Mercurial > hg > orthanc-tests
view Plugins/Worklists/Run.py @ 498:62f37c13d4d0
new tests for modifications after sanity checks cleanup
author | Alain Mazy <am@osimis.io> |
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date | Mon, 26 Sep 2022 18:57:27 +0200 |
parents | 06eea14c5906 |
children | 933fe1bbce4f |
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#!/usr/bin/python # -*- coding: utf-8 -*- # Orthanc - A Lightweight, RESTful DICOM Store # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics # Department, University Hospital of Liege, Belgium # Copyright (C) 2017-2022 Osimis S.A., Belgium # Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium # # This program is free software: you can redistribute it and/or # modify it under the terms of the GNU General Public License as # published by the Free Software Foundation, either version 3 of the # License, or (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see <http://www.gnu.org/licenses/>. import argparse import os import pprint import re import subprocess import sys import tempfile import unittest from shutil import copyfile sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) from Toolbox import * ## ## Parse the command-line arguments ## parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOM worklist plugin.') parser.add_argument('--server', default = 'localhost', help = 'Address of the Orthanc server to test') parser.add_argument('--rest', type = int, default = 8042, help = 'Port to the REST API') parser.add_argument('--username', default = 'alice', help = 'Username to the REST API') parser.add_argument('--password', default = 'orthanctest', help = 'Password to the REST API') parser.add_argument('--dicom', type = int, default = 4242, help = 'DICOM port of the Orthanc instance to test') parser.add_argument('options', metavar = 'N', nargs = '*', help='Arguments to Python unittest') args = parser.parse_args() ORTHANC = DefineOrthanc(server = args.server, username = args.username, password = args.password, restPort = args.rest) ## ## Toolbox ## DATABASE = os.path.abspath(os.path.normpath(os.path.join(os.path.dirname(__file__), '..', '..', 'Database', 'Worklists'))) WORKING = os.path.join(DATABASE, 'Working') print('Database directory: %s' % DATABASE) print('Working directory: %s' % WORKING) try: os.mkdir(WORKING) except Exception as e: # The working folder has already been created pass def ClearDatabase(): for f in os.listdir(WORKING): if f != 'lockfile': os.remove(os.path.join(WORKING, f)) def AddToDatabase(worklist): extension = os.path.splitext(worklist)[1].lower() source = os.path.join(DATABASE, worklist) target = os.path.join(WORKING, os.path.basename(worklist) + '.wl') if extension == '.dump': subprocess.check_call([ 'dump2dcm', '--write-xfer-little', source, target ]) else: copyfile(source, target) def RunQuery(source, ignoreTags): with tempfile.NamedTemporaryFile() as f: subprocess.check_call([ 'dump2dcm', '--write-xfer-little', os.path.join(DATABASE, source), f.name ]) a = subprocess.check_output([ 'findscu', '-v', '--call', 'ORTHANC', '-aet', 'ORTHANCTEST', args.server, str(args.dicom), f.name ], stderr = subprocess.STDOUT).splitlines() if len(filter(lambda x: x.startswith('E:'), a)) > 0: raise Exception('Error while running findscu') b = map(lambda x: x[3:], filter(lambda x: (x.startswith('I: ---') or x.startswith('W: ---') or x.startswith('I: (') or x.startswith('W: (')), a)) b = map(lambda x: re.sub(r'\s*#.*', '', x), b) answers = [] current = [] isQuery = True for l in b: l = l.replace('\0', '') if l[0] == '-': if isQuery: isQuery = False else: # This is a separator between DICOM datasets if len(current) > 0: answers.append(current) current = [] else: if not isQuery: tag = l[1:10].lower() if not tag in ignoreTags: current.append(l) if len(current) > 0: answers.append(current) return answers def CompareAnswers(expected, actual): if len(expected) != len(actual): return False if len(expected) == 0: return True for i in range(len(expected)): for j in range(len(actual)): if expected[i] == actual[j]: return True return False def ParseTopLevelTags(answer): tags = {} for line in answer: m = re.match(r'^\(([0-9a-f]{4},[0-9a-f]{4})\)\s*..\s*\[([^]]*)\]', line) tags[m.group(1)] = m.group(2).strip() return tags ## ## The tests ## class Orthanc(unittest.TestCase): def setUp(self): if (sys.version_info >= (3, 0)): # Remove annoying warnings about unclosed socket in Python 3 import warnings warnings.simplefilter("ignore", ResourceWarning) ClearDatabase() DoPost(ORTHANC, '/tools/execute-script', 'function IncomingWorklistRequestFilter(query, origin) return query end', 'application/lua') def test_single(self): for db in range(1, 11): ClearDatabase() AddToDatabase('Dcmtk/Database/wklist%d.dump' % db) for query in range(0, 13): answers = RunQuery('Dcmtk/Queries/wlistqry%d.dump' % query, [ '0008,0005', '0040,0004', '0040,0005', '0040,0020', ]) with open(os.path.join('%s/Dcmtk/Expected/single-%d-%d.json' % (DATABASE, db, query)), 'r') as f: expected = json.loads(f.read()) self.assertTrue(CompareAnswers(expected, answers)) def test_all(self): ClearDatabase() for db in range(1, 11): AddToDatabase('Dcmtk/Database/wklist%d.dump' % db) for query in range(0, 13): answers = RunQuery('Dcmtk/Queries/wlistqry%d.dump' % query, [ '0008,0005', '0040,0004', '0040,0005', '0040,0020', ]) with open(os.path.join('%s/Dcmtk/Expected/all-%d.json' % (DATABASE, query)), 'r') as f: expected = json.loads(f.read()) self.assertTrue(CompareAnswers(expected, answers)) def test_vet(self): AddToDatabase('Sequences/STATION_AET/orig.7705.dump') AddToDatabase('Sequences/STATION_AET/orig.7814.dump') AddToDatabase('Sequences/STATION_AET/orig.7814.without.seq.dump') self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.length.dump', []))) self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.seq.dump', []))) self.assertEqual(2, len(RunQuery('Sequences/Queries/orig.7814.dump', []))) @unittest.skip("This test requires to enable option 'FilterIssuerAet' in the sample worklist plugin") def test_filter_issuer_aet(self): AddToDatabase('Sequences/STATION_AET/orig.7814.dump') AddToDatabase('Sequences/STATION_AET/orig.7814.other.station.dump') self.assertEqual(1, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', []))) def test_filter_issuer_aet_from_lua(self): AddToDatabase('Sequences/STATION_AET/orig.7814.dump') # targeted at STATION_AET AddToDatabase('Sequences/STATION_AET/orig.7814.other.station.dump') # targeted at ORTHANC_TEST self.assertEqual(2, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', []))) # query is not targeting any station -> match all InstallLuaScript(ORTHANC, "\ function IncomingWorklistRequestFilter(query, origin)\ query['0040,0100'][1]['0040,0001'] = origin['RemoteAet']\ return query\ end"); self.assertEqual(1, len(RunQuery('Sequences/Queries/7814.without.station.aet.dump', []))) # now, query is targeting ORTHANCTEST -> match one def test_remove_aet_from_query(self): AddToDatabase('Sequences/NO_STATION_AET/orig.7814.other.station.dump') # targeted at ORTHANCTEST self.assertEqual(0, len(RunQuery('Sequences/Queries/orig.7814.dump', []))) # query is targeting STATION_AET -> will not match InstallLuaScript(ORTHANC, "\ function IncomingWorklistRequestFilter(query, origin)\ query['0040,0100'][1]['0040,0001'] = nil\ return query\ end"); self.assertEqual(1, len(RunQuery('Sequences/Queries/orig.7814.dump', []))) # query is targeting STATION_AET but, since we have removed this field, we should get 2 queries def test_encodings(self): # Check out ../../Database/Worklists/Encodings/database.dump TEST = u'Test-éüäöòДΘĝדصķћ๛ネİ' ENCODINGS = { 'Arabic' : [ 'ISO_IR 127' ], 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 'Cyrillic' : [ 'ISO_IR 144' ], 'Greek' : [ 'ISO_IR 126' ], 'Hebrew' : [ 'ISO_IR 138' ], 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], 'Latin1' : [ 'ISO_IR 100' ], 'Latin2' : [ 'ISO_IR 101' ], 'Latin3' : [ 'ISO_IR 109' ], 'Latin4' : [ 'ISO_IR 110' ], 'Latin5' : [ 'ISO_IR 148' ], 'Thai' : [ 'ISO_IR 166', 'tis-620' ], 'Utf8' : [ 'ISO_IR 192' ], } AddToDatabase('Encodings/database.dump') for name, encoding in ENCODINGS.iteritems(): self.assertEqual(name, DoPut(ORTHANC, '/tools/default-encoding', name)) result = RunQuery('Encodings/query.dump', []) self.assertEqual(1, len(result)) self.assertEqual(2, len(result[0])) tags = ParseTopLevelTags(result[0]) if len(encoding) == 1: encoded = TEST.encode(name, 'ignore') else: encoded = TEST.encode(encoding[1], 'ignore') self.assertEqual(encoding[0], tags['0008,0005']) self.assertEqual(encoded, tags['0010,0010']) def test_bitbucket_issue_49(self): def Check(encoding, expectedEncoding, expectedContent): DoPut(ORTHANC, '/tools/default-encoding', encoding) result = RunQuery('Encodings/issue49-latin1.query', []) self.assertEqual(1, len(result)) self.assertEqual(2, len(result[0])) tags = ParseTopLevelTags(result[0]) self.assertEqual(expectedEncoding, tags['0008,0005']) self.assertEqual(expectedContent, tags['0010,0010']) AddToDatabase('Encodings/issue49-latin1.wl') Check('Ascii', 'ISO_IR 6', r'VANILL^LAURA^^^Mme') Check('Utf8', 'ISO_IR 192', r'VANILLÉ^LAURA^^^Mme') Check('Latin1', 'ISO_IR 100', u'VANILLÉ^LAURA^^^Mme'.encode('latin-1', 'ignore')) def test_format(self): DoPut(ORTHANC, '/tools/default-encoding', 'Latin1') AddToDatabase('Dcmtk/Database/wklist1.dump') # Only behavior of Orthanc <= 1.9.4 a = DoPost(ORTHANC, '/modalities/self/find-worklist', { 'PatientID' : '' }) self.assertEqual(1, len(a)) self.assertEqual(2, len(a[0])) self.assertEqual('AV35674', a[0]['PatientID']) self.assertEqual('ISO_IR 100', a[0]['SpecificCharacterSet']) a = DoPost(ORTHANC, '/modalities/self/find-worklist', { 'Query' : { 'PatientID' : '' } }) self.assertEqual(1, len(a)) self.assertEqual(2, len(a[0])) self.assertEqual('AV35674', a[0]['PatientID']) self.assertEqual('ISO_IR 100', a[0]['SpecificCharacterSet']) a = DoPost(ORTHANC, '/modalities/self/find-worklist', { 'Query' : { 'PatientID' : '' }, 'Short' : True }) self.assertEqual(1, len(a)) self.assertEqual(2, len(a[0])) self.assertEqual('AV35674', a[0]['0010,0020']) self.assertEqual('ISO_IR 100', a[0]['0008,0005']) a = DoPost(ORTHANC, '/modalities/self/find-worklist', { 'Query' : { 'PatientID' : '' }, 'Full' : True }) self.assertEqual(1, len(a)) self.assertEqual(2, len(a[0])) self.assertEqual('AV35674', a[0]['0010,0020']['Value']) self.assertEqual('PatientID', a[0]['0010,0020']['Name']) self.assertEqual('ISO_IR 100', a[0]['0008,0005']['Value']) self.assertEqual('SpecificCharacterSet', a[0]['0008,0005']['Name']) try: print('\nStarting the tests...') unittest.main(argv = [ sys.argv[0] ] + args.options) finally: print('\nDone')