Mercurial > hg > orthanc-tests
view Plugins/DicomWeb/Run.py @ 154:4a533d003080
test_find_group_length
author | Sebastien Jodogne <s.jodogne@gmail.com> |
---|---|
date | Thu, 16 Aug 2018 10:37:35 +0200 |
parents | 90e5331ddee9 |
children | e244312964d6 |
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#!/usr/bin/python # Orthanc - A Lightweight, RESTful DICOM Store # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics # Department, University Hospital of Liege, Belgium # Copyright (C) 2017-2018 Osimis S.A., Belgium # # This program is free software: you can redistribute it and/or # modify it under the terms of the GNU General Public License as # published by the Free Software Foundation, either version 3 of the # License, or (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see <http://www.gnu.org/licenses/>. # You must add the following to the configuration file: # # "DicomWeb" : { # "Servers" : { # "sample" : [ "http://localhost:8042/dicom-web/", "alice", "orthanctest" ] # } # } import os import pprint import sys import argparse import unittest import re from DicomWeb import * sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) from Toolbox import * ## ## Parse the command-line arguments ## parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOMweb plugin.') parser.add_argument('--server', default = 'localhost', help = 'Address of the Orthanc server to test') parser.add_argument('--rest', type = int, default = 8042, help = 'Port to the REST API') parser.add_argument('--username', default = 'alice', help = 'Username to the REST API') parser.add_argument('--password', default = 'orthanctest', help = 'Password to the REST API') parser.add_argument('--wado', default = '/wado', help = 'Path to the WADO API') parser.add_argument('--dicomweb', default = '/dicom-web/', help = 'Path to the DICOMweb API') parser.add_argument('--force', help = 'Do not warn the user', action = 'store_true') parser.add_argument('options', metavar = 'N', nargs = '*', help='Arguments to Python unittest') args = parser.parse_args() ## ## Configure the testing context ## if not args.force: print(""" WARNING: This test will remove all the content of your Orthanc instance running on %s! Are you sure ["yes" to go on]?""" % args.server) if sys.stdin.readline().strip() != 'yes': print('Aborting...') exit(0) ORTHANC = DefineOrthanc(server = args.server, username = args.username, password = args.password, restPort = args.rest) ## ## The tests ## class Orthanc(unittest.TestCase): def setUp(self): if (sys.version_info >= (3, 0)): # Remove annoying warnings about unclosed socket in Python 3 import warnings warnings.simplefilter("ignore", ResourceWarning) DropOrthanc(ORTHANC) def test_wado_dicom(self): UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') SIZE = 169478 INSTANCE = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' SERIES = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' STUDY = '2.16.840.1.113669.632.20.1211.10000357775' self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado)) self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO')) self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?objectUID=%s' % INSTANCE)) dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s' % INSTANCE) self.assertEqual(SIZE, len(dicom)) dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) self.assertEqual(SIZE, len(dicom)) dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s&studyUID=%s' % (INSTANCE, SERIES, STUDY)) self.assertEqual(SIZE, len(dicom)) dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) self.assertEqual(SIZE, len(dicom)) dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&studyUID=%s' % (INSTANCE, STUDY)) self.assertEqual(SIZE, len(dicom)) self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope' % INSTANCE)) self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&studyUID=nope' % INSTANCE)) self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope&studyUID=nope' % INSTANCE)) def test_wado_image(self): UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') INSTANCE = '1.2.840.113704.7.1.1.6632.1127829031.2' im = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s' % INSTANCE) self.assertEqual('JPEG', im.format) self.assertEqual('L', im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(358, im.size[1]) im = GetImage(ORTHANC, args.wado + '?contentType=image/jpg&requestType=WADO&objectUID=%s' % INSTANCE) self.assertEqual('JPEG', im.format) im = GetImage(ORTHANC, args.wado + '?contentType=image/png&requestType=WADO&objectUID=%s' % INSTANCE) self.assertEqual('PNG', im.format) self.assertEqual('L', im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(358, im.size[1]) def test_stow(self): self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) a = SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) self.assertEqual(0, len(a['00081198']['Value'])) # No error self.assertEqual(1, len(a['00081199']['Value'])) # 1 success self.assertTrue(a['00081190']['Value'][0].endswith('studies/2.16.840.1.113669.632.20.1211.10000098591')) self.assertTrue(a['00081199']['Value'][0]['00081190']['Value'][0]. endswith('series/1.2.840.113704.1.111.5692.1127828999.2/instances/1.2.840.113704.7.1.1.6632.1127829031.2')) # Remove the "http://localhost:8042" prefix url = a['00081190']['Value'][0] url = re.sub(r'(http|https)://[^/]+(/.*)', r'\2', url) # Get the content-length of all the multiparts of this WADO-RS request b = DoGet(ORTHANC, url).decode('utf-8', 'ignore') parts = re.findall(r'^Content-Length:\s*(\d+)\s*', b, re.IGNORECASE | re.MULTILINE) self.assertEqual(1, len(parts)) self.assertEqual(os.path.getsize(GetDatabasePath('Phenix/IM-0001-0001.dcm')), int(parts[0])) def test_server_get(self): UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/servers'))) self.assertTrue('sample' in DoGet(ORTHANC, '/dicom-web/servers')) serversReadback = DoGet(ORTHANC, '/dicom-web/servers?expand') self.assertEqual('http://localhost:8042/dicom-web/', serversReadback['sample']['Url']) self.assertEqual('alice', serversReadback['sample']['Username']) sample = DoGet(ORTHANC, '/dicom-web/servers/sample') self.assertEqual(3, len(sample)) self.assertTrue('stow' in sample) self.assertTrue('retrieve' in sample) self.assertTrue('get' in sample) # application/dicom+xml self.assertEqual(2, len(re.findall('^--', DoGet(ORTHANC, '/dicom-web/studies', headers = { 'Accept' : 'application/dicom+xml' }), re.MULTILINE))) self.assertEqual(2, len(re.findall('^--', DoPost (ORTHANC, '/dicom-web/servers/sample/get', { 'Uri' : '/studies', 'HttpHeaders' : { 'Accept' : 'application/dicom+xml' } }), re.MULTILINE))) # application/dicom+json self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', headers = { 'Accept' : 'application/dicom+json' }))) self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', { 'Uri' : '/studies', 'HttpHeaders' : { 'Accept' : 'application/dicom+json' }}))) # application/json self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', headers = { 'Accept' : 'application/json' }))) self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', { 'Uri' : '/studies', 'HttpHeaders' : { 'Accept' : 'application/json' }}))) # application/dicom+json is the default as of OrthancDicomWeb-0.5 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies'))) self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', { 'Uri' : '/studies' }))) def test_server_stow(self): UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') self.assertRaises(Exception, lambda: DoPost(ORTHANC, '/dicom-web/servers/sample/stow', { 'Resources' : [ 'nope' ]})) # inexisting resource self.assertEqual(0, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', { 'Resources' : [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]}))) # patient self.assertEqual(0, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', { 'Resources' : [ '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' ]}))) # study self.assertEqual(0, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', { 'Resources' : [ '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' ]}))) # series self.assertEqual(0, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', { 'Resources' : [ 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ]}))) # instance self.assertEqual(0, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', { 'Resources' : [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285', 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ]}))) # altogether def test_server_retrieve(self): UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0002.dcm') UploadInstance(ORTHANC, 'Knee/T2/IM-0001-0001.dcm') self.assertRaises(Exception, lambda: DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', { 'Resources' : [ { 'Study' : 'nope' } ]})) # inexisting resource t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881' } ] }) self.assertEqual(3, len(t['Instances'])) # Missing "Study" field self.assertRaises(Exception, lambda: DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', { 'Resources' : [ { 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ]})) t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) self.assertEqual(2, len(t['Instances'])) t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' } ] }) self.assertEqual(1, len(t['Instances'])) t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' }, { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) self.assertEqual(3, len(t['Instances'])) t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350', 'Instance' : '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' } ] }) self.assertEqual(1, len(t['Instances'])) def test_bitbucket_issue_53(self): # DICOMWeb plugin support for "limit" and "offset" parameters in QIDO-RS # https://bitbucket.org/sjodogne/orthanc/issues/53 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') brainix = '2.16.840.1.113669.632.20.1211.10000357775' knee = '2.16.840.1.113669.632.20.121711.10000160881' a = DoGet(ORTHANC, '/dicom-web/studies', headers = { 'accept' : 'application/json' }) self.assertEqual(2, len(a)) b = [] a = DoGet(ORTHANC, '/dicom-web/studies?limit=1', headers = { 'accept' : 'application/json' }) self.assertEqual(1, len(a)) b.append(a[0]['0020000D']['Value'][0]) a = DoGet(ORTHANC, '/dicom-web/studies?limit=1&offset=1', headers = { 'accept' : 'application/json' }) self.assertEqual(1, len(a)) b.append(a[0]['0020000D']['Value'][0]) self.assertTrue(brainix in b) self.assertTrue(knee in b) try: print('\nStarting the tests...') unittest.main(argv = [ sys.argv[0] ] + args.options) finally: print('\nDone')