view NewTests/helpers.py @ 655:b4fed8dca955

moving to python3 in DICOMweb tests
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 05 Jun 2024 11:41:00 +0200
parents 79812e0df162
children 8ba9b20ae95f bdb9763d53ff
line wrap: on
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import unittest
from orthanc_api_client import OrthancApiClient
import subprocess
import json
import os
import typing
import shutil
import glob
import time
from threading import Thread


import pathlib
here = pathlib.Path(__file__).parent.resolve()


default_base_config = {
    "AuthenticationEnabled": False,
    "RemoteAccessAllowed": True
}


def get_container_health(container_name):
    try:
        # Run the docker inspect command
        result = subprocess.run(
            ["docker", "inspect", "--format", "{{.State.Health.Status}}", container_name],
            capture_output=True,
            text=True,
            check=True,
        )
        
        # Extract the health status from the command output
        return result.stdout.strip()

    except subprocess.CalledProcessError as e:
        print(f"Error checking container health: {e}")
        return None

def wait_container_healthy(container_name):
    retry = 0

    while (get_container_health(container_name) != "healthy" and retry < 200):
        print(f"Waiting for {container_name} to be healty")
        time.sleep(1)



class Helpers:

    orthanc_under_tests_hostname: str = 'localhost'
    orthanc_under_tests_http_port: int = 8052
    orthanc_under_tests_dicom_port: int = 4252
    orthanc_under_tests_exe: str = None
    orthanc_previous_version_exe: str = None
    orthanc_under_tests_docker_image: str = None
    skip_preparation: bool = False
    break_after_preparation: bool = False
    break_before_preparation: bool = False
    plugins: typing.List[str] = []

    @classmethod
    def get_orthanc_url(cls):
        return f"http://{cls.orthanc_under_tests_hostname}:{cls.orthanc_under_tests_http_port}"

    @classmethod
    def get_orthanc_ip(cls):
        return cls.orthanc_under_tests_hostname

    @classmethod
    def get_orthanc_dicom_port(cls):
        return cls.orthanc_under_tests_dicom_port

    @classmethod
    def is_docker(cls):
        return cls.orthanc_under_tests_exe is None and cls.orthanc_under_tests_docker_image is not None

    @classmethod
    def is_exe(cls):
        return cls.orthanc_under_tests_exe is not None and cls.orthanc_under_tests_docker_image is None

    @classmethod
    def find_executable(cls, name):
        p = os.path.join('/usr/local/bin', name)
        if os.path.isfile(p):
            return p

        p = os.path.join('/usr/local/sbin', name)
        if os.path.isfile(p):
            return p

        return name


class OrthancTestCase(unittest.TestCase):

    o: OrthancApiClient = None  # the orthanc under tests api client
    _orthanc_process = None
    _orthanc_container_name = None
    _orthanc_is_running = False
    _orthanc_logger_thread = None
    _show_orthanc_output = False

    @classmethod
    def setUpClass(cls):

        cls.o = OrthancApiClient(Helpers.get_orthanc_url())
        cls._prepare()

    @classmethod
    def tearDownClass(cls):
        if not Helpers.break_after_preparation:
            cls.kill_orthanc()
        cls.terminate()

    @classmethod
    def prepare(cls):
        pass # to override

    @classmethod
    def terminate(cls):
        pass # to override

    @classmethod
    def _prepare(cls):
        if not Helpers.skip_preparation:
            cls.prepare()

    @classmethod
    def get_storage_path(cls, storage_name: str):
        return str(here / "storages" / f"{storage_name}")

    @classmethod
    def generate_configuration(cls, config_name: str, config: object, storage_name: str, plugins = []):
        
        # add plugins and default storge directory
        if plugins and len(plugins) > 0:
            config["Plugins"] = plugins

        if Helpers.is_exe() and not "StorageDirectory" in config:
            config["StorageDirectory"] = cls.get_storage_path(storage_name=storage_name)

        if not "Name" in config:
            config["Name"] = config_name

        if not "HttpPort" in config:
            config["HttpPort"] = Helpers.orthanc_under_tests_http_port

        if not "DicomPort" in config:
            config["DicomPort"] = Helpers.orthanc_under_tests_dicom_port

        # copy the values from the base config
        for k, v in default_base_config.items():
            if not k in config:
                config[k] = v

        # save to disk
        path = str(here / "configurations" / f"{config_name}.json")
        with open(path, "w") as f:
            json.dump(config, f, indent=4)

        return path

    @classmethod
    def clear_storage(cls, storage_name: str):
        storage_path = cls.get_storage_path(storage_name=storage_name)
        if Helpers.is_exe():

            # clear the directory but keep it !
            for root, dirs, files in os.walk(storage_path):
                for f in files:
                    os.unlink(os.path.join(root, f))
                for d in dirs:
                    shutil.rmtree(os.path.join(root, d))
                    shutil.rmtree(storage_path, ignore_errors=True)
        else:
            cmd = [
                    "docker", "run", "--rm", 
                    "-v", f"{storage_path}:/var/lib/orthanc/db/",
                    "--name", "storage-cleanup",
                    "debian:12-slim",
                    "rm", "-rf", "/var/lib/orthanc/db/*"
                ]

            subprocess.run(cmd, check=True)

    @classmethod
    def is_storage_empty(cls, storage_name: str):
        storage_path = cls.get_storage_path(storage_name=storage_name)
        return len(glob.glob(os.path.join(storage_path, '*'))) == 0

    @classmethod
    def create_docker_network(cls, network: str):
        if Helpers.is_docker():
            subprocess.run(["docker", "network", "rm", network])      # ignore error
            subprocess.run(["docker", "network", "create", network])

    @classmethod
    def launch_orthanc_to_prepare_db(cls, config_name: str = None, config: object = None, config_path: str = None, storage_name: str = None, plugins = []):
        if config_name and storage_name and config:
            # generate the configuration file
            config_path = cls.generate_configuration(
                config_name=config_name,
                storage_name=storage_name,
                config=config,
                plugins=plugins
                )
        elif not config_path or not storage_name or not config_name:
            raise RuntimeError("Invalid configuration")

        # run orthanc
        if Helpers.orthanc_previous_version_exe:
            cls.launch_orthanc_exe(
                exe_path=Helpers.orthanc_previous_version_exe,
                config_path=config_path
            )
        elif Helpers.orthanc_previous_version_docker_image:
            cls.launch_orthanc_docker(
                docker_image=Helpers.orthanc_previous_version_docker_image,
                storage_name=storage_name,
                config_name=config_name,
                config_path=config_path
            )
        else:
            raise RuntimeError("Invalid configuration, can not launch Orthanc")

    @classmethod
    def launch_orthanc_under_tests(cls, config_name: str = None, config: object = None, config_path: str = None, storage_name: str = None, plugins = [], docker_network: str = None, enable_verbose: bool = False, show_orthanc_output: bool = False):
        cls._show_orthanc_output = show_orthanc_output
        
        if config_name and storage_name and config:
            # generate the configuration file
            config_path = cls.generate_configuration(
                config_name=config_name,
                storage_name=storage_name,
                config=config,
                plugins=plugins
                )
        elif not config_path or not storage_name or not config_name:
            raise RuntimeError("Invalid configuration")

        # run orthanc
        if Helpers.orthanc_under_tests_exe:
            cls.launch_orthanc_exe(
                exe_path=Helpers.orthanc_under_tests_exe,
                config_path=config_path,
                enable_verbose=enable_verbose
            )
        elif Helpers.orthanc_under_tests_docker_image:
            cls.launch_orthanc_docker(
                docker_image=Helpers.orthanc_under_tests_docker_image,
                storage_name=storage_name,
                config_name=config_name,
                config_path=config_path,
                network=docker_network,
                enable_verbose=enable_verbose
            )
        else:
            raise RuntimeError("Invalid configuration, can not launch Orthanc")

    @classmethod
    def launch_orthanc_exe(cls, exe_path: str, config_path: str, enable_verbose: bool = False, show_orthanc_output: bool = False):
            if enable_verbose:
                cmd = [exe_path, "--verbose", config_path]
            else:
                cmd = [exe_path, config_path]

            cls._orthanc_process = subprocess.Popen(
                cmd,
                stdout=subprocess.PIPE,
                stderr=subprocess.PIPE
            )

            cls.o.wait_started(10)
            if not cls.o.is_alive():
                output = cls.get_orthanc_process_output()
                print("Orthanc output\n" + output)

                raise RuntimeError(f"Orthanc failed to start '{exe_path}', conf = '{config_path}'.  Check output above")

    @classmethod
    def launch_orthanc_docker(cls, docker_image: str, storage_name: str, config_path: str, config_name: str, network: str = None, enable_verbose: bool = False):
            storage_path = cls.get_storage_path(storage_name=storage_name)

            cmd = [
                    "docker", "run", "--rm", 
                    "-e", "VERBOSE_ENABLED=true" if enable_verbose else "VERBOSE_ENABLED=false",
                    "-e", "VERBOSE_STARTUP=true" if enable_verbose else "VERBOSE_STARTUP=false", 
                    "-v", f"{config_path}:/etc/orthanc/orthanc.json",
                    "-v", f"{storage_path}:/var/lib/orthanc/db/",
                    "--name", config_name,
                    "-p", f"{Helpers.orthanc_under_tests_http_port}:{Helpers.orthanc_under_tests_http_port}",
                    "-p", f"{Helpers.orthanc_under_tests_dicom_port}:{Helpers.orthanc_under_tests_dicom_port}"
                ]
            if network:
                cmd.extend(["--network", network])
            cmd.append(docker_image)

            cls._orthanc_container_name = config_name
            print("docker cmd line: " + " ".join(cmd))

            cls._orthanc_process = subprocess.Popen(
                cmd,
                stdout=subprocess.PIPE,
                stderr=subprocess.PIPE
            )

            cls.o.wait_started(10)
            if not cls.o.is_alive():
                output = cls.get_orthanc_process_output()
                print("Orthanc output\n" + output)

                raise RuntimeError(f"Orthanc failed to start Orthanc through Docker '{docker_image}', conf = '{config_path}'.  Check output above")


    @classmethod
    def kill_orthanc(cls):
        if Helpers.is_exe():
            if cls._orthanc_process:
                cls._orthanc_process.kill()
            else:
                return
        else:
            subprocess.run(["docker", "stop", cls._orthanc_container_name])
        
        if cls._show_orthanc_output:
            output = cls.get_orthanc_process_output()
            print("Orthanc output\n" + output)

        cls._orthanc_process = None

    @classmethod
    def get_orthanc_process_output(cls):
        outputs = cls._orthanc_process.communicate()
        output = ""
        for o in outputs:
            output += o.decode('utf-8')
        return output