Mercurial > hg > orthanc-tests
view Tests/Tests.py @ 36:42ad759ef40a
test PDF embedding
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Thu, 20 Aug 2015 17:05:58 +0200 |
| parents | 1047d7bc5210 |
| children | 6f86a5168e68 |
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#!/usr/bin/env python # -*- coding: utf-8 -*- # Orthanc - A Lightweight, RESTful DICOM Store # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics # Department, University Hospital of Liege, Belgium # # This program is free software: you can redistribute it and/or # modify it under the terms of the GNU General Public License as # published by the Free Software Foundation, either version 3 of the # License, or (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see <http://www.gnu.org/licenses/>. import tempfile import unittest import base64 from PIL import ImageChops from Toolbox import * from xml.dom import minidom _LOCAL = None _REMOTE = None def SetOrthancParameters(local, remote): global _LOCAL, _REMOTE _LOCAL = local _REMOTE = remote def ExtractDicomTags(rawDicom, tags): with tempfile.NamedTemporaryFile(delete = True) as f: f.write(rawDicom) f.flush() data = subprocess.check_output([ 'dcm2xml', f.name ]) result = [] for tag in tags: match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) if match == None: result.append('') else: result.append(match.group(1)) return result def InstallLuaScript(path): with open(GetDatabasePath(path), 'r') as f: DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') def UninstallLuaCallbacks(): DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') def CompareLists(a, b): if len(a) != len(b): return False for i in range(len(a)): d = a[i] - b[i] if abs(d) >= 0.51: # Add some tolerance for rounding errors return False return True class Orthanc(unittest.TestCase): def setUp(self): DropOrthanc(_LOCAL) DropOrthanc(_REMOTE) UninstallLuaCallbacks() #print "In test", self._testMethodName def AssertSameImages(self, truth, url): im = GetImage(_REMOTE, url) self.assertTrue(CompareLists(truth, im.getdata())) def test_system(self): self.assertTrue('Version' in DoGet(_REMOTE, '/system')) self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) def test_upload(self): u = UploadInstance(_REMOTE, 'DummyCT.dcm') self.assertEqual('Success', u['Status']) u = UploadInstance(_REMOTE, 'DummyCT.dcm') self.assertEqual('AlreadyStored', u['Status']) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) self.assertEqual('20070101', i['StudyDate']) def test_upload_2(self): i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] instance = DoGet(_REMOTE, '/instances/%s' % i) self.assertEqual(i, instance['ID']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', instance['MainDicomTags']['SOPInstanceUID']) series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', series['MainDicomTags']['SeriesInstanceUID']) study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', study['MainDicomTags']['StudyInstanceUID']) patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) self.assertEqual('ozp00SjY2xG', patient['MainDicomTags']['PatientID']) dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) self.assertEqual(2472, len(dicom)) self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) def test_images(self): i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) im = GetImage(_REMOTE, '/instances/%s/preview' % i) self.assertEqual("L", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(358, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) self.assertEqual("L", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(358, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) self.assertEqual(512, im.size[0]) self.assertEqual(358, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) self.assertEqual("L", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(358, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) self.assertEqual("L", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(358, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) self.assertEqual(512, im.size[0]) self.assertEqual(358, im.size[1]) def test_hierarchy(self): UploadFolder(_REMOTE, 'Brainix/Epi') UploadFolder(_REMOTE, 'Brainix/Flair') UploadFolder(_REMOTE, 'Knee/T1') UploadFolder(_REMOTE, 'Knee/T2') p = DoGet(_REMOTE, '/patients') s = DoGet(_REMOTE, '/studies') t = DoGet(_REMOTE, '/series') self.assertEqual(2, len(p)) self.assertEqual(2, len(s)) self.assertEqual(4, len(t)) self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' self.assertTrue(brainixPatient in p) self.assertTrue(kneePatient in p) self.assertTrue(brainixStudy in s) self.assertTrue(kneeStudy in s) self.assertTrue(brainixEpi in t) self.assertTrue(brainixFlair in t) self.assertTrue(kneeT1 in t) self.assertTrue(kneeT2 in t) self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) for patient in p: for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): self.assertEqual(patient, study['ParentPatient']) for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): self.assertEqual(study['ID'], series['ParentStudy']) for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): self.assertEqual(series['ID'], instance['ParentSeries']) self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) self.assertEqual(None, r) r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) self.assertEqual('Study', r['Type']) self.assertEqual(kneeStudy, r['ID']) r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) self.assertEqual('Series', r['Type']) self.assertEqual(kneeT1, r['ID']) r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) self.assertEqual(None, r) DropOrthanc(_REMOTE) self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) def test_multiframe(self): i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) self.assertEqual("L", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(512, im.size[1]) DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) def test_changes(self): # Check emptiness c = DoGet(_REMOTE, '/changes') self.assertEqual(0, len(c['Changes'])) self.assertEqual(0, c['Last']) self.assertTrue(c['Done']) c = DoGet(_REMOTE, '/changes?last') self.assertEqual(0, len(c['Changes'])) self.assertEqual(0, c['Last']) self.assertTrue(c['Done']) # Add 1 instance i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] c = DoGet(_REMOTE, '/changes') begin = c['Last'] self.assertEqual(4, len(c['Changes'])) self.assertTrue(c['Done']) self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) c = DoGet(_REMOTE, '/changes?last') self.assertEqual(1, len(c['Changes'])) self.assertEqual(begin, c['Last']) self.assertTrue(c['Done']) c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) self.assertEqual(1, len(c['Changes'])) self.assertEqual(begin, c['Last']) self.assertTrue(c['Done']) c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) self.assertEqual(1, len(c['Changes'])) self.assertEqual(begin - 1, c['Last']) self.assertFalse(c['Done']) c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) self.assertEqual(1, len(c['Changes'])) self.assertEqual(begin - 2, c['Last']) self.assertFalse(c['Done']) UploadFolder(_REMOTE, 'Knee/T1') UploadFolder(_REMOTE, 'Knee/T2') since = begin countPatients = 0 countStudies = 0 countSeries = 0 countInstances = 0 completed = 0 while True: c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) since = c['Last'] for i in c['Changes']: if i['ResourceType'] == 'Instance': countInstances += 1 if i['ResourceType'] == 'Patient': countPatients += 1 if i['ResourceType'] == 'Study': countStudies += 1 if i['ResourceType'] == 'Series': countSeries += 1 if i['ChangeType'] == 'NewInstance': countInstances += 1 if i['ChangeType'] == 'NewPatient': countPatients += 1 if i['ChangeType'] == 'NewStudy': countStudies += 1 if i['ChangeType'] == 'NewSeries': countSeries += 1 if i['ChangeType'] == 'CompletedSeries': completed += 1 self.assertTrue('ID' in i) self.assertTrue('Path' in i) self.assertTrue('Seq' in i) if c['Done']: break self.assertEqual(2 * 50, countInstances) self.assertEqual(2 * 1, countPatients) self.assertEqual(2 * 1, countStudies) self.assertEqual(2 * 2, countSeries) self.assertEqual(0, completed) def test_archive(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) self.assertEqual(2, len(z.namelist())) z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) self.assertEqual(2, len(z.namelist())) z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) self.assertEqual(1, len(z.namelist())) UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) self.assertEqual(2, len(z.namelist())) def test_media_archive(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) self.assertEqual(3, len(z.namelist())) self.assertTrue('IMAGES/IM0' in z.namelist()) self.assertTrue('IMAGES/IM1' in z.namelist()) self.assertTrue('DICOMDIR' in z.namelist()) try: os.remove('/tmp/DICOMDIR') except: # The file does not exist pass z.extract('DICOMDIR', '/tmp') a = subprocess.check_output([ 'dciodvfy', '/tmp/DICOMDIR' ], stderr = subprocess.STDOUT).split('\n') self.assertEqual(3, len(a)) self.assertTrue(a[0].startswith('Warning')) self.assertEqual('BasicDirectory', a[1]) self.assertEqual('', a[2]) a = subprocess.check_output([ 'dcentvfy', '/tmp/DICOMDIR' ], stderr = subprocess.STDOUT).split('\n') self.assertEqual(1, len(a)) self.assertEqual('', a[0]) a = subprocess.check_output([ 'dcm2xml', '/tmp/DICOMDIR' ]) self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) os.remove('/tmp/DICOMDIR') def test_protection(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) a = DoGet(_REMOTE, '/patients')[0] b = DoGet(_REMOTE, '/patients')[1] self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) def test_raw_tags(self): i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] dicom = DoGet(_REMOTE, '/instances/%s/file' % i) self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) s = '/instances/%s/content/' % i self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') for i in DoGet(_REMOTE, '/instances'): aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) def test_raw_tags_mdn(self): # Bug reported by Cyril Paulus i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) def test_modify_instance(self): i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] modified = DoPost(_REMOTE, '/instances/%s/modify' % i, json.dumps({ "Replace" : { "PatientName" : "hello", #"PatientID" : "world" }, "Remove" : [ "StationName" ], "RemovePrivateTags" : None }), 'application/json') j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) def test_modify_series(self): # Upload 4 images from the same series for i in range(4): UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) origSeries = DoGet(_REMOTE, '/series')[0] newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, '{"Replace":{"PatientName":"Jodogne"}}', 'application/json')['ID'] self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] self.assertEqual(4, len(instances)) for i in instances: j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) def test_modify_study(self): # Upload 4 images from the 2 series of the same study for i in range(4): UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) origStudy = DoGet(_REMOTE, '/studies')[0] newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, '{"Replace":{"PatientName":"Jodogne"}}', 'application/json')['ID'] self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] self.assertEqual(2, len(series)) for s in series: ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] for i in instances: j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) def test_anonymize_series(self): # Upload 4 images from the same series for i in range(4): UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) origSeries = DoGet(_REMOTE, '/series')[0] newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, '{}', 'application/json')['ID'] self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] self.assertEqual(4, len(instances)) for i in instances: j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) def test_anonymize_study(self): # Upload 4 images from the 2 series of the same study for i in range(4): UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) origStudy = DoGet(_REMOTE, '/studies')[0] newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, '{"Replace":{"PatientName":"Jodogne"}}', 'application/json')['ID'] self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] self.assertEqual(2, len(series)) for s in series: ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] for i in instances: j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) def test_storescu(self): # Check emptiness e = DoGet(_REMOTE, '/exports') self.assertEqual(0, len(e['Exports'])) self.assertEqual(0, e['Last']) self.assertTrue(e['Done']) e = DoGet(_REMOTE, '/exports?last') self.assertEqual(0, len(e['Exports'])) self.assertEqual(0, e['Last']) self.assertTrue(e['Done']) # Add 1 instance i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) # Export the instance j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) e = DoGet(_REMOTE, '/exports') self.assertEqual(1, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) e = DoGet(_REMOTE, '/exports?limit=1') self.assertEqual(1, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) e = DoGet(_REMOTE, '/exports?last') self.assertEqual(1, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) seqInstance = e['Last'] # Export the series j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') e = DoGet(_REMOTE, '/exports') self.assertEqual(2, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) seqSeries = e['Last'] self.assertNotEqual(seqInstance, seqSeries) e = DoGet(_REMOTE, '/exports?limit=1&since=0') self.assertEqual(1, len(e['Exports'])) self.assertFalse(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) self.assertEqual(1, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) e = DoGet(_REMOTE, '/exports?last') self.assertEqual(1, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) # Export the study j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') seqStudy = DoGet(_REMOTE, '/exports')['Last'] # Export the patient j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) e = DoGet(_REMOTE, '/exports') self.assertEqual(4, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) seqPatient = e['Last'] self.assertNotEqual(seqInstance, seqSeries) self.assertNotEqual(seqSeries, seqStudy) self.assertNotEqual(seqStudy, seqPatient) self.assertTrue(seqInstance < seqSeries) self.assertTrue(seqSeries < seqStudy) self.assertTrue(seqStudy < seqPatient) e = DoGet(_REMOTE, '/exports?limit=1&since=0') self.assertEqual(1, len(e['Exports'])) self.assertFalse(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) self.assertEqual(1, len(e['Exports'])) self.assertFalse(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) self.assertEqual(1, len(e['Exports'])) self.assertFalse(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) self.assertEqual(1, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) e = DoGet(_REMOTE, '/exports?last') self.assertEqual(1, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) # Check the content of the logged information e = DoGet(_REMOTE, '/exports')['Exports'] if 'PatientID' in e[0]: # Since Orthanc 0.8.6 patient = 'PatientID' study = 'StudyInstanceUID' series = 'SeriesInstanceUID' instance = 'SOPInstanceUID' else: # Up to Orthanc 0.8.5 patient = 'PatientId' study = 'StudyInstanceUid' series = 'SeriesInstanceUid' instance = 'SopInstanceUid' for k in range(4): self.assertTrue('Date' in e[k]) self.assertTrue('Seq' in e[k]) self.assertEqual('orthanctest', e[k]['RemoteModality']) self.assertEqual(10, len(e[0])) self.assertEqual('Instance', e[0]['ResourceType']) self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) self.assertEqual('ozp00SjY2xG', e[0][patient]) self.assertEqual(9, len(e[1])) self.assertEqual('Series', e[1]['ResourceType']) self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) self.assertEqual('ozp00SjY2xG', e[1][patient]) self.assertEqual(8, len(e[2])) self.assertEqual('Study', e[2]['ResourceType']) self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) self.assertEqual('ozp00SjY2xG', e[2][patient]) self.assertEqual(7, len(e[3])) self.assertEqual('Patient', e[3]['ResourceType']) self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) self.assertEqual('ozp00SjY2xG', e[3][patient]) DropOrthanc(_REMOTE) self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) def test_store_peer(self): self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) DropOrthanc(_REMOTE) self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) def test_bulk_storescu(self): self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) DropOrthanc(_LOCAL) # Send using patient's UUID self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) def test_color(self): i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] im = GetImage(_REMOTE, '/instances/%s/preview' % i) self.assertEqual("RGB", im.mode) self.assertEqual(41, im.size[0]) self.assertEqual(41, im.size[1]) # http://effbot.org/zone/pil-comparing-images.htm truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) def test_faking_ruby_put(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) a = DoGet(_REMOTE, '/patients')[0] b = DoGet(_REMOTE, '/patients')[1] self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) def test_faking_ruby_delete(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) a = DoGet(_REMOTE, '/patients')[0] b = DoGet(_REMOTE, '/patients')[1] DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) def test_faking_google_put(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) a = DoGet(_REMOTE, '/patients')[0] b = DoGet(_REMOTE, '/patients')[1] self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) def test_faking_google_delete(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) a = DoGet(_REMOTE, '/patients')[0] b = DoGet(_REMOTE, '/patients')[1] DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) def test_lua(self): self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) def test_metadata(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') p = DoGet(_REMOTE, '/patients')[0] i = DoGet(_REMOTE, '/instances')[0] m = DoGet(_REMOTE, '/patients/%s/metadata' % p) self.assertEqual(1, len(m)) self.assertEqual('LastUpdate', m[0]) m = DoGet(_REMOTE, '/instances/%s/metadata' % i) self.assertEqual(3, len(m)) self.assertTrue('IndexInSeries' in m) self.assertTrue('ReceptionDate' in m) self.assertTrue('RemoteAET' in m) # Play with custom metadata DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') m = DoGet(_REMOTE, '/patients/%s/metadata' % p) self.assertEqual(2, len(m)) self.assertTrue('LastUpdate' in m) self.assertTrue('5555' in m) self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) m = DoGet(_REMOTE, '/patients/%s/metadata' % p) self.assertEqual(1, len(m)) self.assertTrue('LastUpdate' in m) def test_statistics(self): # Upload 16 instances for i in range(4): UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) s = DoGet(_REMOTE, '/statistics') self.assertEqual(16, s['CountInstances']) self.assertEqual(2, s['CountPatients']) self.assertEqual(2, s['CountStudies']) self.assertEqual(4, s['CountSeries']) d = int(s['TotalUncompressedSize']) e = 0 for patient in DoGet(_REMOTE, '/patients'): s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) self.assertEqual(8, s['CountInstances']) self.assertEqual(1, s['CountStudies']) self.assertEqual(2, s['CountSeries']) e += int(s['UncompressedSize']) for study in DoGet(_REMOTE, '/studies'): s = DoGet(_REMOTE, '/studies/%s/statistics' % study) self.assertEqual(8, s['CountInstances']) self.assertEqual(2, s['CountSeries']) e += int(s['UncompressedSize']) for series in DoGet(_REMOTE, '/series'): s = DoGet(_REMOTE, '/series/%s/statistics' % series) self.assertEqual(4, s['CountInstances']) e += int(s['UncompressedSize']) self.assertEqual(3 * d, e) def test_custom_attachment(self): UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') patient = DoGet(_REMOTE, '/patients')[0] instance = DoGet(_REMOTE, '/instances')[0] size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) hello = 'hellohellohellohellohellohellohellohellohello' DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) def test_incoming_storescu(self): self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) subprocess.check_call([ 'storescu', _REMOTE['Server'], str(_REMOTE['DicomPort']), GetDatabasePath('ColorTestImageJ.dcm') ]) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) def test_incoming_findscu(self): def CallFindScu(args): p = subprocess.Popen([ 'findscu', '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, stderr=subprocess.PIPE) return p.communicate()[1] UploadInstance(_REMOTE, 'Multiframe.dcm') UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) self.assertEqual(2, len(patientNames)) self.assertTrue('Test Patient BG ' in patientNames) self.assertTrue('Anonymized' in patientNames) i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) self.assertEqual(2, len(series)) self.assertTrue('20070208' in series) self.assertTrue('19980312' in series) i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) self.assertEqual(1, len(series)) # Test the "CaseSentitivePN" flag (false by default) i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) self.assertEqual(1, len(series)) def test_incoming_movescu(self): def CallMoveScu(args): subprocess.check_call([ 'movescu', '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, stderr=subprocess.PIPE) UploadInstance(_REMOTE, 'Multiframe.dcm') self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) def test_findscu(self): i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # Test the "find-patient" level p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) self.assertEqual(1, len(p)) self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) # Test wildcards constraints. The "LO" value representation # for PatientID is always case-sensitive, but the "PN" for # PatientName might depend on the implementation: # "GenerateConfigurationForTests.py" will force it to be case # insensitive (which was the default until Orthanc 0.8.6). p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) self.assertEqual(1, len(p)) p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) self.assertEqual(1, len(p)) p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) self.assertEqual(1, len(p)) p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) self.assertEqual(1, len(p)) p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) self.assertEqual(0, len(p)) p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) self.assertEqual(0, len(p)) p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) self.assertEqual(0, len(p)) DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) self.assertEqual(2, len(p)) # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) self.assertEqual(1, len(s)) self.assertEqual('20070208', s[0]['StudyDate']) # Test range searches t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'StudyDate' : '-20070101' }) self.assertEqual(0, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'StudyDate' : '20090101-' }) self.assertEqual(0, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'StudyDate' : '20070101-' }) self.assertEqual(1, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'StudyDate' : '-20090101' }) self.assertEqual(1, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'StudyDate' : '20070207-20070207' }) self.assertEqual(0, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'StudyDate' : '20070208-20070208' }) self.assertEqual(1, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'StudyDate' : '20070209-20070209' }) self.assertEqual(0, len(t)) # Test the ModalitiesInStudy tag t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'ModalitiesInStudy' : 'US' }) self.assertEqual(0, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'ModalitiesInStudy' : 'CT' }) self.assertEqual(1, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'ModalitiesInStudy' : 'US\\CT' }) self.assertEqual(1, len(t)) # Test the "find-series" level t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { 'PatientID' : 'B9uTHKOZ', 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) self.assertEqual(1, len(t)) # Test "\" separator t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { 'PatientID' : 'B9uTHKOZ', 'StudyInstanceUID' : s[0]['StudyInstanceUID'], 'Modality' : 'MR\\CT\\US' }) self.assertEqual(1, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { 'PatientID' : 'B9uTHKOZ', 'StudyInstanceUID' : s[0]['StudyInstanceUID'], 'Modality' : 'MR\\US' }) self.assertEqual(0, len(t)) def test_update_modalities(self): try: DoDelete(_REMOTE, '/modalities/toto') except: pass try: DoDelete(_REMOTE, '/modalities/tata') except: pass self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) DoDelete(_REMOTE, '/modalities/toto') DoDelete(_REMOTE, '/modalities/tata') self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) def test_update_peers(self): # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v try: DoDelete(_REMOTE, '/peers/toto') except: pass try: DoDelete(_REMOTE, '/peers/tata') except: pass self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) DoDelete(_REMOTE, '/peers/toto') DoDelete(_REMOTE, '/peers/tata') self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) def test_mesterhazy_modification(self): # When I modify a series ( eg. curl # http://localhost:8042/series/uidhere/modify -X POST -d # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified # series is added to a new Study, instead of the existing # Study. Fixed in Orthanc 0.7.5 u = UploadInstance(_REMOTE, 'DummyCT.dcm') study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' modified = DoPost(_REMOTE, '/series/%s/modify' % series, json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) def test_create(self): i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'PatientName' : 'Jodogne', 'Modality' : 'CT', 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA })) self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) self.assertEqual((5, 5), png.size) def test_pilates(self): # "SCU failed error when accessing orthanc with osirix" by # Pilates Agentur (Mar 10, 2014 at 9:33 PM) i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) def test_shared_tags(self): a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] p = DoGet(_REMOTE, '/patients')[0] self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) def test_modules(self): a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] p = DoGet(_REMOTE, '/patients')[0] s = DoGet(_REMOTE, '/studies')[0] t = DoGet(_REMOTE, '/series')[0] self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) def test_auto_directory(self): a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] self.assertTrue('now' in DoGet(_REMOTE, '/tools')) self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) def test_echo(self): DoPost(_REMOTE, '/modalities/orthanctest/echo') def test_xml(self): json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') self.assertEqual(len(items), len(json)) self.assertTrue('dicom-conformance' in json) ok = False for i in items: if i.childNodes[0].data == 'dicom-conformance': ok = True self.assertTrue(ok) def test_issue_16(self): i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] self.assertEqual('0018,1063', t) def test_issue_22(self): s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] a = [ "f804691f62197040438f4627c6b994f1", # Frame 0 "c69eee9a51eea3e8611e82e578897254", "315666be83e2d0111c77bc0996d84901", "3e27aa959d911172c48a1436443c72b1", "958642c9e7e9d232d3869faff546058c", "5e7ea8e3e4230cae707d143481355c59", "eda37f83558d858a596175aed8b2ad47", "486713bd2895c4ecbe0e97715ac7f80a", "091ef729eb169e67da8a0faa9631f9a8", "5aa2b8c7ffe0a483efaa8e12417686ca", "e2f39e85896fe58876654b94cd0b5013", "6fd2129e4950abbe1be053bc814d5da8", "c3331a8ba7a757f3d423735ab7fa81f9", "746f808582156734dd6b6fdfd3a0b72c", "8075ea2b227a70c60ea6b7b75a6bb190", "806b8b3e300c615099c11a5ec23465aa", "7c836aa298ba6eef96434579af631a11", "a0357dc9f4f72d73a885c33d7c287446", "f25ba3be1cc7d7fad95706adc199ea7d", "8b114c526b8cbed6cad8a3248b7b480c", "44e6670f127e612a2b4aa60a0d207698", "b8945f90fe02facf2ace24ca1ecbe0a5", "95c796c2fa8f59018b15cf2987b1f79b", "ce0a51ab30224205b44920221dc27351", # Frame 23 ] self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) for i in range(len(a)): self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) def test_issue_19(self): # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) def test_issue_37(self): # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'CaseSensitive' : True, 'Query' : { 'StationName' : 'SMR4-MP3' }}) self.assertEqual(1, len(a)) def test_rest_find(self): # Upload 8 instances for i in range(2): UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'CaseSensitive' : False, 'Query' : { 'PatientName' : '*n*' }}) self.assertEqual(2, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'CaseSensitive' : True, 'Query' : { 'PatientName' : '*n*' }}) self.assertEqual(0, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, 'Level' : 'Patient', 'CaseSensitive' : False, 'Query' : { 'PatientName' : '*ne*' }}) self.assertEqual(1, len(a)) self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'CaseSensitive' : True, 'Query' : { 'PatientName' : '*ne*' }}) self.assertEqual(0, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'CaseSensitive' : True, 'Query' : { 'PatientName' : '*NE*' }}) self.assertEqual(1, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'CaseSensitive' : True, 'Query' : { 'PatientName' : '*NE*' }}) self.assertEqual(2, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'CaseSensitive' : True, 'Query' : { 'PatientName' : '*NE*' }}) self.assertEqual(4, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) self.assertEqual(2, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) self.assertEqual(2, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) self.assertEqual(4, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) self.assertEqual(8, len(a)) def test_rest_query_retrieve(self): self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) # Upload 8 instances for i in range(2): UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) for p in DoGet(_REMOTE, '/patients'): DoPost(_REMOTE, '/modalities/orthanctest/store', p) DoDelete(_REMOTE, '/patients/%s' % p) for q in DoGet(_REMOTE, '/queries'): DoDelete(_REMOTE, '/queries/%s' % q) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', 'Query' : { 'PatientName' : '*NE*', 'StudyDate' : '*', }})['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) b = DoGet(_REMOTE, '/queries/%s' % a) self.assertTrue('answers' in b) self.assertTrue('level' in b) self.assertTrue('modality' in b) self.assertTrue('query' in b) self.assertTrue('retrieve' in b) self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) self.assertEqual(2, len(q)) self.assertTrue('PatientName' in q) self.assertTrue('StudyDate' in q) self.assertEqual('*NE*', q['PatientName']) self.assertEqual('*', q['StudyDate']) self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) self.assertTrue('content' in s) self.assertTrue('retrieve' in s) s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) self.assertEqual('887', s['PatientID']) self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC') self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, '/queries/%s' % a) self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) def test_parent(self): u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' self.assertEqual(instance, u); a = DoGet(_REMOTE, '/studies/%s/patient' % study) self.assertEqual('Patient', a['Type']) self.assertEqual(patient, a['ID']) a = DoGet(_REMOTE, '/series/%s/patient' % series) self.assertEqual('Patient', a['Type']) self.assertEqual(patient, a['ID']) a = DoGet(_REMOTE, '/series/%s/study' % series) self.assertEqual('Study', a['Type']) self.assertEqual(study, a['ID']) a = DoGet(_REMOTE, '/instances/%s/patient' % instance) self.assertEqual('Patient', a['Type']) self.assertEqual(patient, a['ID']) a = DoGet(_REMOTE, '/instances/%s/study' % instance) self.assertEqual('Study', a['Type']) self.assertEqual(study, a['ID']) a = DoGet(_REMOTE, '/instances/%s/series' % instance) self.assertEqual('Series', a['Type']) self.assertEqual(series, a['ID']) def test_shanon(self): def Anonymize(instance, replacements = {}): return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json') self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] ids = [ 'ozp00SjY2xG', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] a = ExtractDicomTags(Anonymize(u), tags) for i in range(4): self.assertNotEqual(ids[i], a[i]) self.assertTrue(a[4].startswith('Orthanc')) a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) for i in range(4): self.assertNotEqual(ids[i], a[i]) self.assertFalse(a[4].startswith('Orthanc')) a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) self.assertEqual('instance', a[3]) self.assertFalse(a[4].startswith('Orthanc')) a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) self.assertEqual('series', a[2]) self.assertFalse(a[4].startswith('Orthanc')) a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) self.assertEqual('study', a[1]) self.assertFalse(a[4].startswith('Orthanc')) a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) self.assertEqual('patient', a[0]) self.assertFalse(a[4].startswith('Orthanc')) a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', 'StudyInstanceUID' : 'study', 'SeriesInstanceUID' : 'series', 'SOPInstanceUID' : 'instance' }), tags) self.assertEqual('patient', a[0]) self.assertFalse(a[4].startswith('Orthanc')) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) def test_shanon_2(self): def Modify(instance, replacements = {}): return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json') self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] ids = [ 'ozp00SjY2xG', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] a = ExtractDicomTags(Modify(u), tags) self.assertEqual(ids[0], a[0]) self.assertEqual(ids[1], a[1]) self.assertEqual(ids[2], a[2]) self.assertNotEqual(ids[3], a[3]) self.assertEqual(0, len(a[4])) a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) self.assertEqual(ids[0], a[0]) self.assertEqual(ids[1], a[1]) self.assertEqual(ids[2], a[2]) self.assertEqual('instance', a[3]) a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) self.assertEqual(ids[0], a[0]) self.assertEqual(ids[1], a[1]) self.assertEqual('series', a[2]) self.assertNotEqual(ids[3], a[3]) a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) self.assertEqual(ids[0], a[0]) self.assertEqual('study', a[1]) self.assertNotEqual(ids[2], a[2]) self.assertNotEqual(ids[3], a[3]) a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) self.assertEqual('patient', a[0]) self.assertNotEqual(ids[1], a[1]) self.assertNotEqual(ids[2], a[2]) self.assertNotEqual(ids[3], a[3]) a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', 'StudyInstanceUID' : 'study', 'SeriesInstanceUID' : 'series', 'SOPInstanceUID' : 'instance' }), tags) self.assertEqual('patient', a[0]) self.assertEqual('study', a[1]) self.assertEqual('series', a[2]) self.assertEqual('instance', a[3]) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) def test_instances_tags(self): a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) self.assertEqual(2, len(i)) self.assertEqual('887', i[i.keys()[0]]['PatientID']) self.assertEqual('887', i[i.keys()[1]]['PatientID']) i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) self.assertEqual(2, len(i)) self.assertEqual('887', i[i.keys()[0]]['PatientID']) self.assertEqual('887', i[i.keys()[1]]['PatientID']) self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) self.assertEqual(1, len(i)) self.assertEqual('887', i[i.keys()[0]]['PatientID']) i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) self.assertEqual(1, len(i)) self.assertEqual('887', i[i.keys()[0]]['PatientID']) def test_lookup(self): a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') self.assertEqual(0, len(a)) UploadInstance(_REMOTE, 'DummyCT.dcm') a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') self.assertEqual(1, len(a)) self.assertEqual('Patient', a[0]['Type']) self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') self.assertEqual(1, len(a)) self.assertEqual('Study', a[0]['Type']) self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') self.assertEqual(1, len(a)) self.assertEqual('Series', a[0]['Type']) self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') self.assertEqual(1, len(a)) self.assertEqual('Instance', a[0]['Type']) self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) DropOrthanc(_REMOTE) a = DoPost(_REMOTE, '/tools/lookup', '3113719P') self.assertEqual(0, len(a)) def test_autorouting(self): knee1 = 'Knee/T1/IM-0001-0001.dcm' knee2 = 'Knee/T2/IM-0001-0002.dcm' other = 'Brainix/Flair/IM-0001-0001.dcm' # Check that this version is >= 0.8.0 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) UploadInstance(_REMOTE, knee1) self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) DropOrthanc(_REMOTE) DropOrthanc(_LOCAL) InstallLuaScript('Lua/Autorouting.lua') UploadInstance(_REMOTE, knee1) UploadInstance(_REMOTE, knee2) UploadInstance(_REMOTE, other) WaitEmpty(_REMOTE) UninstallLuaCallbacks() self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) DropOrthanc(_REMOTE) DropOrthanc(_LOCAL) InstallLuaScript('Lua/AutoroutingConditional.lua') UploadInstance(_REMOTE, knee1) UploadInstance(_REMOTE, knee2) UploadInstance(_REMOTE, other) WaitEmpty(_REMOTE) UninstallLuaCallbacks() self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) DropOrthanc(_REMOTE) DropOrthanc(_LOCAL) InstallLuaScript('Lua/AutoroutingModification.lua') UploadInstance(_REMOTE, knee1) WaitEmpty(_REMOTE) UninstallLuaCallbacks() i = DoGet(_LOCAL, '/instances') self.assertEqual(1, len(i)) with tempfile.NamedTemporaryFile(delete = True) as f: f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) f.flush() routed = subprocess.check_output([ 'dcm2xml', f.name ]) self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) self.assertEqual(None, re.search('"MilitaryRank"', routed)) self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag def test_storescu_rf(self): i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) def test_anonymize_instance(self): def AnonymizeAndUpload(instanceId, parameters): return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, 'application/json'), 'application/dicom')['ID'] def ModifyAndUpload(instanceId, parameters): return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, 'application/json'), 'application/dicom')['ID'] a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) b = AnonymizeAndUpload(a, '{}') self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) # Keep private tag (only OK since Orthanc 0.8.0) b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) # Examples from the Wiki b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null}') self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": null}') self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"}}') self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) # Test modify non-existing i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'PatientName' : 'Jodogne', 'Modality' : 'CT', }))['ID'] self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) def test_incoming_jpeg(self): def storescu(): with open(os.devnull, 'w') as FNULL: subprocess.check_call([ 'storescu', '-xs', _REMOTE['Server'], str(_REMOTE['DicomPort']), GetDatabasePath('Knix/Loc/IM-0001-0001.dcm') ], stderr = FNULL) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) InstallLuaScript('Lua/TransferSyntaxDisable.lua') self.assertRaises(Exception, storescu) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) InstallLuaScript('Lua/TransferSyntaxEnable.lua') storescu() self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) def test_storescu_jpeg(self): self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) DropOrthanc(_REMOTE) self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) def test_pixel_data(self): jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] phenixSize = 358 * 512 * 2 colorSize = 1000 * 1000 * 3 jpegSize = 51918 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) def test_decode_brainix(self): brainix = [ UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) ] h = '6fb11b932d535c2be04beabd99793ff8' maxValue = 426.0 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) for i in brainix: self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) truth2 = map(lambda x: min(255, x), truth.getdata()) for i in brainix: self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) for i in brainix: self.AssertSameImages(truth2, '/instances/%s/preview' % i) for i in brainix: self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) def test_decode_color(self): imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] for i in [ imagej, color ]: for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) def test_decode_rf(self): rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) def test_decode_multiframe(self): mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] # Test the first frame truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) # Test the last frame truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) def test_decode_signed(self): signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] minValue = -2000 maxValue = 4042 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) truth3 = map(lambda x: 255 if x >= 256 else x, truth2) self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) self.AssertSameImages(tmp, '/instances/%s/preview' % signed) self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) def test_issue_32(self): f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) self.assertEqual(u'Рентгенография', tags['SeriesDescription']) self.assertEqual(u'Таз', tags['BodyPartExamined']) self.assertEqual(u'Прямая', tags['ViewPosition']) def test_encodings(self): # Latin-1 (ISO_IR 100) brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) # Latin-2 (ISO_IR 101) a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - self.assertEqual('Imię i Nazwisko osoby opisującej', i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) def test_storescu_custom_aet(self): # This tests a feature introduced in Orthanc 0.9.1: "Custom # setting of the local AET during C-Store SCU (both in Lua and # in the REST API)." # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') j = DoPost(_REMOTE, '/modalities/orthanctest/store', { 'LocalAet' : 'YOP', 'Resources' : [ a['ID'], b['ID'] ] }) self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) DropOrthanc(_LOCAL) self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) j = DoPost(_REMOTE, '/modalities/orthanctest/store', { 'Resources' : [ c['ID'] ] }) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) DropOrthanc(_REMOTE) DropOrthanc(_LOCAL) InstallLuaScript('Lua/AutoroutingChangeAet.lua') DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') WaitEmpty(_REMOTE) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') WaitEmpty(_REMOTE) self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) def test_resources_since_limit(self): # Upload 16 instances for i in range(4): UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) for limit in [ 1, 2, 3, 7, 16, 17 ]: s = {} since = 0 while True: t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) if len(t) == 0: break since += len(t) for i in t: s[i] = None self.assertEqual(16, len(s)) for instance in DoGet(_REMOTE, '/instances'): self.assertTrue(instance in s) def test_create_pdf(self): # Upload 4 instances brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: pdf = f.read() i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Tags' : { 'PatientName' : 'Jodogne', 'Modality' : 'CT', }, 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) })) self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) self.assertEqual(len(b), len(pdf) + 1) self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Parent' : brainixPatient, 'Tags' : { 'PatientName' : 'Jodogne', } }))) i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Parent' : brainixPatient, 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) })) self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Parent' : brainixStudy, 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) })) self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Parent' : brainixEpi, 'Tags' : { }, 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) })) self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) self.assertEqual(len(b), len(pdf)) self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance))