Mercurial > hg > orthanc-tests

changeset 553:6004be7f70a8

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added GuessPixelDataVR.py
author Sebastien Jodogne <s.jodogne@gmail.com>
date Sun, 25 Jun 2023 11:46:25 +0200
parents 71096a3e3006
children ede184638961
files Tests/GuessPixelDataVR.py
diffstat 1 files changed, 60 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Tests/GuessPixelDataVR.py	Sun Jun 25 11:46:25 2023 +0200
@@ -0,0 +1,60 @@
+#!/usr/bin/env python3
+
+import os
+import sys
+import pydicom
+
+ROOT = os.path.join(os.path.dirname(__file__), '..', 'Database')
+
+for root, dirs, files in os.walk(ROOT):
+    for f in files:
+        path = os.path.join(root, f)
+        
+        try:
+            ds = pydicom.dcmread(path)
+        except:
+            continue
+
+        ts = ds.file_meta.TransferSyntaxUID
+
+        if not 'PixelData' in ds:
+            print(path, '=> no pixel data')
+            continue
+
+        print(path)
+
+        if ts == '1.2.840.10008.1.2':
+            # Implicit VR Endian
+            # https://dicom.nema.org/medical/dicom/current/output/chtml/part05/chapter_A.html#sect_A.1
+            assert(ds['PixelData'].VR == 'OW')
+            
+        elif ts in [ '1.2.840.10008.1.2.1',
+                     '1.2.840.10008.1.2.2' ]:
+            # Explicit VR Little Endian
+            # https://dicom.nema.org/medical/dicom/current/output/chtml/part05/sect_A.2.html
+
+            # DICOM Big Endian Transfer Syntax (Explicit VR) - Retired, but same rule
+            # https://dicom.nema.org/medical/dicom/2016b/output/chtml/part05/sect_A.3.html
+            
+            if f in [ 'PilatesArgenturGEUltrasoundOsiriX.dcm',
+                      'KarstenHilbertRF.dcm',
+                      'Issue143.dcm' ]:
+                continue
+            
+            if ds['BitsAllocated'].value <= 8:
+                assert(ds['PixelData'].VR == 'OB')
+            else:
+                assert(ds['PixelData'].VR == 'OW')
+
+        else:
+            if (('Beaufix/IM-' in path or
+                 'Comunix/Ct/IM-' in path or
+                 'Comunix/Pet/IM-' in path or
+                 'Knee/T1/IM-' in path or
+                 'Knee/T2/IM-' in path) and
+                ts == '1.2.840.10008.1.2.4.91'):
+                # JPEG2k should be "OB", but this is not the case of these modalities
+                continue
+
+            assert(ds['PixelData'].VR == 'OB')
+