Mercurial > hg > orthanc-tests
view Database/Formats/Generate.sh @ 459:723d4535252e
WSI tests: set orthanc url
author | Alain Mazy <am@osimis.io> |
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date | Wed, 30 Mar 2022 09:35:35 +0200 |
parents | 2a29bcff60a7 |
children |
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#!/bin/bash set -e # http://gdcm.sourceforge.net/html/gdcmconv.html gdcmconv -i ../Brainix/Epi/IM-0001-0001.dcm -o JpegLossless.dcm -L gdcmconv -i ../Brainix/Epi/IM-0001-0001.dcm -o Jpeg.dcm -J gdcmconv -i ../Brainix/Epi/IM-0001-0001.dcm -o Rle.dcm -R # Generate study/series/sop instance UID++++ dcmodify -e '(0008,0005)' -m '(0010,0020)=FromGDCM' -gin -gst -gse JpegLossless.dcm dcmodify -e '(0008,0005)' -m '(0010,0020)=FromGDCM' -gin -gst -gse Jpeg.dcm dcmodify -e '(0008,0005)' -m '(0010,0020)=FromGDCM' -gin -gst -gse Rle.dcm rm -f JpegLossless.dcm.bak Jpeg.dcm.bak Rle.dcm.bak gdcmraw -t PixelData ../Brainix/Epi/IM-0001-0001.dcm PixelData.raw convert -define png:include-chunks=none -define png:compression-level=9 -size 256x256 -depth 16 gray:PixelData.raw Brainix.png gdcmraw -t PixelData ../KarstenHilbertRF.dcm PixelData.raw convert -define png:include-chunks=none -define png:compression-level=9 -size 512x464 -depth 8 gray:PixelData.raw KarstenHilbertRF.png # Decompress the multiframe image gdcmconv -w ../Multiframe.dcm tmp.dcm gdcmraw -t PixelData ./tmp.dcm PixelData.raw SIZE=$((512*512)) dd if=PixelData.raw of=PixelData2.raw bs=$SIZE count=1 skip=0 &> /dev/null convert -define png:include-chunks=none -define png:compression-level=9 -size 512x512 -depth 8 gray:PixelData2.raw Multiframe0.png dd if=PixelData.raw of=PixelData2.raw bs=$SIZE count=1 skip=75 &> /dev/null convert -define png:include-chunks=none -define png:compression-level=9 -size 512x512 -depth 8 gray:PixelData2.raw Multiframe75.png # Decompress the signed CT image, ignoring the fact that the data is signed gdcmraw -t PixelData ../SignedCT.dcm PixelData.raw convert -define png:include-chunks=none -define png:compression-level=9 -size 512x512 -depth 16 gray:PixelData.raw SignedCT.png rm -f PixelData.raw PixelData2.raw tmp.dcm