
+        success = False
+
+    process1.terminate()
+    process2.terminate()
+    
+    process1.wait()
+    process2.wait()
+
+    return success
+
+
+def Assert(b):
+    if not b:
+        raise Exception('Bad result')
+
+
+
+##
+## Each test specifies: The input DICOM instance, and the expected
+## transfer syntax as received by storescp
+##
+
+
+print('==== TEST 1 ====')
+Assert(TestStore(
+    {
+        'DicomScuPreferredTransferSyntax' : '1.2.840.10008.1.2.1',  # Little Endian Explicit
+    },
+    [ '+xa' ],  # storescp accepts any transfer syntax
+                # (DicomScuPreferredTransferSyntax has no effect)
+    [
+        ('TransferSyntaxes/1.2.840.10008.1.2.dcm', '1.2.840.10008.1.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', '1.2.840.10008.1.2.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', '1.2.840.10008.1.2.4.51'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', '1.2.840.10008.1.2.4.70'),
+    ]))
+
+
+print('==== TEST 2 ====')
+Assert(TestStore(
+    {
+        'DicomScuPreferredTransferSyntax' : '1.2.840.10008.1.2.2',  # Big Endian
+    },
+    [ '+xa' ],  # storescp accepts any transfer syntax
+                # (DicomScuPreferredTransferSyntax has no effect)
+    [
+        ('TransferSyntaxes/1.2.840.10008.1.2.dcm', '1.2.840.10008.1.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', '1.2.840.10008.1.2.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', '1.2.840.10008.1.2.4.51'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', '1.2.840.10008.1.2.4.70'),
+    ]))
+
+
+print('==== TEST 3 ====')
+Assert(TestStore(
+    {
+        'DicomScuPreferredTransferSyntax' : '1.2.840.10008.1.2.4.70',  # JPEG baseline 12bpp
+    },
+    [ '+xa' ],  # storescp accepts any transfer syntax
+                # (DicomScuPreferredTransferSyntax has no effect)
+    [
+        ('TransferSyntaxes/1.2.840.10008.1.2.dcm', '1.2.840.10008.1.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', '1.2.840.10008.1.2.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', '1.2.840.10008.1.2.4.51'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', '1.2.840.10008.1.2.4.70'),
+    ]))
+
+
+print('==== TEST 4 ====')
+Assert(TestStore(
+    {
+        'DicomScuPreferredTransferSyntax' : '1.2.840.10008.1.2.1',  # Little Endian Explicit
+    },
+    [ ],  # storescp only accepts uncompressed transfer syntaxes
+    [
+        ('TransferSyntaxes/1.2.840.10008.1.2.dcm', '1.2.840.10008.1.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', '1.2.840.10008.1.2.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', '1.2.840.10008.1.2.1'),
+    ]))
+
+
+print('==== TEST 5 ====')
+Assert(TestStore(
+    {
+        # Defaults to "1.2.840.10008.1.2.1", Little Endian Explicit
+        # (was Little Endian Implicit in Orthanc between 1.7.0 and 1.8.2)
+    },
+    [ ],  # storescp only accepts uncompressed transfer syntaxes
+    [
+        ('TransferSyntaxes/1.2.840.10008.1.2.dcm', '1.2.840.10008.1.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', '1.2.840.10008.1.2.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', '1.2.840.10008.1.2.1'),
+    ]))
+
+
+print('==== TEST 6 ====')
+Assert(TestStore(
+    {
+        'DicomScuPreferredTransferSyntax' : '1.2.840.10008.1.2',  # Little Endian Implicit
+    },
+    [ ],  # storescp only accepts uncompressed transfer syntaxes
+    [
+        ('TransferSyntaxes/1.2.840.10008.1.2.dcm', '1.2.840.10008.1.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', '1.2.840.10008.1.2.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', '1.2.840.10008.1.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', '1.2.840.10008.1.2'),
+    ]))
+
+
+print('==== TEST 7 ====')
+Assert(TestStore(
+    {
+        'DicomScuPreferredTransferSyntax' : '1.2.840.10008.1.2.2',  # Big Endian
+    },
+    [ ],  # storescp only accepts uncompressed transfer syntaxes
+    [
+        ('TransferSyntaxes/1.2.840.10008.1.2.dcm', '1.2.840.10008.1.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', '1.2.840.10008.1.2.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', '1.2.840.10008.1.2.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', '1.2.840.10008.1.2.2'),
+    ]))
+
+
+print('==== TEST 8 ====')
+Assert(TestStore(
+    {
+        'DicomScuPreferredTransferSyntax' : '1.2.840.10008.1.2.4.70'
+    },
+    [ ],  # storescp only accepts uncompressed transfer syntaxes,
+          # Little Endian Explicit will be chosed by Orthanc (was
+          # Little Endian Implicit in Orthanc between 1.7.0 and 1.8.2)
+    [
+        ('TransferSyntaxes/1.2.840.10008.1.2.dcm', '1.2.840.10008.1.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', '1.2.840.10008.1.2.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', '1.2.840.10008.1.2.1'),
+    ]))
+
+
+print('==== TEST 9 ====')
+Assert(TestStore(
+    {
+        'DicomScuPreferredTransferSyntax' : '1.2.840.10008.1.2.4.70'
+    },
+    [ '+xi' ],  # storescp only accepts Little Endian Implicit (1.2.840.10008.1.2)
+    [
+        ('TransferSyntaxes/1.2.840.10008.1.2.dcm', '1.2.840.10008.1.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', '1.2.840.10008.1.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', '1.2.840.10008.1.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', '1.2.840.10008.1.2'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', '1.2.840.10008.1.2'),
+    ]))
+
+
+print('==== TEST 10 ====')
+CreateStorescpConfiguration([
+    '1.2.840.10008.1.2.4.70',
+])
+Assert(TestStore(
+    {
+        'DicomScuPreferredTransferSyntax' : '1.2.840.10008.1.2.4.70'
+    },
+    [ '-xf', 'config', 'Default' ],  # storescp only accepts "1.2.840.10008.1.2.4.70"
+    [
+        ('TransferSyntaxes/1.2.840.10008.1.2.dcm', '1.2.840.10008.1.2.4.70'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', '1.2.840.10008.1.2.4.70'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', '1.2.840.10008.1.2.4.70'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', '1.2.840.10008.1.2.4.70'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', '1.2.840.10008.1.2.4.70'),
+    ]))
+
+
+print('==== TEST 11 ====')
+CreateStorescpConfiguration([
+    '1.2.840.10008.1.2.4.57',
+])
+Assert(TestStore(
+    {
+        'DicomScuPreferredTransferSyntax' : '1.2.840.10008.1.2.4.70'
+    },
+    [ '-xf', 'config', 'Default' ],
+    [
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.57.dcm', '1.2.840.10008.1.2.4.57'),
+
+        # All the transfers below will be rejected by storescp
+        ('TransferSyntaxes/1.2.840.10008.1.2.dcm', None),
+        ('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', None),
+        ('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', None),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', None),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', None),
+    ]))
+
+
+print('==== TEST 12 ====')
+CreateStorescpConfiguration([
+    '1.2.840.10008.1.2.4.70',
+    '1.2.840.10008.1.2.1',
+])
+Assert(TestStore(
+    {
+        'DicomScuPreferredTransferSyntax' : '1.2.840.10008.1.2.4.70'
+    },
+    [ '-xf', 'config', 'Default' ],
+    [
+        ('TransferSyntaxes/1.2.840.10008.1.2.dcm', '1.2.840.10008.1.2.4.70'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', '1.2.840.10008.1.2.4.70'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', '1.2.840.10008.1.2.4.70'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', '1.2.840.10008.1.2.4.70'),
+    ]))
+
+
+print('==== TEST 13 ====')
+CreateStorescpConfiguration([
+    '1.2.840.10008.1.2.4.90',
+    '1.2.840.10008.1.2.1',
+])
+Assert(TestStore(
+    {
+        # The built-in DCMTK transcoder of Orthanc cannot transcode to
+        # JPEG2k, so the fallback "1.2.840.10008.1.2.1" transfer
+        # syntax will be used if transcoding is needed
+        'DicomScuPreferredTransferSyntax' : '1.2.840.10008.1.2.4.90'
+    },
+    [ '-xf', 'config', 'Default' ],
+    [
+        ('TransferSyntaxes/1.2.840.10008.1.2.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', '1.2.840.10008.1.2.1'),
+        ('TransferSyntaxes/1.2.840.10008.1.2.4.90.dcm', '1.2.840.10008.1.2.4.90'),
+    ]))
+
+
+print('Success!')