Mercurial > hg > orthanc-tests
view Tests/Tests.py @ 611:09fc76fbd46d
Added tag Orthanc-1.12.3 for changeset ec657d1a62a6
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Wed, 31 Jan 2024 13:51:40 +0100 |
| parents | 0700fe8e2b78 |
| children | 9c295b8dac00 |
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#!/usr/bin/env python # -*- coding: utf-8 -*- # Orthanc - A Lightweight, RESTful DICOM Store # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics # Department, University Hospital of Liege, Belgium # Copyright (C) 2017-2023 Osimis S.A., Belgium # Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium # # This program is free software: you can redistribute it and/or # modify it under the terms of the GNU General Public License as # published by the Free Software Foundation, either version 3 of the # License, or (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see <http://www.gnu.org/licenses/>. import base64 import bz2 import copy import io import numpy import pprint import shutil import tempfile import unittest import time import os from PIL import ImageChops from Toolbox import * from xml.dom import minidom from datetime import datetime _LOCAL = None _REMOTE = None _DOCKER = False def SetOrthancParameters(local, remote, withinDocker): global _LOCAL, _REMOTE, _DOCKER _LOCAL = local _REMOTE = remote _DOCKER = withinDocker def ExtractDicomTags(rawDicom, tags): with tempfile.NamedTemporaryFile(delete = True) as f: f.write(rawDicom) f.flush() data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) result = [] for tag in tags: match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) if match == None: result.append('') else: result.append(match.group(1)) return result def CompareLists(a, b): if len(a) != len(b): return False for i in range(len(a)): d = a[i] - b[i] if abs(d) >= 0.51: # Add some tolerance for rounding errors return False return True def CompareTags(a, b, tagsToIgnore): for i in tagsToIgnore: if i in a: del a[i] if i in b: del b[i] if a.keys() == b.keys(): return True else: print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) return False def CallFindScu(args): p = subprocess.Popen([ FindExecutable('findscu'), '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, stderr=subprocess.PIPE) return p.communicate()[1] def GetMoveScuCommand(): return [ FindExecutable('movescu'), '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) _REMOTE['Server'], str(_REMOTE['DicomPort']) ] def IsDicomUntilPixelDataStored(orthanc): # This function detects whether the "StorageCompression" option is # "true", OR the storage area does not support read-range if IsOrthancVersionAbove(orthanc, 1, 9, 1): i = UploadInstance(orthanc, 'ColorTestMalaterre.dcm') ['ID'] a = DoGet(orthanc, '/instances/%s/metadata/PixelDataOffset' % i) if a != 0x03a0: raise Exception('Internal error') a = DoGet(orthanc, '/instances/%s/attachments' % i) if len(a) != 1 and len(a) != 2 or not 'dicom' in a: raise Exception('Internal error') DoDelete(orthanc, '/instances/%s' % i) if len(a) == 1: return False elif 'dicom-until-pixel-data' in a: return True else: raise Exception('Internal error') else: return False def CallMoveScu(args): try: subprocess.check_call(GetMoveScuCommand() + args, stderr = subprocess.PIPE) except subprocess.CalledProcessError as e: # The error code "69" corresponds to "EXITCODE_CMOVE_ERROR", # that has been introduced in DCMTK 3.6.2. This error code is # expected by some tests that try and C-MOVE non-existing # DICOM instances. # https://groups.google.com/d/msg/orthanc-users/DCRc5NeSCbM/DG-pSWj-BwAJ if e.returncode != 69: raise e def GenerateTestSequence(): return [ { 'StudyDescription': 'Hello^', 'ReferencedStudySequence' : [ { 'StudyDescription': 'Toto', }, { 'StudyDescription': 'Tata', }, ] }, { 'StudyDescription': 'Sébastien^', 'StudyDate' : '19700202', } ] class Orthanc(unittest.TestCase): def setUp(self): if (sys.version_info >= (3, 0)): # Remove annoying warnings about unclosed socket in Python 3 import warnings warnings.simplefilter("ignore", ResourceWarning) print('running : %s' % self.id()) DropOrthanc(_LOCAL) DropOrthanc(_REMOTE) UninstallLuaCallbacks(_REMOTE) # Reset stuff possibly set by some integration tests DoPut(_REMOTE, '/tools/default-encoding', 'Latin1') if IsOrthancVersionAbove(_REMOTE, 1, 9, 0): DoPut(_REMOTE, '/tools/accepted-transfer-syntaxes', [ '1.2.840.10008.1.*' ]) DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', '0') for i in [ 'toto', 'tata' ]: if i in DoGet(_REMOTE, '/modalities'): DoDelete(_REMOTE, '/modalities/%s' % i) if i in DoGet(_REMOTE, '/peers'): DoDelete(_REMOTE, '/peers/%s' % i) #print("%s: In test %s" % (datetime.now(), self._testMethodName)) def AssertSameImages(self, truth, url): im = GetImage(_REMOTE, url) self.assertTrue(CompareLists(truth, im.getdata())) def test_system(self): self.assertTrue('Version' in DoGet(_REMOTE, '/system')) self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) systemInfo = DoGet(_REMOTE, '/system') if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): self.assertIn("MainDicomTags", systemInfo) self.assertIn("Patient", systemInfo["MainDicomTags"]) self.assertIn("Study", systemInfo["MainDicomTags"]) self.assertIn("Series", systemInfo["MainDicomTags"]) self.assertIn("Instance", systemInfo["MainDicomTags"]) if IsOrthancVersionAbove(_REMOTE, 1, 12, 0): self.assertIn("UserMetadata", systemInfo) self.assertEqual(1098, systemInfo['UserMetadata']['my-metadata'] ) if systemInfo["Version"] == "mainline": print("Skipping version checks since you're currently in mainline") return if not IsOrthancVersionAbove(_LOCAL, 0, 8, 7): self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) def test_upload(self): self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) sizeDummyCT = 2472 sizeOverwrite = 2476 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' # This file has *no* pixel data => "dicom-until-pixel-data" is not created u = UploadInstance(_REMOTE, 'DummyCT.dcm') isCompressed = (DoGet(_REMOTE, '/instances/%s/attachments/dicom/is-compressed' % u['ID']) != 0) self.assertEqual(instance, u['ID']) self.assertEqual('Success', u['Status']) if True: # New test for Orthanc 1.4.3 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-until-pixel-data' % instance)) j = 0 else: self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-until-pixel-data' % instance)) j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) if IsOrthancVersionAbove(_REMOTE, 1, 10, 0): attachmentInfo = DoGet(_REMOTE, '/instances/%s/attachments/dicom/info' % instance) if isCompressed: self.assertGreater(sizeDummyCT, attachmentInfo['CompressedSize']) else: self.assertEqual(sizeDummyCT, attachmentInfo['CompressedSize']) self.assertEqual(sizeDummyCT, attachmentInfo['UncompressedSize']) self.assertIn('Uuid', attachmentInfo) self.assertEqual(1, attachmentInfo['ContentType']) s = sizeDummyCT + j if isCompressed: self.assertGreater(s, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) else: self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) u = UploadInstance(_REMOTE, 'DummyCT.dcm') self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) if isCompressed: self.assertGreater(s, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) else: self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) self.assertEqual('20070101', i['StudyDate']) self.assertEqual('KNIX', i['PatientName']) if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): # Overwriting self.assertEqual('Success', u['Status']) else: self.assertEqual('AlreadyStored', u['Status']) u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): # Overwriting self.assertEqual('Success', u['Status']) if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): j2 = 0 else: j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) self.assertNotEqual(j, j2) s2 = sizeOverwrite + j2 self.assertNotEqual(s, s2) if isCompressed: self.assertGreater(s2, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) else: self.assertEqual(s2, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) self.assertEqual(s2, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) self.assertEqual('ANOTHER', i['PatientName']) else: self.assertEqual('AlreadyStored', u['Status']) self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) self.assertEqual(s, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) def test_upload_2(self): i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] instance = DoGet(_REMOTE, '/instances/%s' % i) self.assertEqual(i, instance['ID']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', instance['MainDicomTags']['SOPInstanceUID']) series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', series['MainDicomTags']['SeriesInstanceUID']) study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', study['MainDicomTags']['StudyInstanceUID']) patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) self.assertEqual('ozp00SjY2xG', patient['MainDicomTags']['PatientID']) dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) self.assertEqual(2472, len(dicom)) self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) def test_images(self): i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) im = GetImage(_REMOTE, '/instances/%s/preview' % i) self.assertEqual("L", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(358, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) self.assertEqual("L", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(358, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) self.assertEqual(512, im.size[0]) self.assertEqual(358, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) self.assertEqual("L", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(358, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) self.assertEqual("L", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(358, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) self.assertEqual(512, im.size[0]) self.assertEqual(358, im.size[1]) # This is Little Endian Explicit self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) def test_images_implicit_vr(self): if IsOrthancVersionAbove(_REMOTE, 1, 10, 2): i = UploadInstance(_REMOTE, 'Implicit-vr-us-palette.dcm')['ID'] im = GetImage(_REMOTE, '/instances/%s/preview' % i) self.assertEqual("RGB", im.mode) self.assertEqual(800, im.size[0]) self.assertEqual(600, im.size[1]) def test_hierarchy(self): UploadFolder(_REMOTE, 'Brainix/Epi') UploadFolder(_REMOTE, 'Brainix/Flair') UploadFolder(_REMOTE, 'Knee/T1') UploadFolder(_REMOTE, 'Knee/T2') p = DoGet(_REMOTE, '/patients') s = DoGet(_REMOTE, '/studies') t = DoGet(_REMOTE, '/series') self.assertEqual(2, len(p)) self.assertEqual(2, len(s)) self.assertEqual(4, len(t)) self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' self.assertTrue(brainixPatient in p) self.assertTrue(kneePatient in p) self.assertTrue(brainixStudy in s) self.assertTrue(kneeStudy in s) self.assertTrue(brainixEpi in t) self.assertTrue(brainixFlair in t) self.assertTrue(kneeT1 in t) self.assertTrue(kneeT2 in t) self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) for patient in p: for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): self.assertEqual(patient, study['ParentPatient']) for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): self.assertEqual(study['ID'], series['ParentStudy']) self.assertEqual('Unknown', series['Status']) for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): self.assertEqual(series['ID'], instance['ParentSeries']) if not IsOrthancVersionAbove(_REMOTE, 1, 9, 1): # The "dicom-as-json" attachment was removed in Orthanc 1.9.1 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) self.assertEqual(None, r) r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) self.assertEqual('Study', r['Type']) self.assertEqual(kneeStudy, r['ID']) r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) self.assertEqual('Series', r['Type']) self.assertEqual(kneeT1, r['ID']) r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) self.assertEqual(None, r) DropOrthanc(_REMOTE) self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) def test_delete_cascade(self): # make sure deleting the last instance of a study deletes the series, study and patient self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) # make sure orthanc is empty when starting the test a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) DoDelete(_REMOTE, '/instances/%s' % a) self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) def test_multiframe(self): i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) self.assertEqual("L", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(512, im.size[1]) DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) def test_changes(self): # Check emptiness c = DoGet(_REMOTE, '/changes') self.assertEqual(0, len(c['Changes'])) #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 self.assertTrue(c['Done']) c = DoGet(_REMOTE, '/changes?last') self.assertEqual(0, len(c['Changes'])) #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 self.assertTrue(c['Done']) # Add 1 instance i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] c = DoGet(_REMOTE, '/changes') begin = c['Last'] self.assertEqual(4, len(c['Changes'])) self.assertTrue(c['Done']) self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) # Check the order in which the creation events are reported self.assertEqual(c['Changes'][0]['ChangeType'], 'NewInstance') self.assertEqual(c['Changes'][1]['ChangeType'], 'NewSeries') self.assertEqual(c['Changes'][2]['ChangeType'], 'NewStudy') self.assertEqual(c['Changes'][3]['ChangeType'], 'NewPatient') c = DoGet(_REMOTE, '/changes?last') self.assertEqual(1, len(c['Changes'])) self.assertEqual(begin, c['Last']) self.assertTrue(c['Done']) c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) self.assertEqual(1, len(c['Changes'])) self.assertEqual(begin, c['Last']) self.assertTrue(c['Done']) c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) self.assertEqual(1, len(c['Changes'])) self.assertEqual(begin - 1, c['Last']) self.assertFalse(c['Done']) c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) self.assertEqual(1, len(c['Changes'])) self.assertEqual(begin - 2, c['Last']) self.assertFalse(c['Done']) UploadFolder(_REMOTE, 'Knee/T1') UploadFolder(_REMOTE, 'Knee/T2') since = begin countPatients = 0 countStudies = 0 countSeries = 0 countInstances = 0 completed = 0 while True: c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 1000 }) since = c['Last'] for i in c['Changes']: # We have set StableAge to 1 -> we might have StabeStudy but this is not sure -> detect only the 'New' events if i['ResourceType'] == 'Instance' and i['ChangeType'] == 'NewInstance': countInstances += 1 if i['ResourceType'] == 'Patient' and i['ChangeType'] == 'NewPatient': countPatients += 1 if i['ResourceType'] == 'Study' and i['ChangeType'] == 'NewStudy': countStudies += 1 if i['ResourceType'] == 'Series' and i['ChangeType'] == 'NewSeries': countSeries += 1 if i['ChangeType'] == 'CompletedSeries': completed += 1 self.assertTrue('ID' in i) self.assertTrue('Path' in i) self.assertTrue('Seq' in i) if c['Done']: break # we count only the events since before the upload of 2 Knee series ! self.assertEqual(50, countInstances) self.assertEqual(1, countPatients) self.assertEqual(1, countStudies) self.assertEqual(2, countSeries) self.assertEqual(0, completed) def test_archive(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' kneeStudy = DoGet(_REMOTE, '/studies')[0] kneeSeries = DoGet(_REMOTE, '/series')[0] z = GetArchive(_REMOTE, '/patients/%s/archive' % kneePatient) self.assertEqual(2, len(z.namelist())) self.assertIn('887 KNEE/A10003245599 IRM DU GENOU/MR T1W_aTSE/MR000000.dcm', z.namelist()) z = GetArchive(_REMOTE, '/studies/%s/archive' % kneeStudy) self.assertEqual(2, len(z.namelist())) self.assertIn('887 KNEE/A10003245599 IRM DU GENOU/MR T1W_aTSE/MR000000.dcm', z.namelist()) z = GetArchive(_REMOTE, '/series/%s/archive' % kneeSeries) self.assertEqual(1, len(z.namelist())) self.assertIn('887 KNEE/A10003245599 IRM DU GENOU/MR T1W_aTSE/MR000000.dcm', z.namelist()) UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' z = GetArchive(_REMOTE, '/patients/%s/archive' % kneePatient) self.assertEqual(2, len(z.namelist())) # archive with 2 patients z = PostArchive(_REMOTE, '/tools/create-archive', { 'Resources' : [ brainixPatient, kneePatient ] }) self.assertEqual(3, len(z.namelist())) self.assertIn('5Yp0E BRAINIX/0 IRM crbrale neurocrne/MR sT2WFLAIR/MR000000.dcm', z.namelist()) self.assertIn('887 KNEE/A10003245599 IRM DU GENOU/MR T1W_aTSE/MR000000.dcm', z.namelist()) z = PostArchive(_REMOTE, '/patients/%s/archive' % kneePatient, { 'Synchronous' : True }) self.assertEqual(2, len(z.namelist())) # archive with 2 studies z = PostArchive(_REMOTE, '/tools/create-archive', { 'Resources' : [ brainixStudy, kneeStudy ] }) self.assertEqual(3, len(z.namelist())) self.assertIn('5Yp0E BRAINIX/0 IRM crbrale neurocrne/MR sT2WFLAIR/MR000000.dcm', z.namelist()) self.assertIn('887 KNEE/A10003245599 IRM DU GENOU/MR T1W_aTSE/MR000000.dcm', z.namelist()) # archive with 1 patient & 1 study z = PostArchive(_REMOTE, '/tools/create-archive', { 'Resources' : [ brainixPatient, kneeStudy ] }) self.assertEqual(3, len(z.namelist())) self.assertIn('5Yp0E BRAINIX/0 IRM crbrale neurocrne/MR sT2WFLAIR/MR000000.dcm', z.namelist()) self.assertIn('887 KNEE/A10003245599 IRM DU GENOU/MR T1W_aTSE/MR000000.dcm', z.namelist()) def test_archive_with_patient_ids_collision(self): if IsOrthancVersionAbove(_REMOTE, 1, 12, 2): # one PatientID: COMMON # 2 PatientName: HELLO & WORLD hello = UploadInstance(_REMOTE, 'PatientIdsCollision/Image1.dcm') world = UploadInstance(_REMOTE, 'PatientIdsCollision/Image2.dcm') helloStudy = hello['ParentStudy'] worldStudy = world['ParentStudy'] helloPatient = hello['ParentPatient'] worldPatient = world['ParentPatient'] self.assertEqual(helloPatient, worldPatient) # when downloading the Patient, we do not really know what PatientName we will get in the zip z = GetArchive(_REMOTE, '/patients/%s/archive' % helloPatient) self.assertEqual(2, len(z.namelist())) # when downloading studies individually, we want to have the PatientName that appears in the study z = GetArchive(_REMOTE, '/studies/%s/archive' % helloStudy) self.assertEqual(1, len(z.namelist())) self.assertIn('COMMON HELLO/HELLO SERIES/Unknown Series/00000000.dcm', z.namelist()) z = GetArchive(_REMOTE, '/studies/%s/archive' % worldStudy) self.assertEqual(1, len(z.namelist())) self.assertIn('COMMON WORLD/WORLD SERIES/Unknown Series/00000000.dcm', z.namelist()) def test_media_archive(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) self.assertEqual(3, len(z.namelist())) self.assertTrue('IMAGES/IM0' in z.namelist()) self.assertTrue('IMAGES/IM1' in z.namelist()) self.assertTrue('DICOMDIR' in z.namelist()) try: os.remove('/tmp/DICOMDIR') except: # The file does not exist pass z.extract('DICOMDIR', '/tmp') a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], stderr = subprocess.STDOUT).split('\n') self.assertEqual(3, len(a)) self.assertTrue(a[0].startswith('Warning')) self.assertEqual('BasicDirectory', a[1]) self.assertEqual('', a[2]) a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], stderr = subprocess.STDOUT).split('\n') self.assertEqual(1, len(a)) self.assertEqual('', a[0]) a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) os.remove('/tmp/DICOMDIR') def test_protection(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) a = DoGet(_REMOTE, '/patients')[0] b = DoGet(_REMOTE, '/patients')[1] self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) def test_raw_tags(self): i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] dicom = DoGet(_REMOTE, '/instances/%s/file' % i) self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) s = '/instances/%s/content/' % i self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') for i in DoGet(_REMOTE, '/instances'): aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) def test_raw_tags_mdn(self): # Bug reported by Cyril Paulus i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) def test_modify_instance(self): i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] modified = DoPost(_REMOTE, '/instances/%s/modify' % i, json.dumps({ "Replace" : { "PatientName" : "hello", #"PatientID" : "world" }, "Remove" : [ "StationName" ], "RemovePrivateTags" : True }), 'application/json') j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) def test_modify_series(self): # Upload 4 images from the same series for i in range(4): UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) origSeries = DoGet(_REMOTE, '/series')[0] newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, '{"Replace":{"PatientName":"Jodogne"}}', 'application/json')['ID'] self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] self.assertEqual(4, len(instances)) for i in instances: j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) def test_modify_study(self): # Upload 4 images from the 2 series of the same study for i in range(4): UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) origStudy = DoGet(_REMOTE, '/studies')[0] newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, '{"Replace":{"PatientName":"Jodogne"}}', 'application/json')['ID'] self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] self.assertEqual(2, len(series)) for s in series: ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] for i in instances: j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) def test_anonymize_series(self): # Upload 4 images from the same series for i in range(4): UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) origSeries = DoGet(_REMOTE, '/series')[0] newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, '{}', 'application/json')['ID'] self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] self.assertEqual(4, len(instances)) for i in instances: j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) def test_anonymize_study(self): # Upload 4 images from the 2 series of the same study for i in range(4): UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) origStudy = DoGet(_REMOTE, '/studies')[0] newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, '{"Replace":{"PatientName":"Jodogne"}}', 'application/json')['ID'] self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] self.assertEqual(2, len(series)) for s in series: ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] for i in instances: j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) def test_storescu(self): # Check emptiness e = DoGet(_REMOTE, '/exports') self.assertEqual(0, len(e['Exports'])) self.assertEqual(0, e['Last']) self.assertTrue(e['Done']) e = DoGet(_REMOTE, '/exports?last') self.assertEqual(0, len(e['Exports'])) self.assertEqual(0, e['Last']) self.assertTrue(e['Done']) # Add 1 instance i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) # Export the instance j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) e = DoGet(_REMOTE, '/exports') self.assertEqual(1, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) e = DoGet(_REMOTE, '/exports?limit=1') self.assertEqual(1, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) e = DoGet(_REMOTE, '/exports?last') self.assertEqual(1, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) seqInstance = e['Last'] # Export the series j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') e = DoGet(_REMOTE, '/exports') self.assertEqual(2, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) seqSeries = e['Last'] self.assertNotEqual(seqInstance, seqSeries) e = DoGet(_REMOTE, '/exports?limit=1&since=0') self.assertEqual(1, len(e['Exports'])) self.assertFalse(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) self.assertEqual(1, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) e = DoGet(_REMOTE, '/exports?last') self.assertEqual(1, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) # Export the study j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') seqStudy = DoGet(_REMOTE, '/exports')['Last'] # Export the patient j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) e = DoGet(_REMOTE, '/exports') self.assertEqual(4, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) seqPatient = e['Last'] self.assertNotEqual(seqInstance, seqSeries) self.assertNotEqual(seqSeries, seqStudy) self.assertNotEqual(seqStudy, seqPatient) self.assertTrue(seqInstance < seqSeries) self.assertTrue(seqSeries < seqStudy) self.assertTrue(seqStudy < seqPatient) e = DoGet(_REMOTE, '/exports?limit=1&since=0') self.assertEqual(1, len(e['Exports'])) self.assertFalse(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) self.assertEqual(1, len(e['Exports'])) self.assertFalse(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) self.assertEqual(1, len(e['Exports'])) self.assertFalse(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) self.assertEqual(1, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) e = DoGet(_REMOTE, '/exports?last') self.assertEqual(1, len(e['Exports'])) self.assertTrue(e['Done']) self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) # Check the content of the logged information e = DoGet(_REMOTE, '/exports')['Exports'] if 'PatientID' in e[0]: # Since Orthanc 0.8.6 patient = 'PatientID' study = 'StudyInstanceUID' series = 'SeriesInstanceUID' instance = 'SOPInstanceUID' else: # Up to Orthanc 0.8.5 patient = 'PatientId' study = 'StudyInstanceUid' series = 'SeriesInstanceUid' instance = 'SopInstanceUid' for k in range(4): self.assertTrue('Date' in e[k]) self.assertTrue('Seq' in e[k]) self.assertEqual('orthanctest', e[k]['RemoteModality']) self.assertEqual(10, len(e[0])) self.assertEqual('Instance', e[0]['ResourceType']) self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) self.assertEqual('ozp00SjY2xG', e[0][patient]) self.assertEqual(9, len(e[1])) self.assertEqual('Series', e[1]['ResourceType']) self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) self.assertEqual('ozp00SjY2xG', e[1][patient]) self.assertEqual(8, len(e[2])) self.assertEqual('Study', e[2]['ResourceType']) self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) self.assertEqual('ozp00SjY2xG', e[2][patient]) self.assertEqual(7, len(e[3])) self.assertEqual('Patient', e[3]['ResourceType']) self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) self.assertEqual('ozp00SjY2xG', e[3][patient]) DropOrthanc(_REMOTE) self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) def test_store_peer(self): self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) DropOrthanc(_REMOTE) self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) def test_bulk_storescu(self): self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) DropOrthanc(_LOCAL) # Send using patient's UUID self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) def test_color(self): i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] im = GetImage(_REMOTE, '/instances/%s/preview' % i) self.assertEqual("RGB", im.mode) self.assertEqual(41, im.size[0]) self.assertEqual(41, im.size[1]) # http://effbot.org/zone/pil-comparing-images.htm truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) def test_faking_ruby_put(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) a = DoGet(_REMOTE, '/patients')[0] b = DoGet(_REMOTE, '/patients')[1] self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) def test_faking_ruby_delete(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) a = DoGet(_REMOTE, '/patients')[0] b = DoGet(_REMOTE, '/patients')[1] DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) def test_faking_google_put(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) a = DoGet(_REMOTE, '/patients')[0] b = DoGet(_REMOTE, '/patients')[1] self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) def test_faking_google_delete(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) a = DoGet(_REMOTE, '/patients')[0] b = DoGet(_REMOTE, '/patients')[1] DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) def test_lua(self): self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) def test_metadata(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') p = DoGet(_REMOTE, '/patients')[0] i = DoGet(_REMOTE, '/instances')[0] series = DoGet(_REMOTE, '/series')[0] m = DoGet(_REMOTE, '/patients/%s/metadata' % p) if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): self.assertEqual(2, len(m)) self.assertTrue('MainDicomTagsSignature' in m) else: self.assertEqual(1, len(m)) self.assertTrue('LastUpdate' in m) # The lines below failed on Orthanc <= 1.8.2 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/studies/%s/metadata' % p)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/series/%s/metadata' % p)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata' % p)) m = DoGet(_REMOTE, '/studies/%s/metadata' % DoGet(_REMOTE, '/studies')[0]) if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): self.assertEqual(2, len(m)) self.assertTrue('MainDicomTagsSignature' in m) else: self.assertEqual(1, len(m)) self.assertTrue('LastUpdate' in m) m = DoGet(_REMOTE, '/series/%s/metadata' % series) if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): self.assertEqual(3, len(m)) self.assertTrue('MainDicomTagsSignature' in m) else: self.assertEqual(2, len(m)) self.assertTrue('LastUpdate' in m) # New in Orthanc 1.9.0 self.assertTrue('RemoteAET' in m) self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/RemoteAET' % series), '') # None, received by REST API m = DoGet(_REMOTE, '/instances/%s/metadata' % i) if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): self.assertEqual(10, len(m)) elif IsOrthancVersionAbove(_REMOTE, 1, 9, 1): self.assertEqual(9, len(m)) else: self.assertEqual(8, len(m)) if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): self.assertTrue('MainDicomTagsSignature' in m) if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): self.assertTrue('PixelDataOffset' in m) # New in Orthanc 1.9.1 self.assertEqual(int(DoGet(_REMOTE, '/instances/%s/metadata/PixelDataOffset' % i)), 0x0c78) self.assertTrue('IndexInSeries' in m) self.assertTrue('ReceptionDate' in m) self.assertTrue('RemoteAET' in m) self.assertTrue('Origin' in m) self.assertTrue('TransferSyntax' in m) self.assertTrue('SopClassUid' in m) self.assertTrue('RemoteIP' in m) self.assertTrue('HttpUsername' in m) self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') # Play with custom metadata (headers, body) = DoPutRaw(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') self.assertEqual('200', headers['status']) self.assertEqual('', body) if IsOrthancVersionAbove(_REMOTE, 1, 9, 2): self.assertEqual('"0-%s"' % ComputeMD5('coucou'), headers['etag']) else: self.assertFalse('ETag' in headers) self.assertFalse('etag' in headers) m = DoGet(_REMOTE, '/patients/%s/metadata' % p) if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): self.assertEqual(3, len(m)) self.assertTrue('MainDicomTagsSignature' in m) else: self.assertEqual(2, len(m)) self.assertTrue('LastUpdate' in m) self.assertTrue('5555' in m) self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) if IsOrthancVersionAbove(_REMOTE, 1, 9, 2): DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello', headers = { 'If-Match' : headers['etag'] }) else: DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') (headers, body) = DoGetRaw(_REMOTE, '/patients/%s/metadata/5555' % p) self.assertEqual('200', headers['status']) self.assertEqual('hello', body) if IsOrthancVersionAbove(_REMOTE, 1, 9, 2): DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p, headers = { 'If-Match' : headers['etag'] }) else: DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) m = DoGet(_REMOTE, '/patients/%s/metadata' % p) if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): self.assertEqual(2, len(m)) self.assertTrue('MainDicomTagsSignature' in m) else: self.assertEqual(1, len(m)) self.assertTrue('LastUpdate' in m) def test_statistics(self): # Upload 16 instances for i in range(4): UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) s = DoGet(_REMOTE, '/statistics') self.assertEqual(16, s['CountInstances']) self.assertEqual(2, s['CountPatients']) self.assertEqual(2, s['CountStudies']) self.assertEqual(4, s['CountSeries']) d = int(s['TotalUncompressedSize']) e = 0 for patient in DoGet(_REMOTE, '/patients'): s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) self.assertEqual(8, s['CountInstances']) self.assertEqual(1, s['CountStudies']) self.assertEqual(2, s['CountSeries']) e += int(s['UncompressedSize']) for study in DoGet(_REMOTE, '/studies'): s = DoGet(_REMOTE, '/studies/%s/statistics' % study) self.assertEqual(8, s['CountInstances']) self.assertEqual(2, s['CountSeries']) e += int(s['UncompressedSize']) for series in DoGet(_REMOTE, '/series'): s = DoGet(_REMOTE, '/series/%s/statistics' % series) self.assertEqual(4, s['CountInstances']) e += int(s['UncompressedSize']) self.assertEqual(3 * d, e) def test_custom_attachment(self): u = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') ['ID'] patient = DoGet(_REMOTE, '/patients')[0] instance = DoGet(_REMOTE, '/instances')[0] size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): if IsDicomUntilPixelDataStored(_REMOTE): self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) self.assertTrue('dicom-until-pixel-data' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) # New in Orthanc 1.10.0 a = DoGet(_REMOTE, '/instances/%s/attachments?full' % instance) self.assertEqual(2, len(a)) self.assertEqual(1, a['dicom']) self.assertEqual(3, a['dicom-until-pixel-data']) else: self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) # New in Orthanc 1.10.0 a = DoGet(_REMOTE, '/instances/%s/attachments?full' % instance) self.assertEqual(1, len(a)) self.assertEqual(1, a['dicom']) else: self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) # New in Orthanc 1.10.0 self.assertRaises(Exception, lambda: DoGet( _REMOTE, '/instances/%s/attachments?full' % instance)) self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) hello = 'hellohellohellohellohellohellohellohellohello' DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2', headers = { 'If-Match' : '0-%s' % ComputeMD5('world'), }) (headers, body) = DoGetRaw(_REMOTE, '/patients/%s/attachments/1026/data' % patient) self.assertEqual('200', headers['status']) self.assertEqual('world2', body) self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient, headers = { 'If-Match' : '0-%s' % ComputeMD5(hello), }) self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) if IsOrthancVersionAbove(_REMOTE, 1, 9, 2): DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient, headers = { 'If-Match' : headers['etag'] }) else: self.assertFalse('etag' in headers) DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) def test_incoming_storescu(self): self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) subprocess.check_call([ FindExecutable('storescu'), _REMOTE['Server'], str(_REMOTE['DicomPort']), GetDatabasePath('ColorTestImageJ.dcm') ]) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) i = DoGet(_REMOTE, '/instances') self.assertEqual(1, len(i)) m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): self.assertEqual(10, len(m)) elif IsOrthancVersionAbove(_REMOTE, 1, 9, 1): self.assertEqual(9, len(m)) else: self.assertEqual(8, len(m)) if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): self.assertTrue('MainDicomTagsSignature' in m) # New in Orthanc 1.11.0 if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): self.assertTrue('PixelDataOffset' in m) # New in Orthanc 1.9.1 self.assertEqual(2242, DoGet(_REMOTE, '/instances/%s/metadata/PixelDataOffset' % i[0])) self.assertTrue('IndexInSeries' in m) self.assertTrue('ReceptionDate' in m) self.assertTrue('RemoteAET' in m) self.assertTrue('Origin' in m) self.assertTrue('TransferSyntax' in m) self.assertTrue('SopClassUid' in m) self.assertTrue('RemoteIP' in m) self.assertTrue('CalledAET' in m) self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') series = DoGet(_REMOTE, '/series')[0] m = DoGet(_REMOTE, '/series/%s/metadata' % series) if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): self.assertEqual(3, len(m)) self.assertTrue('MainDicomTagsSignature' in m) else: self.assertEqual(2, len(m)) self.assertTrue('LastUpdate' in m) self.assertTrue('RemoteAET' in m) self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/RemoteAET' % series), 'STORESCU') self.assertEqual(DoGet(_REMOTE, '/series/%s/metadata/LastUpdate' % series), DoGet(_REMOTE, '/instances/%s/metadata/ReceptionDate' % i[0])) def test_incoming_findscu(self): UploadInstance(_REMOTE, 'Multiframe.dcm') UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) self.assertEqual(2, len(patientNames)) self.assertTrue('Test Patient BG ' in patientNames) self.assertTrue('Anonymized' in patientNames) i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) self.assertEqual(2, len(series)) self.assertTrue('20070208' in series) self.assertTrue('19980312' in series) i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'Modality=MR\\XA' ]) series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) self.assertEqual(1, len(series)) self.assertTrue('19980312' in series) i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) self.assertEqual(1, len(series)) # Test the "CaseSentitivePN" flag (false by default) i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) self.assertEqual(1, len(series)) # Test range search (buggy if Orthanc <= 0.9.6) i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) self.assertEqual(2, len(studies)) self.assertTrue('20070208' in studies) self.assertTrue('19980312' in studies) i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) self.assertEqual(1, len(studies)) self.assertTrue('19980312' in studies) i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) self.assertEqual(1, len(studies)) self.assertTrue('19980312' in studies) # Test that "Retrieve AE Title (0008,0054)" is present, which # was *not* the case in Orthanc <= 1.7.2 i = CallFindScu([ '-k', '0008,0052=INSTANCE' ]) instances = re.findall('\(0008,0054\).*?\[\s*(.*?)\s*\]', i) self.assertEqual(2, len(instances)) self.assertEqual('ORTHANC', instances[0].strip()) self.assertEqual('ORTHANC', instances[1].strip()) def test_incoming_findscu_2(self): # This test fails if "LookupMode_DatabaseOnly" is used # (sequences are not available in this mode, and only main # DICOM tags are returned) UploadInstance(_REMOTE, 'Multiframe.dcm') UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') # Test returning sequence values (only since Orthanc 0.9.5) i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag sequences = re.findall('\(0008,2112\)', i) self.assertEqual(1, len(sequences)) # Test returning a non-main DICOM tag, # "SecondaryCaptureDeviceID" (0018,1010), whose value is # "MEDPC" in "ColorTestImageJ.dcm" i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) tags = re.findall('\(0018,1010\).*MEDPC', i) self.assertEqual(1, len(tags)) def test_incoming_findscu_3(self): # This test fails if "LookupMode_DatabaseOnly" or # "LookupMode_DiskOnAnswer" is used, as # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM # tag, as thus a constraint cannot be applied to it UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) sequences = re.findall('\(0018,1010\)', i) self.assertEqual(1, len(sequences)) def test_incoming_movescu(self): UploadInstance(_REMOTE, 'Multiframe.dcm') # No matching patient, so no job is created self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) # 1 Matching patient, track the job self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]))) self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) def test_findscu(self): i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # Test the "find-patient" level p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) self.assertEqual(1, len(p)) self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) # Test wildcards constraints. The "LO" value representation # for PatientID is always case-sensitive, but the "PN" for # PatientName might depend on the implementation: # "GenerateConfigurationForTests.py" will force it to be case # insensitive (which was the default until Orthanc 0.8.6). p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) self.assertEqual(1, len(p)) p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) self.assertEqual(1, len(p)) p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) self.assertEqual(1, len(p)) p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) self.assertEqual(1, len(p)) p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) self.assertEqual(0, len(p)) p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) self.assertEqual(0, len(p)) p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) self.assertEqual(0, len(p)) DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) self.assertEqual(2, len(p)) # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) self.assertEqual(1, len(s)) self.assertEqual('20070208', s[0]['StudyDate']) # Test range searches t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'StudyDate' : '-20070101' }) self.assertEqual(0, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'StudyDate' : '20090101-' }) self.assertEqual(0, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'StudyDate' : '20070101-' }) self.assertEqual(1, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'StudyDate' : '-20090101' }) self.assertEqual(1, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'StudyDate' : '20070207-20070207' }) self.assertEqual(0, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'StudyDate' : '20070208-20070208' }) self.assertEqual(1, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'StudyDate' : '20070209-20070209' }) self.assertEqual(0, len(t)) # Test the ModalitiesInStudy tag t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'ModalitiesInStudy' : 'US' }) self.assertEqual(0, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'ModalitiesInStudy' : 'CT' }) self.assertEqual(1, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'ModalitiesInStudy' : 'US\\CT' }) self.assertEqual(1, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', 'ModalitiesInStudy' : '' }) self.assertEqual(1, len(t)) # Test the "find-series" level t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { 'PatientID' : 'B9uTHKOZ', 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) self.assertEqual(1, len(t)) # Test "\" separator t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { 'PatientID' : 'B9uTHKOZ', 'StudyInstanceUID' : s[0]['StudyInstanceUID'], 'Modality' : 'MR\\CT\\US' }) self.assertEqual(1, len(t)) t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { 'PatientID' : 'B9uTHKOZ', 'StudyInstanceUID' : s[0]['StudyInstanceUID'], 'Modality' : 'MR\\US' }) self.assertEqual(0, len(t)) def test_update_modalities(self): self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/modalities/toto')) DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer DoDelete(_REMOTE, '/modalities/tata') DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) DoDelete(_REMOTE, '/modalities/tata') DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) self.assertEqual('localhost', modalitiesReadback['tata']['Host']) self.assertEqual(2000, modalitiesReadback['tata']['Port']) self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) # New in Orthanc 1.8.1 self.assertTrue('configuration' in DoGet(_REMOTE, '/modalities/tata')) self.assertEqual(modalitiesReadback['tata'], DoGet(_REMOTE, '/modalities/tata/configuration')) DoDelete(_REMOTE, '/modalities/toto') DoDelete(_REMOTE, '/modalities/tata') self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) if IsOrthancVersionAbove(_REMOTE, 1, 12, 2): self.assertEqual(DoGet(_REMOTE, '/modalities?expand'), DoGet(_REMOTE, '/modalities?expand=true')) self.assertEqual(DoGet(_REMOTE, '/modalities'), DoGet(_REMOTE, '/modalities?expand=false')) def test_update_peers(self): # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/peers/toto')) DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) DoPut(_REMOTE, '/peers/tata', { 'Url': 'http://localhost:8042/', 'Username': 'user', 'Password' : 'pass', 'RemoteSelf' : 'self' }) self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) peersReadback = DoGet(_REMOTE, '/peers?expand') self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) self.assertEqual('user', peersReadback['tata']['Username']) if IsOrthancVersionAbove(_REMOTE, 1, 5, 4): self.assertEqual(None, peersReadback['tata']['Password']) # make sure no sensitive data is included self.assertFalse(peersReadback['tata']['Pkcs11']) # make sure no sensitive data is included self.assertEqual('self', peersReadback['tata']['RemoteSelf']) else: self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included self.assertFalse('RemoteSelf' in peersReadback['tata']) self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) # New in Orthanc 1.8.1 self.assertTrue('configuration' in DoGet(_REMOTE, '/peers/tata')) self.assertEqual(peersReadback['tata'], DoGet(_REMOTE, '/peers/tata/configuration')) DoDelete(_REMOTE, '/peers/toto') DoDelete(_REMOTE, '/peers/tata') self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) if IsOrthancVersionAbove(_REMOTE, 1, 12, 2): self.assertEqual(DoGet(_REMOTE, '/peers?expand'), DoGet(_REMOTE, '/peers?expand=true')) self.assertEqual(DoGet(_REMOTE, '/peers'), DoGet(_REMOTE, '/peers?expand=false')) def test_mesterhazy_modification(self): # When I modify a series ( eg. curl # http://localhost:8042/series/uidhere/modify -X POST -d # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified # series is added to a new Study, instead of the existing # Study. Fixed in Orthanc 0.7.5 u = UploadInstance(_REMOTE, 'DummyCT.dcm') study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' modified = DoPost(_REMOTE, '/series/%s/modify' % series, json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) def test_create(self): i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'PatientName' : 'Jodogne', 'Modality' : 'CT', 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA })) self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) self.assertEqual((5, 5), png.size) j = DoGet(_REMOTE, i['Path']) self.assertEqual('Instance', j['Type']) self.assertEqual(j['ID'], i['ID']) def test_pilates(self): # "SCU failed error when accessing orthanc with osirix" by # Pilates Agentur (Mar 10, 2014 at 9:33 PM) i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) def test_shared_tags(self): a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] p = DoGet(_REMOTE, '/patients')[0] self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) def test_modules(self): a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] p = DoGet(_REMOTE, '/patients')[0] s = DoGet(_REMOTE, '/studies')[0] t = DoGet(_REMOTE, '/series')[0] self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) def test_auto_directory(self): a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] self.assertTrue('now' in DoGet(_REMOTE, '/tools')) self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) def test_echo(self): DoPost(_REMOTE, '/modalities/orthanctest/echo') DoPost(_REMOTE, '/modalities/orthanctest/echo', '{}') # The following was not working in Orthanc 1.7.0 -> 1.8.1 DoPost(_REMOTE, '/modalities/orthanctest/echo', '') self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/nope/echo')) # New in Orthanc 1.8.1 DoPost(_REMOTE, '/tools/dicom-echo', [ _REMOTE['DicomAet'], _REMOTE['Server'], _REMOTE['DicomPort'] ]) DoPost(_REMOTE, '/tools/dicom-echo', DoGet(_REMOTE, '/modalities/orthanctest/configuration')) # Use the 'CheckFind' new option in Orthanc 1.8.1 DoPost(_REMOTE, '/modalities/self/echo', { 'CheckFind' : True }) DoPost(_REMOTE, '/tools/dicom-echo', { 'AET' : _REMOTE['DicomAet'], 'Host' : _REMOTE['Server'], 'Port' : _REMOTE['DicomPort'], 'CheckFind' : True }) def test_xml(self): json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') self.assertEqual(len(items), len(json)) self.assertTrue('dicom-conformance' in json) ok = False for i in items: if i.childNodes[0].data == 'dicom-conformance': ok = True self.assertTrue(ok) def test_googlecode_issue_16(self): i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] self.assertEqual('0018,1063', t) def test_googlecode_issue_22(self): s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] a = [ "f804691f62197040438f4627c6b994f1", # Frame 0 "c69eee9a51eea3e8611e82e578897254", "315666be83e2d0111c77bc0996d84901", "3e27aa959d911172c48a1436443c72b1", "958642c9e7e9d232d3869faff546058c", "5e7ea8e3e4230cae707d143481355c59", "eda37f83558d858a596175aed8b2ad47", "486713bd2895c4ecbe0e97715ac7f80a", "091ef729eb169e67da8a0faa9631f9a8", "5aa2b8c7ffe0a483efaa8e12417686ca", "e2f39e85896fe58876654b94cd0b5013", "6fd2129e4950abbe1be053bc814d5da8", "c3331a8ba7a757f3d423735ab7fa81f9", "746f808582156734dd6b6fdfd3a0b72c", "8075ea2b227a70c60ea6b7b75a6bb190", "806b8b3e300c615099c11a5ec23465aa", "7c836aa298ba6eef96434579af631a11", "a0357dc9f4f72d73a885c33d7c287446", "f25ba3be1cc7d7fad95706adc199ea7d", "8b114c526b8cbed6cad8a3248b7b480c", "44e6670f127e612a2b4aa60a0d207698", "b8945f90fe02facf2ace24ca1ecbe0a5", "95c796c2fa8f59018b15cf2987b1f79b", "ce0a51ab30224205b44920221dc27351", # Frame 23 ] self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) for i in range(len(a)): self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) def test_googlecode_issue_19(self): # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] if not HasGdcmPlugin(_REMOTE): self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) def test_googlecode_issue_37(self): # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'CaseSensitive' : True, 'Query' : { 'StationName' : 'SMR4-MP3' }}) self.assertEqual(1, len(a)) def test_rest_find(self): # Upload 12 instances for i in range(3): UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'CaseSensitive' : True, 'Query' : { 'PatientName' : '*NE*', 'StudyDate': '20080819' }}) self.assertEqual(1, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'CaseSensitive' : True, 'Query' : { 'PatientName' : '*NE*', 'PatientBirthDate': '20080101-20081231', 'PatientSex': '0000' }}) self.assertEqual(1, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'CaseSensitive' : True, 'Query' : { 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881' }}) self.assertEqual(2, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'CaseSensitive' : True, 'Query' : { 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', 'SeriesInstanceUID': '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' }}) self.assertEqual(3, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'CaseSensitive' : True, 'Query' : { 'StudyDate' : '20080818-20080820', 'Modality': 'MR' }}) self.assertEqual(2, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'CaseSensitive' : True, 'Query' : { 'StudyDate' : '20080818-', 'ModalitiesInStudy': 'MR' }}) self.assertEqual(1, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'CaseSensitive' : False, 'Query' : { 'PatientName' : 'BRAINIX' }}) self.assertEqual(1, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'CaseSensitive' : False, 'Query' : { 'PatientName' : 'BRAINIX\\KNEE\\NOPE' }}) self.assertEqual(2, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'CaseSensitive' : False, 'Query' : { 'PatientName' : '*n*' }}) self.assertEqual(2, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'CaseSensitive' : True, 'Query' : { 'PatientName' : '*n*' }}) self.assertEqual(0, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, 'Level' : 'Patient', 'CaseSensitive' : False, 'Query' : { 'PatientName' : '*ne*' }}) self.assertEqual(1, len(a)) self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'CaseSensitive' : True, 'Query' : { 'PatientName' : '*ne*' }}) self.assertEqual(0, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'CaseSensitive' : True, 'Query' : { 'PatientName' : '*NE*' }}) self.assertEqual(1, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'CaseSensitive' : True, 'Query' : { 'PatientName' : '*NE*' }}) self.assertEqual(2, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'CaseSensitive' : True, 'Query' : { 'PatientName' : '*NE*' }}) self.assertEqual(6, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) self.assertEqual(2, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) self.assertEqual(2, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) self.assertEqual(4, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) self.assertEqual(12, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Expand' : True, 'Query' : { 'StudyDate' : '20061201-20061201' }}) self.assertEqual(1, len(a)) self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Expand' : True, 'Query' : { 'StudyDate' : '20061201-20091201' }}) self.assertEqual(2, len(a)) for i in range(2): self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { 'StudyDate' : '20061202-20061202' }}) self.assertEqual(0, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Expand' : True, 'Query' : { 'StudyDate' : '-20061201' }}) self.assertEqual(1, len(a)) self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Expand' : True, 'Query' : { 'StudyDate' : '-20051201' }}) self.assertEqual(0, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Expand' : True, 'Query' : { 'StudyDate' : '20061201-' }}) self.assertEqual(2, len(a)) for i in range(2): self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Expand' : True, 'Query' : { 'StudyDate' : '20061202-' }}) self.assertEqual(1, len(a)) self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Expand' : True, 'Query' : { 'StudyDate' : '20080819-' }}) self.assertEqual(1, len(a)) self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Expand' : True, 'Query' : { 'StudyDate' : '20080820-' }}) self.assertEqual(0, len(a)) def test_rest_query_retrieve(self): self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) # Upload 8 instances for i in range(2): UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) for p in DoGet(_REMOTE, '/patients'): DoPost(_REMOTE, '/modalities/orthanctest/store', p) DoDelete(_REMOTE, '/patients/%s' % p) for q in DoGet(_REMOTE, '/queries'): DoDelete(_REMOTE, '/queries/%s' % q) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) if not IsOrthancVersionAbove(_LOCAL, 1, 11, 2): # TODO: check why this works with 0.8.6 and not with more recent versions a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', 'Query' : { 'PatientName' : '*NE*', 'StudyDate' : '*', }})['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) b = DoGet(_REMOTE, '/queries/%s' % a) self.assertTrue('answers' in b) self.assertTrue('level' in b) self.assertTrue('modality' in b) self.assertTrue('query' in b) self.assertTrue('retrieve' in b) self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) self.assertEqual(2, len(q)) self.assertTrue('PatientName' in q) self.assertTrue('StudyDate' in q) self.assertEqual('*NE*', q['PatientName']) self.assertEqual('*', q['StudyDate']) self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) self.assertTrue('content' in s) self.assertTrue('retrieve' in s) s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) self.assertEqual('887', s['PatientID']) self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) # New in Orthanc 1.4.3 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) self.assertEqual(2, len(s)) for i in range(2): self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) self.assertEqual('887', s[i]['PatientID']) self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) DoDelete(_REMOTE, '/queries/%s' % a) self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) def test_parent(self): u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' self.assertEqual(instance, u) a = DoGet(_REMOTE, '/studies/%s/patient' % study) self.assertEqual('Patient', a['Type']) self.assertEqual(patient, a['ID']) a = DoGet(_REMOTE, '/series/%s/patient' % series) self.assertEqual('Patient', a['Type']) self.assertEqual(patient, a['ID']) a = DoGet(_REMOTE, '/series/%s/study' % series) self.assertEqual('Study', a['Type']) self.assertEqual(study, a['ID']) a = DoGet(_REMOTE, '/instances/%s/patient' % instance) self.assertEqual('Patient', a['Type']) self.assertEqual(patient, a['ID']) a = DoGet(_REMOTE, '/instances/%s/study' % instance) self.assertEqual('Study', a['Type']) self.assertEqual(study, a['ID']) a = DoGet(_REMOTE, '/instances/%s/series' % instance) self.assertEqual('Series', a['Type']) self.assertEqual(series, a['ID']) def test_shanon(self): def Anonymize(instance, replacements = {}): return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements, 'Force' : True, }, 'application/json') self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] ids = [ 'ozp00SjY2xG', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] a = ExtractDicomTags(Anonymize(u), tags) for i in range(4): self.assertNotEqual(ids[i], a[i]) self.assertTrue(a[4].startswith('Orthanc')) a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) for i in range(4): self.assertNotEqual(ids[i], a[i]) self.assertFalse(a[4].startswith('Orthanc')) a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) self.assertEqual('instance', a[3]) self.assertFalse(a[4].startswith('Orthanc')) a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) self.assertEqual('series', a[2]) self.assertFalse(a[4].startswith('Orthanc')) a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) self.assertEqual('study', a[1]) self.assertFalse(a[4].startswith('Orthanc')) a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) self.assertEqual('patient', a[0]) self.assertFalse(a[4].startswith('Orthanc')) a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', 'StudyInstanceUID' : 'study', 'SeriesInstanceUID' : 'series', 'SOPInstanceUID' : 'instance' }), tags) self.assertEqual('patient', a[0]) self.assertFalse(a[4].startswith('Orthanc')) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) def test_shanon_2(self): def Modify(instance, replacements = {}): return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements, 'Force': True, }, 'application/json') self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] ids = [ 'ozp00SjY2xG', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] a = ExtractDicomTags(Modify(u), tags) self.assertEqual(ids[0], a[0]) self.assertEqual(ids[1], a[1]) self.assertEqual(ids[2], a[2]) self.assertNotEqual(ids[3], a[3]) self.assertEqual(0, len(a[4])) a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) self.assertEqual(ids[0], a[0]) self.assertEqual(ids[1], a[1]) self.assertEqual(ids[2], a[2]) self.assertEqual('instance', a[3]) a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) self.assertEqual(ids[0], a[0]) self.assertEqual(ids[1], a[1]) self.assertEqual('series', a[2]) self.assertNotEqual(ids[3], a[3]) a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) self.assertEqual(ids[0], a[0]) self.assertEqual('study', a[1]) self.assertNotEqual(ids[2], a[2]) self.assertNotEqual(ids[3], a[3]) a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) self.assertEqual('patient', a[0]) self.assertNotEqual(ids[1], a[1]) self.assertNotEqual(ids[2], a[2]) self.assertNotEqual(ids[3], a[3]) a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', 'StudyInstanceUID' : 'study', 'SeriesInstanceUID' : 'series', 'SOPInstanceUID' : 'instance' }), tags) self.assertEqual('patient', a[0]) self.assertEqual('study', a[1]) self.assertEqual('series', a[2]) self.assertEqual('instance', a[3]) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) def test_instances_tags(self): a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) self.assertEqual(2, len(i)) self.assertEqual('887', i[i.keys()[0]]['PatientID']) self.assertEqual('887', i[i.keys()[1]]['PatientID']) i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) self.assertEqual(2, len(i)) self.assertEqual('887', i[i.keys()[0]]['PatientID']) self.assertEqual('887', i[i.keys()[1]]['PatientID']) self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) self.assertEqual(1, len(i)) self.assertEqual('887', i[i.keys()[0]]['PatientID']) i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) self.assertEqual(1, len(i)) self.assertEqual('887', i[i.keys()[0]]['PatientID']) i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) self.assertEqual(1, len(i)) self.assertEqual('887', i[i.keys()[0]]['0010,0020']) def test_lookup(self): a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') self.assertEqual(0, len(a)) UploadInstance(_REMOTE, 'DummyCT.dcm') a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') self.assertEqual(1, len(a)) self.assertEqual('Patient', a[0]['Type']) self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') self.assertEqual(1, len(a)) self.assertEqual('Study', a[0]['Type']) self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') self.assertEqual(1, len(a)) self.assertEqual('Series', a[0]['Type']) self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') self.assertEqual(1, len(a)) self.assertEqual('Instance', a[0]['Type']) self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) DropOrthanc(_REMOTE) a = DoPost(_REMOTE, '/tools/lookup', '3113719P') self.assertEqual(0, len(a)) def test_autorouting(self): knee1 = 'Knee/T1/IM-0001-0001.dcm' knee2 = 'Knee/T2/IM-0001-0002.dcm' other = 'Brainix/Flair/IM-0001-0001.dcm' # Check that this version is >= 0.8.0 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) UploadInstance(_REMOTE, knee1) self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) DropOrthanc(_REMOTE) DropOrthanc(_LOCAL) InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') UploadInstance(_REMOTE, knee1) UploadInstance(_REMOTE, knee2) UploadInstance(_REMOTE, other) WaitEmpty(_REMOTE) UninstallLuaCallbacks(_REMOTE) self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) DropOrthanc(_REMOTE) DropOrthanc(_LOCAL) InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') UploadInstance(_REMOTE, knee1) UploadInstance(_REMOTE, knee2) UploadInstance(_REMOTE, other) WaitEmpty(_REMOTE) UninstallLuaCallbacks(_REMOTE) self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) DropOrthanc(_REMOTE) DropOrthanc(_LOCAL) InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') UploadInstance(_REMOTE, knee1) WaitEmpty(_REMOTE) UninstallLuaCallbacks(_REMOTE) i = DoGet(_LOCAL, '/instances') self.assertEqual(1, len(i)) with tempfile.NamedTemporaryFile(delete = True) as f: f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) f.flush() routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) self.assertEqual(None, re.search('"MilitaryRank"', routed)) self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag def test_storescu_rf(self): i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) def test_anonymize_instance(self): def AnonymizeAndUpload(instanceId, parameters): return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, 'application/json'), 'application/dicom')['ID'] def ModifyAndUpload(instanceId, parameters): return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, 'application/json'), 'application/dicom')['ID'] a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) b = AnonymizeAndUpload(a, '{}') self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) # Keep private tag (only OK since Orthanc 0.8.0) b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) # Examples from the Wiki b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) # Test modify non-existing i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'PatientName' : 'Jodogne', 'Modality' : 'CT', }))['ID'] self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) def test_incoming_jpeg(self): # since this test fails regularly on CI, enable verbosity DoPut(_REMOTE, '/tools/log-level', 'verbose') def storescu(image, acceptUnknownSopClassUid, expectSuccess = True, retries = 1): if acceptUnknownSopClassUid: tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] else: tmp = [ '-xs' ] while retries > 0: retries -= 1 with open(os.devnull, 'w') as FNULL: try: subprocess.check_call([ FindExecutable('storescu') ] + tmp + [ _REMOTE['Server'], str(_REMOTE['DicomPort']), GetDatabasePath(image) ], stderr = FNULL) if expectSuccess: return except subprocess.CalledProcessError as e: print('storescu failed with error code: %s' % str(e.returncode)) if not expectSuccess: raise e self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) if IsOrthancVersionAbove(_REMOTE, 1, 9, 0): a = DoPut(_REMOTE, '/tools/accepted-transfer-syntaxes', [ '1.2.840.10008.1.2', '1.2.840.10008.1.2.1', '1.2.840.10008.1.2.2' ]) self.assertTrue('1.2.840.10008.1.2' in a) self.assertTrue('1.2.840.10008.1.2.1' in a) self.assertTrue('1.2.840.10008.1.2.2' in a) self.assertEqual(3, len(a)) self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', 'nope')) DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', '0') self.assertEqual(0, DoGet(_REMOTE, '/tools/unknown-sop-class-accepted')) else: InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') # the following line regularly fails on CI because storescu still returns 0 although the C-Store fails -> that's why we have implemented retries self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False, False, 3)) self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True, False, 3)) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) if IsOrthancVersionAbove(_REMOTE, 1, 9, 0): a = DoPut(_REMOTE, '/tools/accepted-transfer-syntaxes', '*', 'text/plain') self.assertGreaterEqual(42, len(a)) DoPut(_REMOTE, '/tools/unknown-sop-class-accepted', 'true') self.assertEqual(1, DoGet(_REMOTE, '/tools/unknown-sop-class-accepted')) else: InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") storescu('Knix/Loc/IM-0001-0001.dcm', False) storescu('UnknownSopClassUid.dcm', True) self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) # set back normal verbosity DoPut(_REMOTE, '/tools/log-level', 'default') def test_storescu_jpeg(self): self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] # This is JPEG lossless self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) DropOrthanc(_REMOTE) self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) def test_pixel_data(self): jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] phenixSize = 358 * 512 * 2 colorSize = 1000 * 1000 * 3 jpegSize = 51918 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) def test_decode_brainix(self): brainix = [ UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) => doesn't work on big-endian UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) ] h = '6fb11b932d535c2be04beabd99793ff8' maxValue = 426.0 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) for i in brainix: self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) truth2 = map(lambda x: min(255, x), truth.getdata()) for i in brainix: self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) for i in brainix: self.AssertSameImages(truth2, '/instances/%s/preview' % i) for i in brainix: self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) def test_decode_color(self): imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] for i in [ imagej, color ]: for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) def test_decode_rf(self): rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) def test_decode_multiframe(self): mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] # Test the first frame truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) # Test the last frame truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) def test_decode_signed(self): signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] minValue = -2000 maxValue = 4042 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) truth3 = map(lambda x: 255 if x >= 256 else x, truth2) self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) self.AssertSameImages(tmp, '/instances/%s/preview' % signed) self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) def test_googlecode_issue_32(self): self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) self.assertEqual(u'Рентгенография', tags['SeriesDescription']) self.assertEqual(u'Таз', tags['BodyPartExamined']) self.assertEqual(u'Прямая', tags['ViewPosition']) # Replay the same test using Latin1 as default encoding: This must fail self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) DoDelete(_REMOTE, '/instances/%s' % f) f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) def test_encodings(self): # Latin-1 (ISO_IR 100) brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) # Latin-2 (ISO_IR 101) a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - self.assertEqual('Imię i Nazwisko osoby opisującej', i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) def test_storescu_custom_aet(self): # This tests a feature introduced in Orthanc 0.9.1: "Custom # setting of the local AET during C-Store SCU (both in Lua and # in the REST API)." # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') j = DoPost(_REMOTE, '/modalities/orthanctest/store', { 'LocalAet' : 'YOP', 'Resources' : [ a['ID'], b['ID'] ] }) self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) DropOrthanc(_LOCAL) self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) j = DoPost(_REMOTE, '/modalities/orthanctest/store', { 'Resources' : [ c['ID'] ] }) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) DropOrthanc(_REMOTE) DropOrthanc(_LOCAL) InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') WaitEmpty(_REMOTE) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') WaitEmpty(_REMOTE) self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) def test_resources_since_limit(self): # Upload 16 instances for i in range(4): UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) for limit in [ 1, 2, 3, 7, 16, 17 ]: s = {} since = 0 while True: t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) if len(t) == 0: break since += len(t) for i in t: s[i] = None self.assertEqual(16, len(s)) for instance in DoGet(_REMOTE, '/instances'): self.assertTrue(instance in s) def test_create_pdf(self): # Upload 4 instances brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: pdf = f.read() i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Tags' : { 'PatientName' : 'Jodogne', 'Modality' : 'CT', }, 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) })) self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) self.assertEqual('1.2.840.10008.5.1.4.1.1.104.1', DoGet(_REMOTE, '/instances/%s/content/SOPClassUID' % i['ID']).strip('\x00')) self.assertEqual('WSD', DoGet(_REMOTE, '/instances/%s/content/ConversionType' % i['ID']).strip()) self.assertEqual('application/pdf', DoGet(_REMOTE, '/instances/%s/content/MIMETypeOfEncapsulatedDocument' % i['ID']).strip()) # In Orthanc <= 1.9.7, the "CT" would have been replaced by "OT" # https://groups.google.com/g/orthanc-users/c/eNSddNrQDtM/m/wc1HahimAAAJ self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) self.assertEqual(len(b), len(pdf) + 1) self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Parent' : brainixPatient, 'Tags' : { 'PatientName' : 'Jodogne', } }))) i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Parent' : brainixPatient, 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) })) self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) self.assertEqual('1.2.840.10008.5.1.4.1.1.104.1', DoGet(_REMOTE, '/instances/%s/content/SOPClassUID' % i['ID']).strip('\x00')) self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip('\x00')) self.assertEqual('WSD', DoGet(_REMOTE, '/instances/%s/content/ConversionType' % i['ID']).strip()) self.assertEqual('application/pdf', DoGet(_REMOTE, '/instances/%s/content/MIMETypeOfEncapsulatedDocument' % i['ID']).strip()) i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Parent' : brainixStudy, 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) })) self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Parent' : brainixEpi, 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) })) self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) self.assertEqual(len(b), len(pdf)) self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) def test_create_series(self): i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 100', 'PatientName' : 'Sébastien Jodogne', 'Modality' : 'CT', }, 'Content' : [ { 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA 'Tags' : { 'ImageComments' : 'Tutu' } }, 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', ] })) s = DoGet(_REMOTE, i['Path']) self.assertEqual('Series', s['Type']) self.assertEqual(s['ID'], i['ID']) self.assertEqual(2, len(s['Instances'])) self.assertEqual(2, s['ExpectedNumberOfInstances']) self.assertEqual('Complete', s['Status']) a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) self.assertTrue('ImageComments' in a or 'ImageComments' in b) if 'ImageComments' in a: self.assertEqual('Tutu', a['ImageComments']) else: self.assertEqual('Tutu', b['ImageComments']) patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), 'Sébastien Jodogne') def test_create_binary(self): binary = ''.join(map(chr, range(256))) encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) tags = { 'PatientName' : 'Jodogne', '8899-8899' : encoded } i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Tags' : tags, 'PrivateCreator' : 'TestBinary', })) self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'InterpretBinaryTags' : False, 'Tags' : tags, 'PrivateCreator' : 'TestBinary', })) self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) def test_patient_ids_collision(self): # Upload 3 instances from 3 different studies, but with the # same PatientID for i in range(3): UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { 'PatientName' : '*' }}) self.assertEqual(1, len(a)) self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'CaseSensitive' : True, 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) self.assertEqual(2, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'CaseSensitive' : False, 'Query' : { 'PatientName' : 'Foo' }}) self.assertEqual(1, len(a)) self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { 'PatientName' : '*' }}) self.assertEqual(3, len(a)) d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) self.assertTrue('FOO^SERIES' in d) self.assertTrue('HELLO^SERIES' in d) self.assertTrue('WORLD^SERIES' in d) d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) self.assertEqual(1, len(set(d))) self.assertEqual('COMMON', d[0]) for i in a: d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] self.assertEqual('%s^SERIES' % p, d) def test_bitbucket_issue_4(self): UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') UploadInstance(_REMOTE, 'Formats/Rle.dcm') self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) p = DoGet(_REMOTE, '/patients') self.assertEqual(2, len(p)) i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) self.assertEqual(3, len(i1)) self.assertEqual(3, len(i2)) j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) def test_create_sequence(self): i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Tags' : { 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 'PatientName': 'Jodogne^', 'ReferencedStudySequence': GenerateTestSequence(), } }))['ID'] self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) self.assertEqual(u'Sébastien^'.encode('latin-1'), DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) def test_modify_sequence(self): i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) j = DoPost(_REMOTE, '/instances/%s/modify' % i, json.dumps({ "Replace" : { "PatientName" : "hello", 'ReferencedStudySequence': GenerateTestSequence(), }, }), 'application/json') j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] DoDelete(_REMOTE, '/instances/%s' % i) self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) def test_compression(self): i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] aa = DoGet(_REMOTE, '/instances/%s/attachments/' % i) if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): # This file has *no* pixel data, so "dicom-until-pixel-data" is not stored self.assertEqual(1, len(aa)) self.assertTrue('dicom' in aa) else: self.assertEqual(2, len(aa)) self.assertTrue('dicom' in aa) self.assertTrue('dicom-as-json' in aa) data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom/data' % i)[1] # If "StorageCompression" is enabled in the Orthanc to be # tested, uncompress the attachment before running the test if DoGet(_REMOTE, '/instances/%s/attachments/dicom/is-compressed' % i) != 0: DoPost(_REMOTE, '/instances/%s/attachments/dicom/uncompress' % i) cs = int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']) us = int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) size = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom/size' % i)) md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom/md5' % i) self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom/compressed-data' % i)[1]) self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom/compressed-md5' % i)) self.assertEqual(size, int(DoGet(_REMOTE, '/instances/%s/attachments/dicom/compressed-size' % i))) ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom' % i) self.assertTrue('compress' in ops) self.assertTrue('uncompress' in ops) self.assertTrue('is-compressed' in ops) self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom/is-compressed' % i)) DoPost(_REMOTE, '/instances/%s/attachments/dicom/verify-md5' % i) # Re-compress the attachment DoPost(_REMOTE, '/instances/%s/attachments/dicom/compress' % i) DoPost(_REMOTE, '/instances/%s/attachments/dicom/verify-md5' % i) self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom/is-compressed' % i)) self.assertGreater(cs, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) self.assertEqual(us, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom/compressed-data' % i)[1])) self.assertGreater(size, int(DoGet(_REMOTE, '/instances/%s/attachments/dicom/compressed-size' % i))) self.assertEqual(size, int(DoGet(_REMOTE, '/instances/%s/attachments/dicom/size' % i))) self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom/md5' % i)) self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom/compressed-md5' % i)) DoPost(_REMOTE, '/instances/%s/attachments/dicom/uncompress' % i) DoPost(_REMOTE, '/instances/%s/attachments/dicom/verify-md5' % i) self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom/is-compressed' % i)) self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom/compressed-data' % i)[1]) self.assertEqual(size, int(DoGet(_REMOTE, '/instances/%s/attachments/dicom/compressed-size' % i))) self.assertEqual(size, int(DoGet(_REMOTE, '/instances/%s/attachments/dicom/size' % i))) self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom/md5' % i)) self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom/compressed-md5' % i)) self.assertEqual(cs, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) self.assertEqual(us, int(DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])) def test_ordered_slices(self): i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) self.assertEqual('Sequence', o['Type']) self.assertEqual(1, len(o['Dicom'])) self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) self.assertEqual(76, len(o['Slices'])) for j in range(76): self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) self.assertEqual(1, len(o['SlicesShort'])) self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) self.assertEqual(0, o['SlicesShort'][0][1]) self.assertEqual(76, o['SlicesShort'][0][2]) i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) self.assertEqual('Volume', o['Type']) self.assertEqual(3, len(o['Dicom'])) self.assertEqual(3, len(o['Slices'])) self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) self.assertEqual(3, len(o['SlicesShort'])) self.assertEqual(k, o['SlicesShort'][0][0]) self.assertEqual(0, o['SlicesShort'][0][1]) self.assertEqual(1, o['SlicesShort'][0][2]) self.assertEqual(j, o['SlicesShort'][1][0]) self.assertEqual(0, o['SlicesShort'][1][1]) self.assertEqual(1, o['SlicesShort'][1][2]) self.assertEqual(i, o['SlicesShort'][2][0]) self.assertEqual(0, o['SlicesShort'][2][1]) self.assertEqual(1, o['SlicesShort'][2][2]) i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) self.assertEqual('Sequence', o['Type']) self.assertEqual(2, len(o['Dicom'])) self.assertEqual(2, len(o['Slices'])) self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) self.assertEqual(2, len(o['SlicesShort'])) self.assertEqual(i, o['SlicesShort'][0][0]) self.assertEqual(0, o['SlicesShort'][0][1]) self.assertEqual(1, o['SlicesShort'][0][2]) self.assertEqual(j, o['SlicesShort'][1][0]) self.assertEqual(0, o['SlicesShort'][1][1]) self.assertEqual(1, o['SlicesShort'][1][2]) def test_incoming_movescu_accession(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') # No matching patient, so no job is created self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) # 1 Matching patient, track the job self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=A10003245599' ]))) self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) def test_dicom_to_json(self): i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: self.assertTrue(CompareTags(t, json.loads(f.read()), [ # Tags for compatibility with DCMTK 3.6.0 'RETIRED_OtherPatientIDs', 'OtherPatientIDs', 'ACR_NEMA_2C_VariablePixelDataGroupLength', ])) t = DoGet(_REMOTE, '/instances/%s/tags' % i) with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: self.assertTrue(CompareTags(t, json.loads(f.read()), [ ])) t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: self.assertTrue(CompareTags(t, json.loads(f.read()), [ ])) # NB: To get the actual value of the "tags" JSON file, use the # following command: # $ curl http://alice:orthanctest@localhost:8042/instances/d29ead49-43e8601d-72f1e922-7de676ee-ea77c2b4/tags t = DoGet(_REMOTE, '/instances/%s/tags' % j) with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: a = json.loads(f.read()) # Starting with Orthanc 1.9.1, the DICOM-as-JSON # reports are truncated starting with PixelData if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): self.assertFalse('7fe1,0010' in t) self.assertFalse('7fe1,1001' in t) del a['7fe1,0010'] del a['7fe1,1001'] else: self.assertTrue('7fe1,0010' in t) self.assertTrue('7fe1,1001' in t) aa = json.dumps(a).replace('2e+022', '2e+22') tt = (json.dumps(t) .replace('2e+022', '2e+22') # The "IllegalPrivatePixelSequence" tag was introduced in DCMTK 3.6.6 dictionary .replace('IllegalPrivatePixelSequence', 'Unknown Tag & Data')) self.assertEqual(aa, tt) def test_batch_archive(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') s = DoPost(_REMOTE, '/tools/create-archive', [ ]) z = zipfile.ZipFile(StringIO(s), "r") self.assertEqual(0, len(z.namelist())) # One patient s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) z = zipfile.ZipFile(StringIO(s), "r") self.assertEqual(4, len(z.namelist())) # One patient + twice its study + one series from other patient s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' ]) z = zipfile.ZipFile(StringIO(s), "r") self.assertEqual(6, len(z.namelist())) # One patient + one series + one instance s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' ]) z = zipfile.ZipFile(StringIO(s), "r") self.assertEqual(7, len(z.namelist())) if IsOrthancVersionAbove(_REMOTE, 1, 12, 2): s = DoGet(_REMOTE, '/tools/create-archive?resources=ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17,1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0,1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87') z = zipfile.ZipFile(StringIO(s), "r") self.assertEqual(7, len(z.namelist())) def test_decode_brainix_as_jpeg(self): i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] j = GetImage(_REMOTE, '/instances/%s/preview' % i) self.assertEqual('PNG', j.format) self.assertEqual(j.size[0], 256) self.assertEqual(j.size[1], 256) j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) self.assertEqual('PNG', j.format) j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) self.assertEqual('PNG', j.format) j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) self.assertEqual('PNG', j.format) j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) self.assertEqual('JPEG', j.format) self.assertEqual(j.size[0], 256) self.assertEqual(j.size[1], 256) a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) self.assertLess(a, b) j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) self.assertEqual('JPEG', j.format) # 16bit encoding is not supported with JPEG self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) # No matching content type self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) def test_media_encodings(self): ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) z = zipfile.ZipFile(StringIO(tmp), "r") self.assertEqual(4, len(z.namelist())) self.assertTrue('IMAGES/IM0' in z.namelist()) self.assertTrue('IMAGES/IM1' in z.namelist()) self.assertTrue('IMAGES/IM2' in z.namelist()) self.assertTrue('DICOMDIR' in z.namelist()) try: os.remove('/tmp/DICOMDIR') except: # The file does not exist pass z.extract('DICOMDIR', '/tmp') a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], stderr = subprocess.STDOUT).split('\n') a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], stderr = subprocess.STDOUT).split('\n') self.assertEqual(1, len(a)) self.assertEqual('', a[0]) a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) os.remove('/tmp/DICOMDIR') def test_findscu_counters(self): UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) self.assertEqual(1, len(s)) self.assertTrue('1 ' in s) i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) self.assertEqual(1, len(s)) self.assertTrue('2 ' in s) i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) self.assertEqual(1, len(s)) self.assertTrue('3 ' in s) i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) self.assertEqual(1, len(s)) self.assertTrue('2 ' in s) i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) self.assertEqual(1, len(s)) self.assertTrue('3 ' in s) i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) self.assertEqual(2, len(s)) self.assertTrue('1 ' in s) self.assertTrue('2 ' in s) i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) self.assertEqual(1, len(s)) t = map(lambda x: x.strip(), s[0].split('\\')) self.assertTrue('PT' in t) self.assertTrue('CT' in t) i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) self.assertEqual(1, len(s)) t = map(lambda x: x.strip('\x00'), s[0].split('\\')) self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) def test_decode_transfer_syntax(self): def Check(t, md5): i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] if t != '1.2.840.10008.1.2': # This file has no meta header transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) self.assertEqual(t, transferSyntax) if md5 == None: self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) else: m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) self.assertEqual(m, md5) Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') # The 3 checks below don't work on big-endian Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') # TODO - Doesn't work with GDCM 3.0.7 alone Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') # JPEG2k image, not supported without GDCM plugin if not HasGdcmPlugin(_REMOTE): Check('1.2.840.10008.1.2.4.90', None) Check('1.2.840.10008.1.2.4.91', None) def test_raw_frame(self): s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) self.assertEqual(512 * 512 * 2, len(a)) self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) self.assertEqual("L", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(512, im.size[1]) # Test an image with 2 JPEG frames spread over multiple fragments s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) self.assertEqual(69214, len(a)) self.assertEqual(ComputeMD5(a), ComputeMD5(b)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) self.assertEqual("RGB", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(512, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) # TODO - Doesn't work with GDCM 3.0.7 alone self.assertEqual("RGB", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(512, im.size[1]) def test_rest_movescu(self): self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) # Upload 4 instances UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) for p in DoGet(_REMOTE, '/patients'): DoPost(_REMOTE, '/modalities/orthanctest/store', p) DoDelete(_REMOTE, '/patients/%s' % p) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) # Move instance Brainix/Flair/IM-0001-0001.dcm DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', 'Resources' : [ { 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', } ]}) # Move series Brainix/Flair/* self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) if IsOrthancVersionAbove(_REMOTE, 1, 11, 1): # Reset and test asynchronous C-Move at instance level for p in DoGet(_REMOTE, '/patients'): DoDelete(_REMOTE, '/patients/%s' % p) DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', 'Resources' : [ { 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', } ], 'Asynchronous': True }) job = MonitorJob2(_REMOTE, lambda: DoPost (_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', 'Resources' : [ { 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', } ], 'Asynchronous': True })) self.assertNotEqual(None, job) # check the job was successfull self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) # check the job content jobContent = DoGet(_REMOTE, '/jobs/%s' % job)['Content'] self.assertEqual('2.16.840.1.113669.632.20.1211.10000357775', jobContent['Query'][0]['0020,000d']) self.assertEqual('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', jobContent['Query'][0]['0020,000e']) self.assertEqual('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', jobContent['Query'][0]['0008,0018']) # Reset and test synchronous C-Move at series level for p in DoGet(_REMOTE, '/patients'): DoDelete(_REMOTE, '/patients/%s' % p) DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', 'Resources' : [ { 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', } ]}) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) if IsOrthancVersionAbove(_REMOTE, 1, 11, 1): # Reset and test asynchronous C-Move at series level with additional PatientID filter for p in DoGet(_REMOTE, '/patients'): DoDelete(_REMOTE, '/patients/%s' % p) job = MonitorJob2(_REMOTE, lambda: DoPost (_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', 'Resources' : [ { 'PatientID' : '5Yp0E', 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', } ], 'Asynchronous': True })) self.assertNotEqual(None, job) # check the job was successfull self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) # check the job content jobContent = DoGet(_REMOTE, '/jobs/%s' % job)['Content'] self.assertEqual('2.16.840.1.113669.632.20.1211.10000357775', jobContent['Query'][0]['0020,000d']) self.assertEqual('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', jobContent['Query'][0]['0020,000e']) self.assertEqual('5Yp0E', jobContent['Query'][0]['0010,0020']) # Move series Brainix/Epi/* DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', 'Resources' : [ { 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', } ]}) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) if IsOrthancVersionAbove(_REMOTE, 1, 11, 1): # Move study Knee asynchronously job = MonitorJob2(_REMOTE, lambda: DoPost (_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', 'Resources' : [ { 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881' } ], 'Asynchronous': True })) self.assertNotEqual(None, job) # check the job was successfull self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) # check the job content jobContent = DoGet(_REMOTE, '/jobs/%s' % job)['Content'] self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', jobContent['Query'][0]['0020,000d']) # Reset for p in DoGet(_REMOTE, '/patients'): DoDelete(_REMOTE, '/patients/%s' % p) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) if IsOrthancVersionAbove(_REMOTE, 1, 11, 1): # Move all at once asynchronously at PatientLevel job = MonitorJob2(_REMOTE, lambda: DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Patient', 'Resources' : [ { 'PatientID' : '5Yp0E', }, { 'PatientID': '887', 'PatientName' : 'KNEE', } ], 'Synchronous': False })) self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) def test_reconstruct_json(self): self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] first = DoGet(_REMOTE, '/instances/%s/tags' % instance) self.assertEqual('TWINOW', first['0008,1010']['Value']) if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) else: self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) # Cannot delete the "DICOM" attachment self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) # Can delete the "DICOM as JSON" attachment if not IsOrthancVersionAbove(_REMOTE, 1, 9, 1): r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) self.assertTrue(type(r) is dict and len(r) == 0) # Only the "DICOM" attachment subsists self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) # Cannot manually reconstruct the "DICOM as JSON" attachment self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) # Transparently reconstruct the "DICOM as JSON" attachment self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) second = DoGet(_REMOTE, '/instances/%s/tags' % instance) self.assertEqual(str(first), str(second)) if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) else: self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) self.assertEqual(str(first), str(third)) def test_reconstruct_json2(self): self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) aa = DoGet(_REMOTE, '/instances/%s/attachments' % a) bb = DoGet(_REMOTE, '/instances/%s/attachments' % b) if not IsOrthancVersionAbove(_REMOTE, 1, 9, 1): self.assertEqual(2, len(aa)) self.assertEqual(aa, bb) self.assertTrue('dicom' in aa) self.assertTrue('dicom-as-json' in aa) elif IsDicomUntilPixelDataStored(_REMOTE): self.assertEqual(2, len(aa)) self.assertEqual(aa, bb) self.assertTrue('dicom' in aa) self.assertTrue('dicom-until-pixel-data' in aa) else: self.assertEqual(1, len(aa)) self.assertEqual(aa, bb) self.assertTrue('dicom' in aa) # In Orthanc <= 1.9.0, this call deletes "dicom-as-json" DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') if IsOrthancVersionAbove(_REMOTE, 1, 9, 1) and IsDicomUntilPixelDataStored(_REMOTE): self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) else: self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) # In Orthanc <= 1.9.0, this call reconstructs "dicom-as-json" self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) if IsOrthancVersionAbove(_REMOTE, 1, 9, 1) and not IsDicomUntilPixelDataStored(_REMOTE): self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) else: self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) def test_private_tags(self): i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) def test_findscu_encoding(self): # Check out ../Database/Encodings/Generate.sh TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ' ENCODINGS = { 'Arabic' : [ 'ISO_IR 127' ], 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 'Cyrillic' : [ 'ISO_IR 144' ], 'Greek' : [ 'ISO_IR 126' ], 'Hebrew' : [ 'ISO_IR 138' ], 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], 'Latin1' : [ 'ISO_IR 100' ], 'Latin2' : [ 'ISO_IR 101' ], 'Latin3' : [ 'ISO_IR 109' ], 'Latin4' : [ 'ISO_IR 110' ], 'Latin5' : [ 'ISO_IR 148' ], 'Thai' : [ 'ISO_IR 166', 'tis-620' ], 'Utf8' : [ 'ISO_IR 192' ], } for name in ENCODINGS.iterkeys(): if len(ENCODINGS[name]) == 1: ENCODINGS[name].append(name.lower()) UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') for name in ENCODINGS.iterkeys(): self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SpecificCharacterSet', '-k', 'PatientName' ]) characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) self.assertEqual(1, len(characterSet)) self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) self.assertEqual(1, len(patientName)) expected = TEST.encode(ENCODINGS[name][1], 'ignore') self.assertEqual(expected, patientName[0].strip()) #for master in ENCODINGS: for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) for name in ENCODINGS: DropOrthanc(_REMOTE) UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'PatientID', '-k', 'SpecificCharacterSet', '-k', 'PatientName' ]) i = i.decode(ENCODINGS[master][1]) characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) self.assertEqual(1, len(characterSet)) self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) self.assertEqual(1, len(patientId)) self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) self.assertEqual(1, len(patientName)) tmp = ENCODINGS[name][1] expected = TEST.encode(tmp, 'ignore').decode(tmp) tmp = ENCODINGS[master][1] expected = expected.encode(tmp, 'ignore').decode(tmp) self.assertEqual(expected, patientName[0].strip()) a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, 'Level' : 'Study', 'Query' : { }}) self.assertEqual(1, len(a)) tmp = ENCODINGS[name][1] self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) def test_reconstruct(self): def CompareMainDicomTag(expected, instance, level, tag): self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) originalInstanceId = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] studies = DoGet(_REMOTE, '/studies/') self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) self.assertEqual(1, len(studies)) self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { "Replace" : { "StudyDescription" : "hello", "SeriesDescription" : "world", "SOPClassUID" : "test", "SOPInstanceUID" : "myid", }, "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], "Force" : True }) instances = DoGet(_REMOTE, '/instances/') self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) self.assertEqual(2, len(instances)) modifiedInstanceId = instances[0] if instances[1] == originalInstanceId else instances[1] # in 1.11.3, we have added an automatic reconstruction at the end of the modification if not IsOrthancVersionAbove(_REMOTE, 1, 11, 3): CompareMainDicomTag('Knee (R)', originalInstanceId, 'study', 'StudyDescription') CompareMainDicomTag('AX. FSE PD', originalInstanceId, 'series', 'SeriesDescription') CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', originalInstanceId, '', 'SOPInstanceUID') CompareMainDicomTag('myid', modifiedInstanceId, '', 'SOPInstanceUID') self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % originalInstanceId).strip()) self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % modifiedInstanceId).strip()) if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): # metadata before reconstruct mba = DoGet(_REMOTE, '/instances/%s/metadata?expand' % originalInstanceId) mbb = DoGet(_REMOTE, '/instances/%s/metadata?expand' % originalInstanceId) # reconstruct by taking the new instance as the reference -> should repopulate study fields from this instance tags DoPost(_REMOTE, '/instances/%s/reconstruct' % modifiedInstanceId, {}) CompareMainDicomTag('hello', originalInstanceId, 'study', 'StudyDescription') CompareMainDicomTag('world', originalInstanceId, 'series', 'SeriesDescription') CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', originalInstanceId, '', 'SOPInstanceUID') if not IsOrthancVersionAbove(_REMOTE, 1, 11, 3): if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): # metadata after reconstruct should have been preserved maa = DoGet(_REMOTE, '/instances/%s/metadata?expand' % originalInstanceId) mab = DoGet(_REMOTE, '/instances/%s/metadata?expand' % originalInstanceId) self.assertEqual(mba, maa) self.assertEqual(mbb, mab) @unittest.skip("httpbin.org is down as of 2022-12-22") # TODO def test_httpClient_lua(self): retries = 4 result = '' with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: scriptContent = f.read() # retry since this test sometimes fails if httpbin.org is unresponsive while retries > 0 and not ('OK' in result): print("Executing lua script HttpClient.lua") result = DoPost(_REMOTE, '/tools/execute-script', scriptContent, 'application/lua') retries -= 1 self.assertIn('OK', result) def test_bitbucket_issue_44(self): # https://bugs.orthanc-server.com/show_bug.cgi?id=44 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: im = GetImage(_REMOTE, '/instances/%s/preview' % i) self.assertEqual("L", im.mode) self.assertEqual(2010, im.size[0]) self.assertEqual(2446, im.size[1]) # This is the chest image, with MONOCHROME1. Raw background is # white (255), should be rendered as black (0) => invert if i == monochrome1_jpeg: # Add some tolerance because of JPEG destructive compression self.assertGreater(10, im.getpixel((0,0))) else: self.assertEqual(0, im.getpixel((0,0))) im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) self.assertEqual("L", im.mode) self.assertEqual(1572, im.size[0]) self.assertEqual(2010, im.size[1]) # This is the key image, with MONOCHROME2. Raw background is # white (255), should be rendered as white (255) self.assertEqual(255, im.getpixel((0,0))) def test_bitbucket_issue_42(self): # https://bugs.orthanc-server.com/show_bug.cgi?id=42 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] modified = DoPost(_REMOTE, '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', 'application/json') self.assertTrue('PatientID' in modified) def test_rest_find_limit(self): # Check the "Since" and "Limit" parameters in URI "/tools/find" # Related to issue 53: https://bugs.orthanc-server.com/show_bug.cgi?id=53 # Upload 6 instances brainix = [] knee = [] for i in range(2): brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) # Check using BRAINIX a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { 'PatientName' : 'B*' }, 'Limit' : 10 }) self.assertEqual(4, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { 'PatientName' : 'B*' }, 'Limit' : 4 }) self.assertEqual(4, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { 'PatientName' : 'B*' }, 'Since' : 2, 'Limit' : 4 }) self.assertEqual(2, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { 'PatientName' : 'B*' }, 'Limit' : 3 }) self.assertEqual(3, len(a)) b = [] for i in range(4): a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { 'PatientName' : 'B*' }, 'Limit' : 1, 'Since' : i }) self.assertEqual(1, len(a)) b.append(a[0]) # Check whether the two sets are equal through symmetric difference self.assertEqual(0, len(set(b) ^ set(brainix))) # Check using KNEE a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { 'PatientName' : 'K*' }, 'Limit' : 10 }) self.assertEqual(2, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { 'PatientName' : 'K*' }, 'Limit' : 2 }) self.assertEqual(2, len(a)) b = [] for i in range(2): a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { 'PatientName' : 'K*' }, 'Limit' : 1, 'Since' : i }) self.assertEqual(1, len(a)) b.append(a[0]) self.assertEqual(0, len(set(b) ^ set(knee))) def test_bitbucket_issue_46(self): # "PHI remaining after anonymization" # https://bugs.orthanc-server.com/show_bug.cgi?id=46 def GetAnonymizedTags(study, version): anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, { 'DicomVersion' : version }, 'application/json') ['ID'] a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) self.assertEqual(1, len(a)) instance = a[0]['ID'] return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' # Add the 0032,1033 (Requesting Service) and the 0010,1060 # (Patient's Mother's Birth Name) tags newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', 'application/json')['ID'] # Use Table E.1-1 from PS 3.15-2008 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf (instance, tags) = GetAnonymizedTags(newStudy, "2008") self.assertTrue('0032,1033' in tags) self.assertTrue('0010,1060' in tags) # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf (instance, tags) = GetAnonymizedTags(newStudy, "2017c") self.assertFalse('0032,1033' in tags) self.assertFalse('0010,1060' in tags) t = {} for (key, value) in tags.iteritems(): t[value['Name']] = value['Value'] self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared self.assertFalse('SeriesDate' in t) # Type 3 tag => null self.assertFalse('SeriesTime' in t) # Type 3 tag => null with tempfile.NamedTemporaryFile(delete = True) as f: # Run "dciodvfy" on the anonymized file to be sure it is still valid f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) f.flush() subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], stderr = subprocess.STDOUT).split('\n') def test_bitbucket_issue_55(self): def Run(modify, query): self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) operation = 'modify' if modify else 'anonymize' self.assertRaises(Exception, lambda: DoPost( _REMOTE, '/studies/%s/%s' % (study, operation), query)) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) query["Force"] = True a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, a) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) UploadInstance(_REMOTE, 'DummyCT.dcm') study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) Run(False, { "Keep" : [ "StudyInstanceUID" ]}) Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) Run(False, { "Keep" : [ "SOPInstanceUID" ]}) Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) def test_bitbucket_issue_56(self): # Case-insensitive matching over accents. This test assumes # that the "CaseSensitivePN" configuration option of Orthanc # is set to "false" (default value). # https://bugs.orthanc-server.com/show_bug.cgi?id=56 def Check(name, expected, expectedSensitive): a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 '-k', '0008,0052=PATIENT', '-k', 'PatientName=%s' % name ]) patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) self.assertEqual(expected, len(patientNames)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'CaseSensitive' : False, 'Query' : { 'PatientName' : name }}) self.assertEqual(expected, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'CaseSensitive' : True, 'Query' : { 'PatientName' : name }}) self.assertEqual(expectedSensitive, len(a)) # SpecificCharacterSet = ISO_IR 100 (Latin1), PatientName=Test-éüäöò UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') # WildcardConstraint Check('TeSt*', 1, 0) Check('TeSt-a*', 0, 0) Check('TeSt-É*', 1, 0) Check('TeSt-é*', 1, 0) Check('Test-é*', 1, 1) # ListConstraint Check('Test-éüäöò\\nope', 1, 1) Check('Test-ÉÜÄÖÒ\\nope', 1, 0) # ValueConstraint Check('Test-éüäöò', 1, 1) Check('Test-ÉÜÄÖÒ', 1, 0) def test_gbk_alias(self): # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ # This test fails on Orthanc <= 1.3.0 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) self.assertEqual(tags['PatientName'], u'徐浩凯') self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') def test_long_tag(self): i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' tags = DoGet(_REMOTE, '/instances/%s/tags' % i) self.assertTrue('0018,1020' in tags) self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) self.assertEqual('TooLong', tags['0018,1020']['Type']) self.assertEqual(None, tags['0018,1020']['Value']) tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) self.assertTrue('0018,1020' in tags) self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) self.assertEqual('String', tags['0018,1020']['Type']) self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) self.assertTrue('SoftwareVersions' in tags) self.assertEqual(None, tags['SoftwareVersions']) self.assertTrue('HeartRate' in tags) self.assertEqual(474, int(tags['HeartRate'])) tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) self.assertTrue('SoftwareVersions' in tags) self.assertEqual(None, tags['SoftwareVersions']) tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) self.assertTrue('SoftwareVersions' in tags) self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) self.assertTrue('SoftwareVersions' in tags) self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) self.assertEqual(1, len(tags)) self.assertTrue(i in tags.keys()) self.assertTrue('0018,1020' in tags[i]) self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) self.assertEqual(1, len(tags)) self.assertTrue(i in tags.keys()) self.assertTrue('0018,1020' in tags[i]) self.assertEqual('String', tags[i]['0018,1020']['Type']) self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) def test_extended_media(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) self.assertEqual(2, len(z.namelist())) self.assertTrue('IMAGES/IM0' in z.namelist()) self.assertTrue('DICOMDIR' in z.namelist()) try: os.remove('/tmp/DICOMDIR') except: # The file does not exist pass z.extract('DICOMDIR', '/tmp') a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], stderr = subprocess.STDOUT).split('\n') self.assertEqual(5, len(a)) self.assertTrue(a[0].startswith('Warning')) self.assertEqual('BasicDirectory', a[1]) self.assertTrue('not present in standard DICOM IOD' in a[2]) self.assertTrue('not present in standard DICOM IOD' in a[3]) self.assertEqual('', a[4]) a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], stderr = subprocess.STDOUT).split('\n') self.assertEqual(1, len(a)) self.assertEqual('', a[0]) a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) # Check the presence of the series description (extended tag) self.assertTrue(re.search('T1W_aTSE', a) != None) os.remove('/tmp/DICOMDIR') def test_anonymize_relationships_1(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, '{}', 'application/json')['ID'] a = DoGet(_REMOTE, '/studies/%s/instances' % study) self.assertEqual(2, len(a)) a1 = a[0]['ID'] a2 = a[1]['ID'] b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) self.assertEqual(2, len(b)) b1 = b[0]['ID'] b2 = b[1]['ID'] SEQUENCE = '/instances/%s/content/ReferencedImageSequence' SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' FRAME = '/instances/%s/content/FrameOfReferenceUID' self.assertEqual(DoGet(_REMOTE, FRAME % a1), DoGet(_REMOTE, FRAME % a2)) self.assertEqual(DoGet(_REMOTE, FRAME % b1), DoGet(_REMOTE, FRAME % b2)) self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), DoGet(_REMOTE, FRAME % b1)) self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), DoGet(_REMOTE, FRAME % b2)) self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) for i in range(3): self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), DoGet(_REMOTE, SOP % (a2, i))) self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), DoGet(_REMOTE, SOP % (b2, i))) self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), DoGet(_REMOTE, SOP % (b1, i))) self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), DoGet(_REMOTE, SOP % (b2, i))) self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), DoGet(_REMOTE, CLASS % (b1, i))) self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), DoGet(_REMOTE, CLASS % (b2, i))) def test_anonymize_relationships_2(self): UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, '{}', 'application/json')['ID'] a = DoGet(_REMOTE, '/studies/%s/instances' % study) self.assertEqual(2, len(a)) a1 = a[0]['ID'] a2 = a[1]['ID'] b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) self.assertEqual(2, len(b)) b1 = b[0]['ID'] b2 = b[1]['ID'] SEQUENCE = '/instances/%s/content/SourceImageSequence' SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), DoGet(_REMOTE, SOP % (a2, 0))) self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), DoGet(_REMOTE, SOP % (b2, 0))) self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), DoGet(_REMOTE, SOP % (b1, 0))) self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), DoGet(_REMOTE, SOP % (b2, 0))) self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), DoGet(_REMOTE, CLASS % (b1, 0))) self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), DoGet(_REMOTE, CLASS % (b2, 0))) def test_anonymize_relationships_3(self): sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, { "Keep" : [ "ContentSequence" ] }) ['ID'] a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) self.assertEqual(2, len(a)) if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': sr2 = a[0]['ID'] mr2 = a[1]['ID'] else: sr2 = a[1]['ID'] mr2 = a[0]['ID'] self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' PATH2 = PATH1 + '/0/ReferencedSeriesSequence' PATH3 = PATH2 + '/0/ReferencedSOPSequence' PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' PATH5 = PATH3 + '/0/ReferencedSOPClassUID' self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] self.assertEqual(str(content1), str(content2)) def test_bitbucket_issue_94(self): # "a simple instance modification should not modify FrameOfReferenceUID + ..." # https://bugs.orthanc-server.com/show_bug.cgi?id=94 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) modified = DoPost(_REMOTE, '/instances/%s/modify' % i, { "Replace" : {"PatientID" : "toto"}, "Force": True}) anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) self.assertEqual(1, len(a)) b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) self.assertEqual(1, len(b)) c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) self.assertEqual(1, len(c)) self.assertEqual(a, b) # Modified DICOM self.assertNotEqual(a, c) # Anonymized DICOM def test_metadata_origin(self): # Upload using the REST API i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) # "HttpUsername" is empty iff "AuthenticationEnabled" is "false" self.assertTrue(DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i) in [ '', 'alice' ]) m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) self.assertEqual('RestApi', m['Origin']) self.assertEqual('', m['RemoteAET']) self.assertNotEqual('', m['RemoteIP']) self.assertFalse('CalledAET' in m) self.assertTrue('HttpUsername' in m) self.assertTrue(m['HttpUsername'] in [ '', 'alice' ]) self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) self.assertEqual('1', m['IndexInSeries']) self.assertTrue('ReceptionDate' in m) DoDelete(_REMOTE, '/instances/%s' % i) # Upload using the DICOM protocol subprocess.check_call([ FindExecutable('storescu'), _REMOTE['Server'], str(_REMOTE['DicomPort']), GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), '-xw' ]) # Propose JPEG2000 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) self.assertEqual('DicomProtocol', m['Origin']) self.assertEqual('STORESCU', m['RemoteAET']) self.assertNotEqual('', m['RemoteIP']) self.assertEqual('ANY-SCP', m['CalledAET']) self.assertFalse('HttpUsername' in m) self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) self.assertEqual('1', m['IndexInSeries']) self.assertTrue('ReceptionDate' in m) def test_lua_deadlock(self): # Rana Asim Wajid (2018-07-14): "It does seem that the issue # is with the lua script I'm using for conversion of images to # JPEG2000. When the script is used with 1.4.0 the first # instance appears to be stored and then everything just # halts, ie Orthanc wont respond to anything after that." # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') subprocess.check_call([ FindExecutable('storescu'), _REMOTE['Server'], str(_REMOTE['DicomPort']), GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), ]) instances = DoGet(_REMOTE, '/instances') self.assertEqual(2, len(instances)) t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed self.assertEqual(t1, t2); def test_find_group_length(self): # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain # one of the Generic Group Length tags (*, 0x0000) a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) self.assertFalse('UnableToProcess' in result) self.assertFalse('E:' in result) def test_split(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') knee1Sop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' knee2Sop = '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) info = DoGet(_REMOTE, '/studies/%s' % study) self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) job = MonitorJob2(_REMOTE, lambda: DoPost (_REMOTE, '/studies/%s/split' % study, { 'Series' : [ t2 ], 'Replace' : { 'PatientName' : 'Hello' }, 'Remove' : [ 'ReferringPhysicianName' ], 'KeepSource' : False, 'Asynchronous' : True })) self.assertNotEqual(None, job) studies = set(DoGet(_REMOTE, '/studies')) self.assertEqual(2, len(studies)) series = set(DoGet(_REMOTE, '/series')) self.assertEqual(2, len(series)) self.assertTrue(t1 in series) study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] self.assertTrue(study in studies) self.assertTrue(study2 in studies) info = DoGet(_REMOTE, '/studies/%s' % study2) self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) sopInstanceUids = set() for i in DoGet(_REMOTE, '/instances?expand'): sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) self.assertTrue(knee1Sop in sopInstanceUids) # Fails if Orthanc <= 1.5.7 self.assertFalse(knee2Sop in sopInstanceUids) # Because "KeepSource" is False # One original instance is kept, another one is added because of the split self.assertEqual(2, len(sopInstanceUids)) def test_merge(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') kneeSop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' brainixSop = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) job = MonitorJob2(_REMOTE, lambda: DoPost (_REMOTE, '/studies/%s/merge' % knee, { 'Resources' : [ brainix ], 'KeepSource' : True, 'Synchronous' : False })) self.assertNotEqual(None, job) studies = set(DoGet(_REMOTE, '/studies')) self.assertEqual(2, len(studies)) self.assertTrue(knee in studies) self.assertTrue(brainix in studies) series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) self.assertTrue(t1 in series) series.remove(t1) self.assertEqual(1, len(series)) instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] self.assertEqual(1, len(instances)) merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] self.assertEqual(1, len(instances)) a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] self.assertEqual(1, len(instances)) b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) tags = DoGet(_REMOTE, '/studies/%s' % knee) for key in tags['PatientMainDicomTags']: self.assertEqual(a[key], merged[key]) if (key in b and key != 'PatientSex'): self.assertNotEqual(a[key], b[key]) for key in tags['MainDicomTags']: # Not in the patient/study module if (not key in [ 'InstitutionName', 'RequestingPhysician', 'RequestedProcedureDescription', ]): self.assertEqual(a[key], merged[key]) if (key in b): self.assertNotEqual(a[key], b[key]) sopInstanceUids = set() for i in DoGet(_REMOTE, '/instances?expand'): sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) self.assertTrue(kneeSop in sopInstanceUids) self.assertTrue(brainixSop in sopInstanceUids) # Fails if Orthanc <= 1.5.7 # The 2 original instances are kept, another one is added because of the merge self.assertEqual(3, len(sopInstanceUids)) def test_async_archive(self): # Testing the asynchronous generation of archives/medias (new # in Orthanc 1.4.3) UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' job = MonitorJob2(_REMOTE, lambda: DoPost (_REMOTE, '/series/%s/archive' % kneeT1, { 'Synchronous' : False })) z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) self.assertEqual(1, len(z.namelist())) self.assertFalse('DICOMDIR' in z.namelist()) info = DoGet(_REMOTE, '/jobs/%s' % job) self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 self.assertEqual(1, info['Content']['InstancesCount']) self.assertEqual(0, info['Content']['UncompressedSizeMB']) job2 = MonitorJob2(_REMOTE, lambda: DoPost (_REMOTE, '/series/%s/media' % kneeT1, { 'Synchronous' : False })) # The archive from the first job has been replaced by the # archive from second job (as MediaArchiveSize == 1) self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) self.assertEqual(2, len(z.namelist())) self.assertTrue('DICOMDIR' in z.namelist()) info = DoGet(_REMOTE, '/jobs/%s' % job2) self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 self.assertEqual(1, info['Content']['InstancesCount']) self.assertEqual(0, info['Content']['UncompressedSizeMB']) job = MonitorJob2(_REMOTE, lambda: DoPost (_REMOTE, '/tools/create-archive', { 'Synchronous' : False, 'Resources' : [ kneeT1, kneeT2 ], })) z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) self.assertEqual(2, len(z.namelist())) self.assertFalse('DICOMDIR' in z.namelist()) info = DoGet(_REMOTE, '/jobs/%s' % job) self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 self.assertEqual(2, info['Content']['InstancesCount']) self.assertEqual(0, info['Content']['UncompressedSizeMB']) job = MonitorJob2(_REMOTE, lambda: DoPost (_REMOTE, '/tools/create-media', { 'Synchronous' : False, 'Resources' : [ kneeT1, kneeT2 ], })) z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) self.assertEqual(3, len(z.namelist())) self.assertTrue('DICOMDIR' in z.namelist()) self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 self.assertEqual(2, info['Content']['InstancesCount']) self.assertEqual(0, info['Content']['UncompressedSizeMB']) def test_archive_job_delete_output(self): if IsOrthancVersionAbove(_REMOTE, 1, 12, 1): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' job = MonitorJob2(_REMOTE, lambda: DoPost (_REMOTE, '/series/%s/archive' % kneeT1, { 'Synchronous' : False })) z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) # delete the output DoDelete(_REMOTE, '/jobs/%s/archive' % job) # make sure it is not available anymore afterwards self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) # repeat with another resource/job job = MonitorJob2(_REMOTE, lambda: DoPost (_REMOTE, '/series/%s/archive' % kneeT2, { 'Synchronous' : False })) z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) # delete the output DoDelete(_REMOTE, '/jobs/%s/archive' % job) # make sure it is not available anymore afterwards self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) # job is still available DoGet(_REMOTE, '/jobs/%s' % job) if IsOrthancVersionAbove(_REMOTE, 1, 12, 2): # delete the job itself DoDelete(_REMOTE, '/jobs/%s' % job) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/jobs/%s' % job)) # test deletion of jobs in history job = MonitorJob2(_REMOTE, lambda: DoPost (_REMOTE, '/series/%s/archive' % kneeT2, { 'Synchronous' : False })) z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) # delete the job itself DoDelete(_REMOTE, '/jobs/%s' % job) # make sure it is not available anymore afterwards (and its output is not available either) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/jobs/%s' % job)) self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) def test_queries_hierarchy(self): UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') tags = { 'NumberOfPatientRelatedInstances' : '', 'NumberOfPatientRelatedSeries' : '', 'NumberOfPatientRelatedStudies' : '', 'NumberOfStudyRelatedInstances' : '', 'NumberOfStudyRelatedSeries' : '', 'NumberOfSeriesRelatedInstances' : '', } tags2 = copy.copy(tags) tags2['PatientID'] = '887' # Only consider the "Knee" patient patient = DoPost(_REMOTE, '/modalities/self/query', { 'Level' : 'Patient', 'Query' : tags2 }) ['ID'] study = DoPost(_REMOTE, '/modalities/self/query', { 'Level' : 'Study', 'Query' : tags2 }) ['ID'] series = DoPost(_REMOTE, '/modalities/self/query', { 'Level' : 'Series', 'Query' : tags2 }) ['ID'] instance = DoPost(_REMOTE, '/modalities/self/query', { 'Level' : 'Instance', 'Query' : tags2 }) ['ID'] p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) self.assertEqual(1, len(p)) self.assertEqual('887', p[0]['PatientID']) self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) self.assertEqual(1, len(p)) self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) self.assertEqual(1, len(p)) self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) self.assertEqual(1, len(p)) self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, { 'Query' : tags }) ['ID'] self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, { 'Query' : tags }) ['ID'] self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, { 'Query' : tags }) ['ID'] self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, { 'Query' : tags }) ['ID'] self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, { 'Query' : tags }) ['ID'] self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, { 'Query' : tags }) ['ID'] self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) def test_dicom_disk_size(self): dicomSize = 0 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') ['ID'] isCompressed = (DoGet(_REMOTE, '/instances/%s/attachments/dicom/is-compressed' % a) != 0) for i in range(2): p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) UploadInstance(_REMOTE, p) dicomSize += os.path.getsize(GetDatabasePath(p)) s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient self.assertEqual(2, s['CountInstances']) self.assertEqual(2, s['CountSeries']) self.assertEqual(1, s['CountStudies']) self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) if isCompressed: self.assertGreater(dicomSize, int(s['DicomDiskSize'])) self.assertGreater(s['UncompressedSize'], s['DiskSize']) self.assertLess(dicomSize, int(s['UncompressedSize'])) else: self.assertEqual(dicomSize, int(s['DicomDiskSize'])) self.assertEqual(s['UncompressedSize'], s['DiskSize']) if IsOrthancVersionAbove(_REMOTE, 1, 9, 1): if IsDicomUntilPixelDataStored(_REMOTE): self.assertLess(dicomSize, int(s['UncompressedSize'])) else: self.assertEqual(dicomSize, int(s['UncompressedSize'])) else: # In Orthanc <= 1.9.0, there is the "dicom-as-json" # attachment in addition to the DICOM file self.assertLess(dicomSize, int(s['UncompressedSize'])) def test_changes_2(self): # More consistent behavior since Orthanc 1.5.2 # https://groups.google.com/d/msg/orthanc-users/QhzB6vxYeZ0/YxabgqpfBAAJ # Make sure that this is not the first change self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, '/instances/%s' % a) # No more instance, but there were previous changes self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) c = DoGet(_REMOTE, '/changes') self.assertEqual(0, len(c['Changes'])) self.assertTrue(c['Done']) seq = c['Last'] c = DoGet(_REMOTE, '/changes?last') self.assertEqual(0, len(c['Changes'])) self.assertTrue(c['Done']) self.assertEqual(seq, c['Last']) c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) self.assertEqual(0, len(c['Changes'])) self.assertTrue(c['Done']) self.assertEqual(seq, c['Last']) # Add one instance UploadInstance(_REMOTE, 'DummyCT.dcm') self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) c = DoGet(_REMOTE, '/changes') self.assertEqual(4, len(c['Changes'])) self.assertTrue(c['Done']) self.assertEqual(seq + 4, c['Last']) c = DoGet(_REMOTE, '/changes?last') self.assertEqual(1, len(c['Changes'])) self.assertTrue(c['Done']) self.assertEqual(seq + 4, c['Last']) c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) self.assertEqual(0, len(c['Changes'])) self.assertTrue(c['Done']) self.assertEqual(seq + 4, c['Last']) # Add, then delete, one user-defined metadata: This triggers 2 # changes of type "UpdatedMetadata" i = DoGet(_REMOTE, '/instances') [0] DoPut(_REMOTE, '/instances/%s/metadata/4000' % i, 'hello', 'text/plain') (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/4000' % i) self.assertEqual('200', headers['status']) self.assertEqual('hello', body) c = DoGet(_REMOTE, '/changes?last') self.assertEqual(1, len(c['Changes'])) self.assertTrue(c['Done']) self.assertEqual(seq + 5, c['Last']) self.assertEqual('UpdatedMetadata', c['Changes'][0]['ChangeType']) if IsOrthancVersionAbove(_REMOTE, 1, 9, 2): DoDelete(_REMOTE, '/instances/%s/metadata/4000' % i, headers = { 'If-Match' : headers['etag'] }) else: self.assertFalse('etag' in headers) DoDelete(_REMOTE, '/instances/%s/metadata/4000' % i) c = DoGet(_REMOTE, '/changes?last') self.assertEqual(1, len(c['Changes'])) self.assertTrue(c['Done']) self.assertEqual(seq + 6, c['Last']) self.assertEqual('UpdatedMetadata', c['Changes'][0]['ChangeType']) # Remove the uploaded instance DoDelete(_REMOTE, '/instances/%s' % a) self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) c = DoGet(_REMOTE, '/changes') self.assertEqual(0, len(c['Changes'])) self.assertTrue(c['Done']) self.assertEqual(seq + 6, c['Last']) c = DoGet(_REMOTE, '/changes?last') self.assertEqual(0, len(c['Changes'])) self.assertTrue(c['Done']) self.assertEqual(seq + 6, c['Last']) c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) self.assertEqual(0, len(c['Changes'])) self.assertTrue(c['Done']) self.assertEqual(seq + 6, c['Last']) def test_bitbucket_issue_124(self): a = UploadInstance(_REMOTE, 'Issue124.dcm')['ID'] s = DoGet(_REMOTE, '/instances/%s/series' % a)['ID'] z = GetArchive(_REMOTE, '/series/%s/media' % s) self.assertEqual(2, len(z.namelist())) def test_invalid_findscp(self): UploadInstance(_REMOTE, 'DummyCT.dcm') findscu = CallFindScu([ '-S', '-k', '8,52=IMAGE', '-k', '8,16', '-k', '2,2' ]) self.assertEqual(0, len(re.findall('\(0002,0002\)', findscu))) def test_bitbucket_issue_90(self): def CountDicomResults(sex): a = CallFindScu([ '-S', '-k', '8,52=STUDY', '-k', sex ]) return len(re.findall('\(0010,0040\)', a)) def CountRestResults(sex): a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { 'PatientSex' : sex } }) return len(a) # Just like the "CR000000.dcm" of the issue, the test image # "DummyCT.dcm" has the tag PatientSex (0010,0040) unset UploadInstance(_REMOTE, 'DummyCT.dcm') # Test that the behavior of DICOM vs. REST API is consistent on missing tags # In wildcard constraints, the patient sex must be set for a match to occur self.assertEqual(0, CountDicomResults('PatientSex=*')) self.assertEqual(0, CountRestResults('*')) # In single-valued constraints, the patient sex must be set self.assertEqual(0, CountDicomResults('PatientSex=F')) self.assertEqual(0, CountDicomResults('PatientSex=M')) self.assertEqual(0, CountRestResults('F')) self.assertEqual(0, CountRestResults('M')) # Empty constraints are only used to ask the actual value of # the tag to be added to the *answer*. The tag should not used # as a filter in such a situation. self.assertEqual(1, CountDicomResults('PatientSex')) self.assertEqual(1, CountDicomResults('PatientSex=')) self.assertEqual(1, CountRestResults('')) # This check fails on Orthanc <= 1.5.2 (issue 90) def test_rest_modalities_in_study(self): # Tests a regression that is present in Orthanc 1.5.2 and 1.5.3 # https://groups.google.com/d/msg/orthanc-users/7lZyG3wpx-M/uOXzAzVCFwAJ UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { 'ModalitiesInStudy' : 'US' }}) self.assertEqual(0, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { 'ModalitiesInStudy' : 'US\\CT' }}) self.assertEqual(1, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { 'ModalitiesInStudy' : 'CT' }}) self.assertEqual(1, len(a)) def test_series_status(self): def HasCompletedInChanges(): for c in DoGet(_REMOTE, '/changes?limit=1000&since=0')['Changes']: if c['ChangeType'] == 'CompletedSeries': return True; return False UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') series = '8ea120d7-5057d919-837dfbcc-ccd04e0f-7f3a94aa' self.assertEqual('Unknown', DoGet(_REMOTE, '/series/%s' % series)['Status']) self.assertFalse(HasCompletedInChanges()) series = 'ce25ecb6-ed79d004-5ae43ca7-3fc89bc5-67511614' for i in range(3): UploadInstance(_REMOTE, 'Series/Lena-%d.dcm' % (i + 1)) self.assertEqual('Missing', DoGet(_REMOTE, '/series/%s' % series)['Status']) self.assertFalse(HasCompletedInChanges()) UploadInstance(_REMOTE, 'Series/Lena-4.dcm') self.assertEqual('Complete', DoGet(_REMOTE, '/series/%s' % series)['Status']) self.assertTrue(HasCompletedInChanges()) DoDelete(_REMOTE, '/changes') self.assertFalse(HasCompletedInChanges()) UploadInstance(_REMOTE, 'Series/Lena-5.dcm') self.assertEqual('Inconsistent', DoGet(_REMOTE, '/series/%s' % series)['Status']) self.assertFalse(HasCompletedInChanges()) def test_dicomweb(self): def Compare(dicom, reference): a = UploadInstance(_REMOTE, dicom) ['ID'] b = DoGet(_REMOTE, '/instances/%s/file' % a, headers = { 'Accept' : 'application/dicom+json' }) with open(GetDatabasePath(reference), 'rb') as c: d = json.load(c) AssertAlmostEqualRecursive(self, d, b) Compare('DummyCT.dcm', 'DummyCT.json') Compare('MarekLatin2.dcm', 'MarekLatin2.json') Compare('HierarchicalAnonymization/StructuredReports/IM0', 'HierarchicalAnonymization/StructuredReports/IM0.json') def test_issue_95_encodings(self): # https://bugs.orthanc-server.com/show_bug.cgi?id=95 # Check out image: "../Database/Encodings/DavidClunie/charsettests.screenshot.png" # Very useful tool: "file2" from package "file-kanji" def GetPatientName(dicom): i = UploadInstance(_REMOTE, dicom) ['ID'] j = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) return j['PatientName'] def ComparePatientName(name, dicom): self.assertEqual(name, GetPatientName(dicom)) # gdcmraw -t 10,10 -i SCSFREN -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo ComparePatientName(u'Buc^Jérôme', 'Encodings/DavidClunie/SCSFREN') # gdcmraw -t 10,10 -i SCSI2 -o /tmp/tag && uconv -f KOREAN -t UTF-8 /tmp/tag && echo ComparePatientName(u'Hong^Gildong=洪^吉洞=홍^길동', 'Encodings/DavidClunie/SCSI2') # Since Orthanc 1.5.5 # gdcmraw -t 10,10 -i SCSX2 -o /tmp/tag && uconv -f GB18030 -t UTF-8 /tmp/tag && echo ComparePatientName(u'Wang^XiaoDong=王^小东=', 'Encodings/DavidClunie/SCSX2') # gdcmraw -t 10,10 -i SCSX1 -o /tmp/tag && cat /tmp/tag && echo ComparePatientName(u'Wang^XiaoDong=王^小東=', 'Encodings/DavidClunie/SCSX1') # gdcmraw -t 10,10 -i SCSH31 -o /tmp/tag && uconv -f JIS -t UTF-8 /tmp/tag && echo ComparePatientName(u'Yamada^Tarou=山田^太郎=やまだ^たろう', 'Encodings/DavidClunie/SCSH31') # gdcmraw -t 10,10 -i SCSGERM -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo ComparePatientName(u'Äneas^Rüdiger', 'Encodings/DavidClunie/SCSGERM') # gdcmraw -t 10,10 -i SCSGREEK -o /tmp/tag && uconv -f ISO-IR-126 -t UTF-8 /tmp/tag && echo ComparePatientName(u'Διονυσιος', 'Encodings/DavidClunie/SCSGREEK') # gdcmraw -t 10,10 -i SCSRUSS -o /tmp/tag && uconv -f ISO-IR-144 -t UTF-8 /tmp/tag && echo ComparePatientName(u'Люкceмбypг', 'Encodings/DavidClunie/SCSRUSS') # gdcmraw -t 10,10 -i SCSHBRW -o /tmp/tag && uconv -f ISO-IR-138 -t UTF-8 /tmp/tag && echo # NB: Hebrew is a right-to-left encoding, copying/pasting from # Linux console into Emacs automatically reverse the string ComparePatientName(u'שרון^דבורה', 'Encodings/DavidClunie/SCSHBRW') # gdcmraw -t 10,10 -i SCSARAB -o /tmp/tag && uconv -f ISO-IR-127 -t UTF-8 /tmp/tag && echo # NB: Right-to-left as for Hebrew (SCSHBRW), and the Ubuntu console can't display such # characters by default, but copy/paste works with Emacs ComparePatientName(u'قباني^لنزار', 'Encodings/DavidClunie/SCSARAB') # SCSH32: This SpecificCharacterSet is composed of 2 # codepages: "ISO 2022 IR 13" (i.e. "SHIFT_JIS") until the # first equal, then "ISO 2022 IR 87" (i.e. "JIS") for the # remainer. Orthanc only takes into consideration the first # codepage: This is a limitation. # gdcmraw -t 10,10 -i SCSH32 -o /tmp/tag && cut -d '=' -f 1 /tmp/tag | uconv -f SHIFT_JIS -t UTF-8 self.assertTrue(GetPatientName('Encodings/DavidClunie/SCSH32').startswith(u'ﾔﾏﾀﾞ^ﾀﾛｳ=')) def test_findscu_missing_tags(self): # dcmodify -e Rows DummyCTInvalidRows.dcm -gst -gse -gin UploadInstance(_REMOTE, 'DummyCT.dcm') UploadInstance(_REMOTE, 'DummyCTInvalidRows.dcm') i = CallFindScu([ '-k', '0008,0052=IMAGES', '-k', 'Rows', '-k', 'PatientName' ]) # We have 2 instances... patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) self.assertEqual(2, len(patientNames)) self.assertEqual('KNIX', patientNames[0]) self.assertEqual('KNIX', patientNames[1]) # ...but only 1 value for the "Rows" tag rows = re.findall('\(0028,0010\) US ([0-9]+)', i) self.assertEqual(1, len(rows)) self.assertEqual('512', rows[0]) def test_bitbucket_issue_131(self): # "Orthanc PACS silently fails to C-MOVE due to duplicate # StudyInstanceUID in it's database." # https://bugs.orthanc-server.com/show_bug.cgi?id=131 # Insert 2 instances, with the same StudyInstanceUID, but with # different patient IDs. Orthanc will create 2 distincts # patients, and the hierarchy of resources above the two # instances will be fully disjoint. UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-a.dcm') UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-b.dcm') self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) a = DoPost(_REMOTE, '/modalities/self/query', { 'Level' : 'Study', 'Query' : {"PatientID": "A" }})['ID'] # 1 study is matched self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) WaitAllNewJobsDone(_REMOTE, lambda: DoPost (_REMOTE, '/queries/%s/retrieve' % a, '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) # The two studies are matched, as we made the request at the # Study level, thus the shared StudyInstanceUID is used as the key self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) # Match the 2 studies a = DoPost(_REMOTE, '/modalities/self/query', { 'Level' : 'Study', 'Query' : {"StudyInstanceUID": "2.25.123" }})['ID'] self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) DropOrthanc(_LOCAL) self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) WaitAllNewJobsDone(_REMOTE, lambda: DoPost (_REMOTE, '/queries/%s/retrieve' % a, '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) # Same test, at the patient level => only 1 instance is transfered a = DoPost(_REMOTE, '/modalities/self/query', { 'Level' : 'Patient', 'Query' : {"PatientID": "A" }})['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) DropOrthanc(_LOCAL) self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) WaitAllNewJobsDone(_REMOTE, lambda: DoPost (_REMOTE, '/queries/%s/retrieve' % a, '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) # Same test, at the series level => only 1 instance is transfered a = DoPost(_REMOTE, '/modalities/self/query', { 'Level' : 'Series', 'Query' : {"PatientID": "A" }})['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) DropOrthanc(_LOCAL) self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) WaitAllNewJobsDone(_REMOTE, lambda: DoPost (_REMOTE, '/queries/%s/retrieve' % a, '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) def test_bitbucket_issue_136(self): UploadInstance(_REMOTE, 'Issue137.dcm') i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0010,0010', '-k', '0028,0010', '-k', '0040,0275' ]) patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) self.assertEqual(1, len(patientNames)) self.assertEqual('John Doe', patientNames[0]) def test_anonymize_relationships_4(self): # https://groups.google.com/d/msg/orthanc-users/UkcsqyTpszE/bXUpzU0vAAAJ sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/CR000000.dcm')['ID'] mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/PR000000.dcm')['ID'] study = '0c923249-d52121a9-2b7167f7-6b85534f-0943697e' anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, '{}', 'application/json')['ID'] series = DoGet(_REMOTE, '/studies/%s/series' % anonymized) self.assertEqual(2, len(series)) cr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CR', series)) pr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'PR', series)) self.assertEqual(1, len(cr)) self.assertEqual(1, len(pr)) self.assertEqual(1, len(cr[0]['Instances'])) self.assertEqual(1, len(pr[0]['Instances'])) crinstance = DoGet(_REMOTE, '/instances/%s' % cr[0]['Instances'][0]) tags = DoGet(_REMOTE, '/instances/%s/tags?short' % pr[0]['Instances'][0]) self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1155'], crinstance['MainDicomTags']['SOPInstanceUID']) self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1150'], '1.2.840.10008.5.1.4.1.1.1') # SOP class for CR Image Storage # This fails on Orthanc <= 1.5.6 self.assertEqual(tags['0008,1115'][0]['0020,000e'], cr[0]['MainDicomTags']['SeriesInstanceUID']) def test_anonymize_relationships_5(self): ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') oStudyId = ct1['ParentStudy'] oCtInstanceId = ct1['ID'] oRtInstanceId = rt1['ID'] oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) # first validate the relationships in the source data oStudyUID = oCtTags['StudyInstanceUID'] oRtSeriesUID = oRtTags['SeriesInstanceUID'] oRtInstanceUID = oRtTags['SOPInstanceUID'] oRtFrameOfReferenceUID = oRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] oCtSeriesUID = oCtTags['SeriesInstanceUID'] oCtInstanceUID = oCtTags['SOPInstanceUID'] oCtFrameOfReferenceUID = oCtTags['FrameOfReferenceUID'] oContourSequenceCount = len(oRtTags['ROIContourSequence'][0]['ContourSequence']) self.assertEqual(oCtFrameOfReferenceUID, oRtFrameOfReferenceUID) self.assertEqual(oStudyUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) self.assertEqual(oCtSeriesUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) self.assertEqual(oCtInstanceUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) self.assertEqual(oCtInstanceUID, oRtTags['ROIContourSequence'][0]['ContourSequence'][oContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) ### anonymize aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{}', 'application/json')['ID'] ### validate aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) self.assertEqual(2, len(aSeries)) aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) aCtInstanceId = aCt[0]['Instances'][0] aRtInstanceId = aRt[0]['Instances'][0] aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) # now validate the relationships in the anonymized data aStudyUID = aCtTags['StudyInstanceUID'] aRtSeriesUID = aRtTags['SeriesInstanceUID'] aRtInstanceUID = aRtTags['SOPInstanceUID'] aRtFrameOfReferenceUID = aRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] aCtSeriesUID = aCtTags['SeriesInstanceUID'] aCtInstanceUID = aCtTags['SOPInstanceUID'] aCtFrameOfReferenceUID = aCtTags['FrameOfReferenceUID'] aContourSequenceCount = len(aRtTags['ROIContourSequence'][0]['ContourSequence']) # make sure all UIDs have been updated self.assertNotEqual(oStudyUID, aStudyUID) self.assertNotEqual(oRtSeriesUID, aRtSeriesUID) self.assertNotEqual(oRtInstanceUID, aRtInstanceUID) self.assertNotEqual(oRtFrameOfReferenceUID, aRtFrameOfReferenceUID) self.assertNotEqual(oCtSeriesUID, aCtSeriesUID) self.assertNotEqual(oCtInstanceUID, aCtInstanceUID) self.assertNotEqual(oCtFrameOfReferenceUID, aCtFrameOfReferenceUID) # validate the relationships self.assertEqual(oContourSequenceCount, aContourSequenceCount) self.assertEqual(aCtFrameOfReferenceUID, aRtFrameOfReferenceUID) self.assertEqual(aStudyUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) self.assertEqual(aCtSeriesUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) self.assertEqual(aCtInstanceUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) self.assertEqual(aCtInstanceUID, aRtTags['ROIContourSequence'][0]['ContourSequence'][aContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) def test_anonymize_relationships_5b(self): # same test as previous one but, this time, we force the StudyInstanceUID ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') oStudyId = ct1['ParentStudy'] oCtInstanceId = ct1['ID'] oRtInstanceId = rt1['ID'] oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) ### anonymize while forcing the StudyInstanceUID aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{ "Replace" : { "StudyInstanceUID" : "1.2.3.4"}, "Force": true}', 'application/json')['ID'] ### validate aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) self.assertEqual(2, len(aSeries)) aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) aCtInstanceId = aCt[0]['Instances'][0] aRtInstanceId = aRt[0]['Instances'][0] aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) self.assertEqual("1.2.3.4", aCtTags['StudyInstanceUID']) self.assertEqual("1.2.3.4", aRtTags['StudyInstanceUID']) self.assertEqual("1.2.3.4", aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) def test_bitbucket_issue_140(self): # "Modifying private tags with REST API changes VR from LO to # UN." This test fails if DCMTK <= 3.6.1 (e.g. fails on Ubuntu 16.04). # https://bugs.orthanc-server.com/show_bug.cgi?id=140 source = UploadInstance(_REMOTE, 'Issue140.dcm') ['ID'] series = DoGet(_REMOTE, '/instances/%s' % source) ['ParentSeries'] target = DoPost(_REMOTE, '/series/%s/modify' % series, { 'Replace' : { 'RadioButton3' : 'aaabbbccc' }, 'PrivateCreator' : 'RadioLogic', # <= the trick is here }, 'application/json') ['ID'] instances = DoGet(_REMOTE, '/series/%s/instances' % target) self.assertEqual(1, len(instances)) tags = DoGet(_REMOTE, '/instances/%s/tags' % source) t = tags['4321,1012'] self.assertEqual('String', t['Type']) self.assertEqual('RadioButton3', t['Name']) self.assertEqual('RadioLogic', t['PrivateCreator']) self.assertEqual('jklmopq', t['Value']) tags = DoGet(_REMOTE, '/instances/%s/tags' % instances[0]['ID']) t = tags['4321,1012'] self.assertEqual('String', t['Type']) # This fails if DCMTK <= 3.6.1 self.assertEqual('RadioButton3', t['Name']) self.assertEqual('RadioLogic', t['PrivateCreator']) self.assertEqual('aaabbbccc', t['Value']) def test_find_normalize(self): # https://groups.google.com/d/msg/orthanc-users/AIwooGjsh94/YL28MNY4AgAJ UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') a = DoPost(_REMOTE, '/modalities/self/query', { 'Level' : 'Instance', 'Query' : { 'Rows' : '42' } }) ['ID'] b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) self.assertEqual(1, len(b)) self.assertFalse('Rows' in b[0]) a = DoPost(_REMOTE, '/modalities/self/query', { 'Level' : 'Instance', 'Query' : { 'Rows' : '42' }, 'Normalize' : False }) ['ID'] b = DoGet(_REMOTE, '/queries/%s/answers' % a) self.assertEqual(0, len(b)) a = DoPost(_REMOTE, '/modalities/self/query', { 'Level' : 'Instance', 'Query' : { 'Rows' : '512' }, 'Normalize' : False }) ['ID'] b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) self.assertEqual(1, len(b)) self.assertTrue('Rows' in b[0]) self.assertEqual('512', b[0]['Rows']) a = DoPost(_REMOTE, '/modalities/self/query', { 'Level' : 'Instance', 'Query' : { 'Rows' : '' }, 'Normalize' : False }) ['ID'] b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) self.assertEqual(1, len(b)) self.assertTrue('Rows' in b[0]) self.assertEqual('512', b[0]['Rows']) self.assertRaises(Exception, lambda: DoPost( _REMOTE, '/modalities/self/query', { 'Level' : 'Instance', 'Query' : { 'Rows' : '*' }, # Out-of-range value 'Normalize' : False })) def test_bitbucket_issue_141(self): # https://bugs.orthanc-server.com/show_bug.cgi?id=141 a = UploadInstance(_REMOTE, 'Issue141.dcm') ['ID'] study = '494c8037-b237f263-d8f15075-c8cb2280-daf39bd1' with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: pdf = f.read() b = DoPost(_REMOTE, '/tools/create-dicom', { 'Parent' : study, 'Tags' : {}, 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) }) ['ID'] tagsA = DoGet(_REMOTE, '/instances/%s/tags?short' % a) tagsB = DoGet(_REMOTE, '/instances/%s/tags?short' % b) self.assertEqual(tagsA['0008,0005'], tagsB['0008,0005']) self.assertEqual(tagsA['0008,1030'], tagsB['0008,1030']) def test_modifying_missing_patientid(self): # https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') DoPost(_REMOTE, '/studies/0c4aca1d-c107a241-6659d6aa-594c674a-a468b94a/modify', {}) def test_log_level(self): # https://bugs.orthanc-server.com/show_bug.cgi?id=65 original = DoGet(_REMOTE, '/tools/log-level') DoPut(_REMOTE, '/tools/log-level', 'default') self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level')) DoGet(_REMOTE, '/system') DoPut(_REMOTE, '/tools/log-level', 'verbose') self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level')) DoGet(_REMOTE, '/system') DoPut(_REMOTE, '/tools/log-level', 'trace') self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level')) DoGet(_REMOTE, '/system') self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level', 'nope')) # Switch back to the original log level DoPut(_REMOTE, '/tools/log-level', original) def test_upload_compressed(self): # New in Orthanc 1.6.0 with open(GetDatabasePath('DummyCT.dcm.gz'), 'rb') as f: d = f.read() self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom')) self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom', headers = { 'Content-Encoding' : 'nope' })) a = DoPost(_REMOTE, '/instances', d, 'application/dicom', headers = { 'Content-Encoding' : 'gzip' }) self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a['ID']) def test_study_series_find_inconsistency(self): # https://groups.google.com/forum/#!topic/orthanc-users/bLv6Z11COy0 def CountAnswers(query): a = DoPost(_REMOTE, 'modalities/self/query', query) return len(DoGet(_REMOTE, '%s/answers' % a['Path'])) # This instance has "SeriesDescription" (0008,103e) tag, but no # "ProtocolName" (0018,1030). Both of those tags are part of # the "main DICOM tags" of Orthanc. UploadInstance(_REMOTE, 'Issue137.dcm') self.assertEqual(1, CountAnswers({ 'Level' : 'Study', })) self.assertEqual(1, CountAnswers({ 'Level' : 'Series', })) ## ## "SeriesDescription" is present, and has VR "CS" => wildcard is allowed ## http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.4.html ## # At the study level, the "SeriesDescription" tag is not allowed, but # is wiped out by the normalization self.assertEqual(0, CountAnswers({ 'Level' : 'Study', 'Query' : { 'SeriesDescription' : 'NOPE' }, 'Normalize' : False })) self.assertEqual(0, CountAnswers({ # This test fails on Orthanc <= 1.5.8 'Level' : 'Study', 'Query' : { 'SeriesDescription' : '*' # Wildcard matching => no match, as the tag is absent }, 'Normalize' : False })) self.assertEqual(1, CountAnswers({ 'Level' : 'Study', 'Query' : { 'SeriesDescription' : 'THIS^VALUE^IS^WIPED^OUT' }, 'Normalize' : True })) self.assertEqual(1, CountAnswers({ 'Level' : 'Study', 'Query' : { 'SeriesDescription' : '*' # Matches, as wiped out by the normalization }, 'Normalize' : True })) for normalize in [ True, False ]: # At the series level, the "SeriesDescription" tag is allowed, and # normalization has no effect # "Universal matching" will match all entities, including # those with the missing tag # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html self.assertEqual(1, CountAnswers({ 'Level' : 'Series', 'Query' : { 'SeriesDescription' : '' # Universal matching }, 'Normalize' : normalize, })) # "Universal matching" will match all entities, including # those with the missing tag # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html self.assertEqual(1, CountAnswers({ 'Level' : 'Series', 'Query' : { 'SeriesDescription' : '*' # Wildcard matching }, 'Normalize' : normalize, })) self.assertEqual(1, CountAnswers({ 'Level' : 'Series', 'Query' : { 'SeriesDescription' : '*model*' # The actual value is "STL model: intraop Report" }, 'Normalize' : normalize, })) self.assertEqual(0, CountAnswers({ 'Level' : 'Series', 'Query' : { 'SeriesDescription' : '*MISMATCHED^VALUE*' }, 'Normalize' : normalize, })) # Universal matching matches any instance, even if the # query is at the study-level, and thus if "SeriesDescription" # makes no sense self.assertEqual(1, CountAnswers({ 'Level' : 'Study', 'Query' : { 'SeriesDescription' : '' # Universal matching }, 'Normalize' : normalize, })) ## ## "ProtocolName" is absent, and has VR "CS" => wildcard is allowed ## # At the study level, the "ProtocolName" tag is not allowed, but # is wiped out by the normalization self.assertEqual(0, CountAnswers({ 'Level' : 'Study', 'Query' : { 'ProtocolName' : 'NOPE' }, 'Normalize' : False })) self.assertEqual(0, CountAnswers({ 'Level' : 'Study', 'Query' : { 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent }, 'Normalize' : False })) self.assertEqual(1, CountAnswers({ 'Level' : 'Study', 'Query' : { 'ProtocolName' : 'THIS^VALUE^IS^WIPED^OUT' }, 'Normalize' : True })) self.assertEqual(1, CountAnswers({ 'Level' : 'Study', 'Query' : { 'ProtocolName' : '*' # Matches, as wiped out by the normalization }, 'Normalize' : True })) for normalize in [ True, False ]: # At the series level, the "ProtocolName" tag is allowed, and # normalization has no effect self.assertEqual(1, CountAnswers({ 'Level' : 'Series', 'Query' : { 'ProtocolName' : '' # Universal matching }, 'Normalize' : normalize, })) self.assertEqual(0, CountAnswers({ 'Level' : 'Series', 'Query' : { 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent }, 'Normalize' : normalize, })) self.assertEqual(0, CountAnswers({ 'Level' : 'Series', 'Query' : { 'ProtocolName' : '*MISMATCHED^VALUE*' }, 'Normalize' : normalize, })) self.assertEqual(1, CountAnswers({ 'Level' : 'Study', 'Query' : { 'ProtocolName' : '' # Universal matching }, 'Normalize' : normalize, })) ## ## "StudyInstanceUID" is present, and has VR "UI" => wildcard is not allowed ## for level in [ 'Study', 'Series' ] : for normalize in [ True, False ]: self.assertEqual(1, CountAnswers({ 'Level' : level, 'Query' : { 'StudyInstanceUID' : '' # Universal matching }, 'Normalize' : normalize, })) self.assertEqual(0, CountAnswers({ 'Level' : level, 'Query' : { 'StudyInstanceUID' : 'MISMATCHED^VALUE' }, 'Normalize' : normalize, })) self.assertEqual(1, CountAnswers({ 'Level' : level, 'Query' : { 'StudyInstanceUID' : '4.5.6' # This is the actual value }, 'Normalize' : normalize, })) # Wildcard matching is not allowed for this VR # This test fails on Orthanc <= 1.5.8 self.assertRaises(Exception, lambda: CountAnswers({ 'Level' : level, 'Query' : { 'StudyInstanceUID' : '*' }, 'Normalize' : normalize, })) def test_rendered(self): # New in Orthanc 1.6.0 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] im = GetImage(_REMOTE, '/instances/%s/rendered' % i) self.assertEqual("RGB", im.mode) self.assertEqual(41, im.size[0]) self.assertEqual(41, im.size[1]) # http://effbot.org/zone/pil-comparing-images.htm truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) im = GetImage(_REMOTE, '/instances/%s/rendered?width=10' % i) self.assertEqual("RGB", im.mode) self.assertEqual(10, im.size[0]) self.assertEqual(10, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/rendered?height=10' % i) self.assertEqual("RGB", im.mode) self.assertEqual(10, im.size[0]) self.assertEqual(10, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/rendered?height=128' % i) self.assertEqual("RGB", im.mode) self.assertEqual(128, im.size[0]) self.assertEqual(128, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=0' % i) self.assertEqual("RGB", im.mode) self.assertEqual(10, im.size[0]) self.assertEqual(10, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=1' % i) self.assertEqual("RGB", im.mode) self.assertEqual(10, im.size[0]) self.assertEqual(10, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/rendered?height=5&width=10' % i) self.assertEqual("RGB", im.mode) self.assertEqual(5, im.size[0]) self.assertEqual(5, im.size[1]) # Grayscale image i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] im = GetImage(_REMOTE, '/instances/%s/rendered' % i) self.assertEqual("L", im.mode) self.assertEqual(288, im.size[0]) self.assertEqual(288, im.size[1]) self.assertEqual(0, im.getpixel((0, 0))) # Those are the original windowing parameters that are written # inside the DICOM file im2 = GetImage(_REMOTE, '/instances/%s/rendered?window-center=248.009544468547&window-width=431.351843817788' % i) self.assertEqual("L", im2.mode) self.assertEqual(288, im2.size[0]) self.assertEqual(288, im2.size[1]) self.assertTrue(ImageChops.difference(im, im2).getbbox() is None) im = GetImage(_REMOTE, '/instances/%s/rendered?width=512&smooth=0' % i) self.assertEqual("L", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(512, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=0' % i) self.assertEqual("L", im.mode) self.assertEqual(10, im.size[0]) self.assertEqual(10, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=1' % i) self.assertEqual("L", im.mode) self.assertEqual(10, im.size[0]) self.assertEqual(10, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=-1000' % i) self.assertEqual("L", im.mode) self.assertEqual(1, im.size[0]) self.assertEqual(1, im.size[1]) self.assertEqual(255, im.getpixel((0, 0))) im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=1000' % i) self.assertEqual("L", im.mode) self.assertEqual(1, im.size[0]) self.assertEqual(1, im.size[1]) self.assertEqual(0, im.getpixel((0, 0))) # Test monochrome 1 i = UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm')['ID'] im = GetImage(_REMOTE, '/instances/%s/rendered' % i) self.assertEqual("L", im.mode) self.assertEqual(2010, im.size[0]) self.assertEqual(2446, im.size[1]) self.assertEqual(0, im.getpixel((0, 0))) im = GetImage(_REMOTE, '/instances/%s/rendered?width=20' % i) self.assertEqual("L", im.mode) self.assertEqual(20, im.size[0]) self.assertEqual(24, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/rendered?height=24' % i) self.assertEqual("L", im.mode) self.assertEqual(20, im.size[0]) self.assertEqual(24, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&height=24' % i) self.assertEqual("L", im.mode) self.assertEqual(10, im.size[0]) self.assertEqual(12, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/rendered?width=40&height=24' % i) self.assertEqual("L", im.mode) self.assertEqual(20, im.size[0]) self.assertEqual(24, im.size[1]) def test_bitbucket_issue_154(self): # "Matching against list of UID-s by C-MOVE" # https://bugs.orthanc-server.com/show_bug.cgi?id=154 a = UploadInstance(_REMOTE, 'Issue154-d1.dcm') ['ID'] b = UploadInstance(_REMOTE, 'Issue154-d2.dcm') ['ID'] study = '1.2.826.0.1.3680043.8.498.35214236271657363033644818354280454731' series1 = '1.2.826.0.1.3680043.8.498.12243321927795467590791662266352305113' series2 = '1.2.826.0.1.3680043.8.498.43769499931624584079690260699536473555' # C-FIND is working on list of UIDs i = CallFindScu([ '-k', 'QueryRetrieveLevel=SERIES', '-k', 'StudyInstanceUID=%s' % study, '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2) ]) series = re.findall('\(0020,000e\).*?\[(.*?)\]', i) self.assertEqual(2, len(series)) self.assertTrue(series1 in series) self.assertTrue(series2 in series) # Individual retrieval is working in Orthanc < 1.6.0 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ '--study', '-k', 'QueryRetrieveLevel=SERIES', '-k', 'StudyInstanceUID=%s' % study, '-k', 'SeriesInstanceUID=%s' % series1, ]))) self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ '--study', '-k', 'QueryRetrieveLevel=SERIES', '-k', 'StudyInstanceUID=%s' % study, '-k', 'SeriesInstanceUID=%s' % series2, ]))) self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) DropOrthanc(_LOCAL) # But list matching is working only in Orthanc >= 1.6.0 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ '--study', '-k', 'QueryRetrieveLevel=SERIES', '-k', 'StudyInstanceUID=%s' % study, '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2), ]))) self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) def test_storage_commitment_api(self): # Storage commitment is available since Orthanc 1.6.0 def WaitTransaction(uid): while True: s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) if s['Status'] != 'Pending': return s else: time.sleep(0.01) instance = UploadInstance(_REMOTE, 'DummyCT.dcm') sopClassUid = '1.2.840.10008.5.1.4.1.1.4' sopInstanceUid = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' # Against self transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { "DicomInstances" : [ [ sopClassUid, sopInstanceUid ] ], }) ['ID'] self.assertTrue(transaction.startswith('2.25.')) result = WaitTransaction(transaction) self.assertEqual('ORTHANC', result['RemoteAET']) self.assertEqual('Success', result['Status']) self.assertEqual(1, len(result['Success'])) self.assertEqual(0, len(result['Failures'])) self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { "DicomInstances" : [ { 'SOPClassUID' : sopClassUid, 'SOPInstanceUID' : sopInstanceUid }, ], }) self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) self.assertEqual(result, WaitTransaction(transaction)) tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { "Resources" : [ instance['ID'], instance['ParentSeries'], instance['ParentStudy'], instance['ParentPatient'], ] }) self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) self.assertEqual(result, WaitTransaction(transaction)) transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { "DicomInstances" : [ [ 'nope', 'nope2' ], [ sopClassUid, sopInstanceUid ], ], }) ['ID'] self.assertTrue(transaction.startswith('2.25.')) result = WaitTransaction(transaction) self.assertEqual('ORTHANC', result['RemoteAET']) self.assertEqual('Failure', result['Status']) self.assertEqual(1, len(result['Success'])) self.assertEqual(1, len(result['Failures'])) self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) self.assertEqual('nope', result['Failures'][0]['SOPClassUID']) self.assertEqual('nope2', result['Failures'][0]['SOPInstanceUID']) self.assertEqual(274, result['Failures'][0]['FailureReason']) # Cannot remove items from a failed storage commitment transaction self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction)) # Against Orthanc 0.8.6, that does not support storage commitment if not IsOrthancVersionAbove(_LOCAL, 1, 11, 2): # don't know which specific version the behaviour changed but this fails with 0.8.6 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/orthanctest/storage-commitment', { "DicomInstances" : [ [ sopClassUid, sopInstanceUid ], ] })) def test_storage_commitment_store(self): # Storage commitment is available since Orthanc 1.6.0 def WaitTransaction(uid): while True: s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) if s['Status'] != 'Pending': return s else: time.sleep(0.01) i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) # The Orthanc 0.8.6 from "_LOCAL" does not support storage commitment if not IsOrthancVersionAbove(_LOCAL, 1, 11, 2): # don't know which specific version the behaviour changed but this fails with 0.8.6 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/orthanctest/store', { 'Resources' : [ i ], 'StorageCommitment' : True, })) j = DoPost(_REMOTE, '/modalities/orthanctest/store', { 'Resources' : [ i ], 'StorageCommitment' : False, }) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) j = DoPost(_REMOTE, '/modalities/self/store', { 'Resources' : [ i ], 'StorageCommitment' : True, }) transaction = j['StorageCommitmentTransactionUID'] self.assertTrue(transaction.startswith('2.25.')) result = WaitTransaction(transaction) self.assertEqual('ORTHANC', result['RemoteAET']) self.assertEqual('Success', result['Status']) self.assertEqual(1, len(result['Success'])) self.assertEqual(0, len(result['Failures'])) self.assertEqual('1.2.840.10008.5.1.4.1.1.4', result['Success'][0]['SOPClassUID']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', result['Success'][0]['SOPInstanceUID']) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction) self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) def test_store_straight(self): # New in Orthanc 1.6.1 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: dicom = f.read() self.assertRaises(Exception, lambda: DoPost( _REMOTE, '/modalities/orthanctest/store-straight', 'nope', 'nope')) answer = DoPost(_REMOTE, '/modalities/orthanctest/store-straight', dicom, 'nope') self.assertEqual('1.2.840.10008.5.1.4.1.1.4', answer['SOPClassUID']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', answer['SOPInstanceUID']) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) def test_storescu_transcoding(self): # New in Orthanc 1.7.0 # Add a RLE-encoded DICOM file i = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.5.dcm')['ID'] self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) rleSize = len(DoGet(_REMOTE, '/instances/%s/file' % i)) # Export the instance, with transcoding: "_REMOTE" is the # Orthanc server being tested try: DoDelete(_REMOTE, '/modalities/toto') except: pass params = DoGet(_REMOTE, '/modalities?expand') ['orthanctest'] DoPut(_REMOTE, '/modalities/toto', params) DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain') j = DoGet(_LOCAL, '/instances') self.assertEqual(1, len(j)) uncompressedSize = len(DoGet(_LOCAL, '/instances/%s/file' % j[0])) self.assertTrue(uncompressedSize > rleSize / 2) # Export, with transcoding disabled => this fails with 0.8.6 but not with more recent versions params['AllowTranscoding'] = False DoPut(_REMOTE, '/modalities/toto', params) if not IsOrthancVersionAbove(_LOCAL, 1, 11, 2): # don't know which specific version the behaviour changed but this fails with 0.8.6 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain')) else: DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain') DoDelete(_REMOTE, '/modalities/toto') def test_bitbucket_issue_169(self): with open(GetDatabasePath('Issue169.dcm.bz2'), 'rb') as f: dicom = bz2.decompress(f.read()) self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(dicom)) self.assertEqual(44350560, len(dicom)) i = DoPost(_REMOTE, '/instances', dicom, 'application/dicom') ['ID'] tags = DoGet(_REMOTE, '/instances/%s/tags' % i) self.assertEqual('NORMAL', tags['1337,1001']['Value']) self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') j = DoGet(_LOCAL, '/instances') self.assertEqual(1, len(j)) # In Orthanc <= 1.6.1, transfer syntax changed from "Explicit # VR Little Endian" (1.2.840.10008.1.2.1) to "Implicit VR # Little Endian" (1.2.840.10008.1.2) self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( DoGet(_LOCAL, '/instances/%s/file' % j[0]))) # In Orthanc <= 1.6.1, the value of the private tags was lost # because of this transcoding tags = DoGet(_LOCAL, '/instances/%s/tags' % j[0]) self.assertEqual('NORMAL', tags['1337,1001']['Value']) def test_modify_transcode_instance(self): i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( DoGet(_REMOTE, '/instances/%s/file' % i))) a = ExtractDicomTags(DoGet(_REMOTE, '/instances/%s/file' % i), [ 'SOPInstanceUID' ]) [0] self.assertTrue(len(a) > 20) SYNTAXES = [ '1.2.840.10008.1.2', '1.2.840.10008.1.2.1', #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) '1.2.840.10008.1.2.2', '1.2.840.10008.1.2.4.50', '1.2.840.10008.1.2.4.51', '1.2.840.10008.1.2.4.57', '1.2.840.10008.1.2.4.70', ] if HasGdcmPlugin(_REMOTE): SYNTAXES = SYNTAXES + [ '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM ] for syntax in SYNTAXES: transcoded = DoPost(_REMOTE, '/instances/%s/modify' % i, { 'Transcode' : syntax, 'Keep' : [ 'SOPInstanceUID' ], 'Force' : True, }) self.assertEqual(syntax, GetTransferSyntax(transcoded)) b = ExtractDicomTags(transcoded, [ 'SOPInstanceUID' ]) [0] self.assertTrue(len(b) > 20) if syntax in [ '1.2.840.10008.1.2.4.50', '1.2.840.10008.1.2.4.51', '1.2.840.10008.1.2.4.81', '1.2.840.10008.1.2.4.91' ]: # Lossy transcoding: The SOP instance UID must have changed self.assertNotEqual(a, b) else: self.assertEqual(a, b) def test_archive_transcode(self): info = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') # GET on "/media" z = GetArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient']) self.assertEqual(2, len(z.namelist())) self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read('IMAGES/IM0'))) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/media?transcode=nope' % info['ParentPatient'])) z = GetArchive(_REMOTE, '/patients/%s/media?transcode=1.2.840.10008.1.2.4.50' % info['ParentPatient']) self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) z = GetArchive(_REMOTE, '/studies/%s/media?transcode=1.2.840.10008.1.2.4.51' % info['ParentStudy']) self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) z = GetArchive(_REMOTE, '/series/%s/media?transcode=1.2.840.10008.1.2.4.57' % info['ParentSeries']) self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) # POST on "/media" self.assertRaises(Exception, lambda: PostArchive( _REMOTE, '/patients/%s/media' % info['ParentPatient'], { 'Transcode' : 'nope' })) z = PostArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient'], { 'Transcode' : '1.2.840.10008.1.2.4.50', }) self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) z = PostArchive(_REMOTE, '/studies/%s/media' % info['ParentStudy'], { 'Transcode' : '1.2.840.10008.1.2.4.51', }) self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) z = PostArchive(_REMOTE, '/series/%s/media' % info['ParentSeries'], { 'Transcode' : '1.2.840.10008.1.2.4.57', }) self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) # GET on "/archive" z = GetArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient']) self.assertEqual(1, len(z.namelist())) self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read(z.namelist()[0]))) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/archive?transcode=nope' % info['ParentPatient'])) z = GetArchive(_REMOTE, '/patients/%s/archive?transcode=1.2.840.10008.1.2' % info['ParentPatient']) self.assertEqual('1.2.840.10008.1.2', GetTransferSyntax(z.read(z.namelist()[0]))) z = GetArchive(_REMOTE, '/studies/%s/archive?transcode=1.2.840.10008.1.2.2' % info['ParentStudy']) self.assertEqual('1.2.840.10008.1.2.2', GetTransferSyntax(z.read(z.namelist()[0]))) z = GetArchive(_REMOTE, '/series/%s/archive?transcode=1.2.840.10008.1.2.4.70' % info['ParentSeries']) self.assertEqual('1.2.840.10008.1.2.4.70', GetTransferSyntax(z.read(z.namelist()[0]))) # POST on "/archive" self.assertRaises(Exception, lambda: PostArchive( _REMOTE, '/patients/%s/archive' % info['ParentPatient'], { 'Transcode' : 'nope' })) z = PostArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient'], { 'Transcode' : '1.2.840.10008.1.2.4.50', }) self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) z = PostArchive(_REMOTE, '/studies/%s/archive' % info['ParentStudy'], { 'Transcode' : '1.2.840.10008.1.2.4.51', }) self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read(z.namelist()[0]))) z = PostArchive(_REMOTE, '/series/%s/archive' % info['ParentSeries'], { 'Transcode' : '1.2.840.10008.1.2.4.57', }) self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read(z.namelist()[0]))) # "/tools/create-*" z = PostArchive(_REMOTE, '/tools/create-archive', { 'Resources' : [ info['ParentStudy'] ], 'Transcode' : '1.2.840.10008.1.2.4.50', }) self.assertEqual(1, len(z.namelist())) self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) z = PostArchive(_REMOTE, '/tools/create-media', { 'Resources' : [ info['ParentStudy'] ], 'Transcode' : '1.2.840.10008.1.2.4.51', }) self.assertEqual(2, len(z.namelist())) self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) z = PostArchive(_REMOTE, '/tools/create-media-extended', { 'Resources' : [ info['ParentStudy'] ], 'Transcode' : '1.2.840.10008.1.2.4.57', }) self.assertEqual(2, len(z.namelist())) self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) if IsOrthancVersionAbove(_REMOTE, 1, 12, 2): z = GetArchive(_REMOTE, '/tools/create-archive?resources=%s&transcode=1.2.840.10008.1.2.4.50' % info['ParentStudy']) self.assertEqual(1, len(z.namelist())) self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) z = GetArchive(_REMOTE, '/tools/create-media?resources=%s&transcode=1.2.840.10008.1.2.4.51' % info['ParentStudy']) self.assertEqual(2, len(z.namelist())) self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) z = GetArchive(_REMOTE, '/tools/create-media-extended?resources=%s&transcode=1.2.840.10008.1.2.4.57' % info['ParentStudy']) self.assertEqual(2, len(z.namelist())) self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) def test_download_file_transcode(self): if IsOrthancVersionAbove(_REMOTE, 1, 12, 2): info = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.1.dcm') self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( DoGet(_REMOTE, '/instances/%s/file' % info['ID']))) self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax( DoGet(_REMOTE, '/instances/%s/file?transcode=1.2.840.10008.1.2.4.50' % info['ID']))) def test_modify_keep_source(self): # https://groups.google.com/d/msg/orthanc-users/CgU-Wg8vDio/BY5ZWcDEAgAJ i = UploadInstance(_REMOTE, 'DummyCT.dcm') self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { 'Replace' : { 'StationName' : 'TEST', }, 'KeepSource' : True, }) s = DoGet(_REMOTE, '/studies') self.assertEqual(2, len(s)) self.assertTrue(i['ParentStudy'] in s) self.assertTrue(j['ID'] in s) DoDelete(_REMOTE, '/studies/%s' % j['ID']) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { 'Replace' : { 'StationName' : 'TEST', }, 'KeepSource' : False, }) s = DoGet(_REMOTE, '/studies') self.assertEqual(1, len(s)) self.assertFalse(i['ParentStudy'] in s) self.assertTrue(j['ID'] in s) def test_modify_transcode_study(self): i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( DoGet(_REMOTE, '/instances/%s/file' % i['ID']))) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { 'Transcode' : '1.2.840.10008.1.2.4.50', 'KeepSource' : False }) k = DoGet(_REMOTE, '/instances') self.assertEqual(1, len(k)) self.assertEqual(i['ID'], DoGet(_REMOTE, '/instances/%s/metadata?expand' % k[0]) ['ModifiedFrom']) self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax( DoGet(_REMOTE, '/instances/%s/file' % k[0]))) def test_modify_need_force_to_change_uids(self): def Modify(level, resourceId, replaceTags, force, keepSource): return DoPost(_REMOTE, '/%s/%s/modify' % (level, resourceId), { 'Replace' : replaceTags, 'Force': force, 'KeepSource' : keepSource }) self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) i = UploadInstance(_REMOTE, 'DummyCT.dcm') self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) # can not change the StudyInstanceUID unless you force it self.assertRaises(Exception, lambda: Modify('studies', i['ParentStudy'], {'StudyInstanceUID': '1.2'}, force=False, keepSource=True)) Modify('studies', i['ParentStudy'], {'StudyInstanceUID': '1.2'}, force=True, keepSource=True) # can not change the SeriesInstanceUID unless you force it self.assertRaises(Exception, lambda: Modify('series', i['ParentSeries'], {'SeriesInstanceUID': '1.2'}, force=False, keepSource=True)) Modify('series', i['ParentSeries'], {'SeriesInstanceUID': '1.2'}, force=True, keepSource=True) # can not change the SOPInstanceUID unless you force it self.assertRaises(Exception, lambda: Modify('instances', i['ID'], {'SOPInstanceUID': '1.2'}, force=False, keepSource=True)) Modify('instances', i['ID'], {'SOPInstanceUID': '1.2'}, force=True, keepSource=True) # can not change the PatientID of a study unless you force it self.assertRaises(Exception, lambda: Modify('studies', i['ParentStudy'], {'PatientID': 'NEW'}, force=False, keepSource=True)) self.assertRaises(Exception, lambda: Modify('series', i['ParentSeries'], {'StudyInstanceUID': '1.3'}, force=False, keepSource=True)) self.assertRaises(Exception, lambda: Modify('instances', i['ID'], {'SeriesInstanceUID': '1.2'}, force=False, keepSource=True)) if IsOrthancVersionAbove(_REMOTE, 1, 11, 3): # this was forbidden even with Force=true till 1.11.2 included Modify('studies', i['ParentStudy'], {'PatientID': 'NEW'}, force=True, keepSource=True) Modify('series', i['ParentSeries'], {'StudyInstanceUID': '1.3'}, force=True, keepSource=True) Modify('instances', i['ID'], {'SeriesInstanceUID': '1.2'}, force=True, keepSource=True) def test_modify_study_module_reconstruction(self): if IsOrthancVersionAbove(_REMOTE, 1, 11, 3): def UploadAndModify(level, resourceId, replaceTags, force, keepSource, dropOrthanc=True): if dropOrthanc: DropOrthanc(_REMOTE) UploadFolder(_REMOTE, 'Knee/T1') UploadFolder(_REMOTE, 'Knee/T2') if dropOrthanc: self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) modifyResponse = DoPost(_REMOTE, '/%s/%s/modify' % (level, resourceId), { 'Replace' : replaceTags, 'Force': force, 'KeepSource' : keepSource }) modifiedResource = DoGet(_REMOTE, '/%s/%s' % (level, modifyResponse['ID'])) return (modifyResponse, modifiedResource) kneeSeriesT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' kneeSeriesT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' kneeStudyInstanceUID = '2.16.840.1.113669.632.20.121711.10000160881' kneeSeriesInstanceUIDT1 = '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' kneeSeriesInstanceUIDT2 = '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' ####### study level tests ####### # modify study description and make sure the MainDicomTags are updated modifyResponse, modifiedResource = UploadAndModify('studies', kneeStudy, replaceTags={ 'StudyInstanceUID': kneeStudyInstanceUID, 'StudyDescription': 'TOTO' }, force=True, keepSource=True) self.assertEqual(kneeStudy, modifyResponse['ID']) self.assertEqual('TOTO', modifiedResource['MainDicomTags']['StudyDescription']) # modify patient name at study level and make sure the PatientMainDicomTags are updated + the patient has been updated modifyResponse, modifiedResource = UploadAndModify('studies', kneeStudy, replaceTags={ 'StudyInstanceUID': kneeStudyInstanceUID, 'PatientName': 'TOTO' }, force=True, keepSource=True) self.assertEqual(kneeStudy, modifyResponse['ID']) self.assertEqual('TOTO', modifiedResource['PatientMainDicomTags']['PatientName']) patient = DoGet(_REMOTE, '/patients/%s' % kneePatient) self.assertEqual('TOTO', patient['MainDicomTags']['PatientName']) # modify patient name and patient id at study level and make sure the PatientMainDicomTags are updated + a new patient has been created + the old one does not exist anymore modifyResponse, modifiedResource = UploadAndModify('studies', kneeStudy, replaceTags={ 'StudyInstanceUID': kneeStudyInstanceUID, 'PatientID': 'TOTO_ID', 'PatientName': 'TOTO' }, force=True, keepSource=True) self.assertNotEqual(kneeStudy, modifyResponse['ID']) # the study has changed since the PatientID has changed self.assertEqual('TOTO', modifiedResource['PatientMainDicomTags']['PatientName']) self.assertEqual('TOTO_ID', modifiedResource['PatientMainDicomTags']['PatientID']) patient = DoGet(_REMOTE, '/patients/%s' % modifyResponse['PatientID']) self.assertEqual('TOTO', patient['MainDicomTags']['PatientName']) self.assertEqual('TOTO_ID', patient['MainDicomTags']['PatientID']) ####### series level tests ####### # modify series description and make sure the MainDicomTags are updated modifyResponse, modifiedResource = UploadAndModify('series', kneeStudy, replaceTags={ 'SeriesInstanceUID': kneeSeriesInstanceUIDT1, 'StudyInstanceUID': kneeStudyInstanceUID, 'SeriesDescription': 'TOTO' }, force=True, keepSource=True) self.assertEqual(kneeSeriesT1, modifyResponse['ID']) self.assertEqual('TOTO', modifiedResource['MainDicomTags']['SeriesDescription']) self.assertEqual(kneeStudy, modifyResponse['ParentResources'][0]) def test_rename_patient_with_multiple_studies(self): if IsOrthancVersionAbove(_REMOTE, 1, 11, 3): patientOrthancId = '5436938e-7ae68340-5ea6ad3c-4e6e09bd-1bd335de' patientDicomId = 'TEST_1' patientName = 'Test' study1234 = '72de3b86-da4b2556-bb33f32f-d1d84f80-fb017059' study2345 = '3594f32b-dcf60e81-58252b67-66222714-c09fca81' DropOrthanc(_REMOTE) UploadFolder(_REMOTE, 'PatientWith2studies') # each sub-test is in a dedicated 'if' for clarity if True: # it shall be impossible to rename a patient when modifying a study if that patient already has other studies self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/%s/%s/modify' % ('studies', study1234), { 'Replace' : {'PatientName': "TOTO"}, 'Force': True, 'KeepSource' : True })) if True: # rename the patient (at patient level) modifyResponse = DoPost(_REMOTE, '/%s/%s/modify' % ('patients', patientOrthancId), { 'Replace' : { 'PatientName': 'TOTO' }, 'Force': True, 'KeepSource' : False }) modifiedPatient = DoGet(_REMOTE, '/%s/%s' % ('patients', modifyResponse['ID'])) # make sure the patient name has been edited at patient level self.assertEqual('TOTO', modifiedPatient['MainDicomTags']['PatientName']) # there should only be 2 studies since we have set KeepSource=False self.assertEqual(2, len(modifiedPatient['Studies'])) modifiedStudy1 = DoGet(_REMOTE, '/%s/%s' % ('studies', modifiedPatient['Studies'][0])) modifiedStudy2 = DoGet(_REMOTE, '/%s/%s' % ('studies', modifiedPatient['Studies'][1])) self.assertEqual('TOTO', modifiedStudy1['PatientMainDicomTags']['PatientName']) self.assertEqual('TOTO', modifiedStudy2['PatientMainDicomTags']['PatientName']) if True: # rename the patient (at patient level) and don't keep sources and preserve StudyInstanceUID DropOrthanc(_REMOTE) UploadFolder(_REMOTE, 'PatientWith2studies') # rename the patient (at patient level) and don't keep sources and preserve StudyInstanceUID, SeriesInstanceUID modifyResponse = DoPost(_REMOTE, '/%s/%s/modify' % ('patients', patientOrthancId), { 'Replace' : { 'PatientName': 'TOTO' }, 'Keep': ['StudyInstanceUID', 'SeriesInstanceUID'], 'Force': True, 'KeepSource' : False }) modifiedPatient = DoGet(_REMOTE, '/%s/%s' % ('patients', modifyResponse['ID'])) # make sure tha patient name has been edited at patient level self.assertEqual('TOTO', modifiedPatient['MainDicomTags']['PatientName']) # there should only be 2 studies since we have set KeepSource=False self.assertEqual(2, len(modifiedPatient['Studies'])) modifiedStudy1 = DoGet(_REMOTE, '/%s/%s' % ('studies', modifiedPatient['Studies'][0])) modifiedStudy2 = DoGet(_REMOTE, '/%s/%s' % ('studies', modifiedPatient['Studies'][1])) # the StudyInstanceUID shall not have changed self.assertIn(modifiedStudy1['MainDicomTags']['StudyInstanceUID'], ['1.2.3', '2.3.4']) self.assertIn(modifiedStudy2['MainDicomTags']['StudyInstanceUID'], ['1.2.3', '2.3.4']) # the DB model of parent shall have been reconstructed self.assertEqual('TOTO', modifiedStudy1['PatientMainDicomTags']['PatientName']) self.assertEqual('TOTO', modifiedStudy2['PatientMainDicomTags']['PatientName']) if True: # it shall not be possible to keep all dicom UID and have KeepSource at False since the modified instances # would have the same orthanc ids as the source ids -> they would be deleted self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/%s/%s/modify' % ('patients', study1234), { 'Replace' : {'PatientName': "TOTO"}, 'Force': True, 'Keep': ['StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID'], 'KeepSource' : False })) if True: # rename the patient (at patient level) and don't keep sources and preserve all DicomID DropOrthanc(_REMOTE) UploadFolder(_REMOTE, 'PatientWith2studies') # rename the patient (at patient level) and don't keep sources and preserve StudyInstanceUID modifyResponse = DoPost(_REMOTE, '/%s/%s/modify' % ('patients', patientOrthancId), { 'Replace' : { 'PatientName': 'TOTO' }, 'Keep': ['StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID'], 'Force': True, 'KeepSource' : True }) modifiedPatient = DoGet(_REMOTE, '/%s/%s' % ('patients', modifyResponse['ID'])) # make sure tha patient name has been edited at patient level self.assertEqual('TOTO', modifiedPatient['MainDicomTags']['PatientName']) # there should only be 2 studies since we have set KeepSource=False self.assertEqual(2, len(modifiedPatient['Studies'])) modifiedStudy1 = DoGet(_REMOTE, '/%s/%s' % ('studies', modifiedPatient['Studies'][0])) modifiedStudy2 = DoGet(_REMOTE, '/%s/%s' % ('studies', modifiedPatient['Studies'][1])) # the StudyInstanceUID shall not have changed self.assertIn(modifiedStudy1['MainDicomTags']['StudyInstanceUID'], ['1.2.3', '2.3.4']) self.assertIn(modifiedStudy2['MainDicomTags']['StudyInstanceUID'], ['1.2.3', '2.3.4']) # the DB model of parent shall have been reconstructed self.assertEqual('TOTO', modifiedStudy1['PatientMainDicomTags']['PatientName']) self.assertEqual('TOTO', modifiedStudy2['PatientMainDicomTags']['PatientName']) if True: # try to attach the knee study to an existing patient DropOrthanc(_REMOTE) UploadFolder(_REMOTE, 'PatientWith2studies') UploadFolder(_REMOTE, 'Knee/T1') kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' # try to change the PatientID at study level. This only works if we specify all Patient Tags and if they are identical to the existing Patient in DB # this should fail if only specifying the PatientID self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/%s/%s/modify' % ('studies', kneeStudy), { 'Replace' : { 'PatientID': 'TEST_1' }, 'Force': True, 'KeepSource' : False })) # this should fail if specifying all tags but one of them is not correct self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/%s/%s/modify' % ('studies', kneeStudy), { 'Replace' : { 'PatientID': 'TEST_1', 'PatientName': 'Test', 'PatientBirthDate': '19000101', 'PatientSex': 'F' # this is wrong ! }, 'Force': True, 'KeepSource' : False })) # this should fail if specifying a tag that is not defined in DB for that patient self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/%s/%s/modify' % ('studies', kneeStudy), { 'Replace' : { 'PatientID': 'TEST_1', 'PatientName': 'Test', 'PatientBirthDate': '19000101', 'PatientSex': 'M', '0010,1000': 'TUTU' # this does not exist in DB }, 'Force': True, 'KeepSource' : False })) # this should now work with all correct tags modifyResponse = DoPost(_REMOTE, '/%s/%s/modify' % ('studies', kneeStudy), { 'Replace' : { 'PatientID': 'TEST_1', 'PatientName': 'Test', 'PatientBirthDate': '19000101', 'PatientSex': 'M' }, 'Force': True, 'KeepSource' : False }) modifiedStudy = DoGet(_REMOTE, '/%s/%s' % ('studies', modifyResponse['ID'])) self.assertEqual('Test', modifiedStudy['PatientMainDicomTags']['PatientName']) patient = DoGet(_REMOTE, '/%s/%s' % ('patients', patientOrthancId)) # make sure tha patient name remains the same at patient level self.assertEqual('Test', patient['MainDicomTags']['PatientName']) if True: # try to edit patient in Knee (only study from this patient) DropOrthanc(_REMOTE) UploadFolder(_REMOTE, 'PatientWith2studies') UploadFolder(_REMOTE, 'Knee/T1') kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' originalKneePatientId = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' originalKneePatient = DoGet(_REMOTE, '/%s/%s' % ('patients', originalKneePatientId)) # try to change the PatientName and StudyDescription at study level. modifyResponse = DoPost(_REMOTE, '/%s/%s/modify' % ('studies', kneeStudy), { 'Replace' : { 'PatientName': 'Test Knee', 'StudyDescription': 'Knee study' }, 'Keep': ['StudyInstanceUID'], 'Force': True, 'KeepSource' : False }) modifiedStudy = DoGet(_REMOTE, '/%s/%s' % ('studies', modifyResponse['ID'])) self.assertEqual('Test Knee', modifiedStudy['PatientMainDicomTags']['PatientName']) # reload the patient, it shall have been updated as well (and kept the same ID since we did not change the PatientID) modifiedPatient = DoGet(_REMOTE, '/%s/%s' % ('patients', originalKneePatientId)) self.assertEqual('Test Knee', modifiedPatient['MainDicomTags']['PatientName']) # try to change the PatientID and PatientName and StudyDescription at study level. Since we use a new PatientID, we can modify its name too modifyResponse = DoPost(_REMOTE, '/%s/%s/modify' % ('studies', kneeStudy), { 'Replace' : { 'PatientName': 'Test Knee 2', 'PatientID': 'TEST_KNEE_2', 'StudyDescription': 'Knee study 2' }, 'Force': True, 'KeepSource' : False }) modifiedStudy = DoGet(_REMOTE, '/%s/%s' % ('studies', modifyResponse['ID'])) self.assertEqual('Test Knee 2', modifiedStudy['PatientMainDicomTags']['PatientName']) self.assertEqual('Knee study 2', modifiedStudy['MainDicomTags']['StudyDescription']) # reload the patient, now, its orthanc id has changed modifiedPatient = DoGet(_REMOTE, '/%s/%s' % ('patients', modifiedStudy['ParentPatient'])) self.assertEqual('Test Knee 2', modifiedPatient['MainDicomTags']['PatientName']) # the previous patient shall not exist anymore self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/%s/%s' % ('patients', originalKneePatientId))) def test_store_peer_transcoding(self): i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] SYNTAXES = [ '1.2.840.10008.1.2', '1.2.840.10008.1.2.1', #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) '1.2.840.10008.1.2.2', '1.2.840.10008.1.2.4.50', '1.2.840.10008.1.2.4.51', '1.2.840.10008.1.2.4.57', '1.2.840.10008.1.2.4.70', ] if HasGdcmPlugin(_REMOTE): SYNTAXES = SYNTAXES + [ '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM ] for syntax in SYNTAXES: body = { 'Resources' : [ i ], } if syntax != '1.2.840.10008.1.2.1': body['Transcode'] = syntax self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) DoPost(_REMOTE, '/peers/peer/store', body, 'text/plain') self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) self.assertEqual(syntax, GetTransferSyntax( DoGet(_LOCAL, '/instances/%s/file' % DoGet(_LOCAL, '/instances') [0]))) DropOrthanc(_LOCAL) def test_getscu(self): def CleanTarget(): if os.path.isdir('/tmp/GETSCU'): shutil.rmtree('/tmp/GETSCU') os.makedirs('/tmp/GETSCU') env = {} if _DOCKER: # This is "getscu" from DCMTK 3.6.5 compiled using LSB, # and running in a GNU/Linux distribution running DCMTK # 3.6.0. Tell "getscu" where it can find the DICOM dictionary. env['DCMDICTPATH'] = os.environ.get('DCMDICTPATH', '/usr/share/libdcmtk2/dicom.dic') # no transcoding required UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] CleanTarget() subprocess.check_call([ FindExecutable('getscu'), _REMOTE['Server'], str(_REMOTE['DicomPort']), '-aec', 'ORTHANC', '-aet', 'ORTHANCTEST', # pretend to be the other orthanc '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775', '-k', '0008,0052=STUDY', '--output-directory', '/tmp/GETSCU/' ], env = env) f1 = '/tmp/GETSCU/MR.1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' self.assertTrue(os.path.isfile(f1)) with open(f1, 'rb') as f: self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read(), encoding='ISO-8859-1')) CleanTarget() # transcoding required UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') subprocess.check_call([ FindExecutable('getscu'), _REMOTE['Server'], str(_REMOTE['DicomPort']), '-aec', 'ORTHANC', '-aet', 'ORTHANCTEST', # pretend to be the other orthanc '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775\\1.2.840.113663.1298.6234813.1.298.20000329.1115122', '-k', '0008,0052=STUDY', '--output-directory', '/tmp/GETSCU/' ], env = env) self.assertTrue(os.path.isfile(f1)) with open(f1, 'rb') as f: self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read(), encoding='ISO-8859-1')) # This file is transcoded from "1.2.840.10008.1.2.4.50" to "1.2.840.10008.1.2.1" # (LittleEndianExplicit is proposed by default by "getscu") f2 = '/tmp/GETSCU/US.1.2.840.113663.1298.1.3.715.20000329.1115326' self.assertTrue(os.path.isfile(f2)) with open(f2, 'rb') as f: self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) def test_findscu_truncation(self): # https://groups.google.com/forum/#!msg/orthanc-users/FkckWAHvso8/UbRBAhQ5CwAJ # Fixed by: https://orthanc.uclouvain.be/hg/orthanc/rev/2724977419fb UploadInstance(_REMOTE, 'Multiframe.dcm') UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') study = '1.3.46.670589.7.5.8.80001255161.20000323.151537.1' i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyInstanceUID' ]) result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) self.assertEqual(2, len(result)) # The "StudyInstanceUID" is set as a list of 5 times the same # study, leading to a string of 249 characters i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s' % (( study, ) * 5) ]) result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) self.assertEqual(1, len(result)) # The "StudyInstanceUID" is set as a list of 6 times the same # study, leading to a string of 299 characters. In Orthanc <= # 1.7.2, this is above the value of ORTHANC_MAXIMUM_TAG_LENGTH # == 256, and is thus wiped out by C-FIND SCP. As a # consequence, Orthanc <= 1.7.2 doesn't apply the filter on # "StudyInstanceUID" and returns all the available # studies (i.e. 2). This issue was fixed in Orthanc 1.7.3. i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s\\%s' % (( study, ) * 6) ]) result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) self.assertEqual(1, len(result)) def test_store_compressed(self): with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: dicom = f.read() i = DoPost(_REMOTE, '/instances', dicom) ['ID'] sourceSize = len(dicom) self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) # Sending to the local Orthanc 0.8.6 server, without compression: OK jobId = MonitorJob2(_REMOTE, lambda: DoPost( _REMOTE, '/peers/peer/store', { 'Resources' : [ i ], 'Synchronous' : False, })) job = DoGet(_REMOTE, '/jobs/%s' % jobId) self.assertFalse(job['Content']['Compress']) self.assertEqual('', job['Content']['Peer'][2]) # Password must not be reported self.assertEqual(str(sourceSize), job['Content']['Size']) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) DropOrthanc(_LOCAL) if not IsOrthancVersionAbove(_LOCAL, 1, 11, 2): # don't know which specific version the behaviour changed but this fails with 0.8.6 # Sending to the local Orthanc 0.8.6 server, with compression: # Not supported by Orthanc 0.8.6 => failure self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/peers/peer/store', { 'Resources' : [ i ], 'Compress' : True, })) self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) # Sending to the tested remote server, with compression: OK jobId = MonitorJob2(_REMOTE, lambda: DoPost( _REMOTE, '/peers/self/store', { 'Resources' : [ i ], 'Compress' : True, 'Synchronous' : False, })) job = DoGet(_REMOTE, '/jobs/%s' % jobId) self.assertTrue(job['Content']['Compress']) # Compression must have divided the size of the sent data at least twice self.assertLess(int(job['Content']['Size']), sourceSize / 2) def test_move_ambra(self): # "Orthanc + Ambra: Query/Retrieve" (2020-08-25) # https://groups.google.com/g/orthanc-users/c/yIUnZ9v9-Zs/m/GQPXiAOiCQAJ UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ '--study', '-k', 'StudyInstanceUID=' ]))) self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ '--study', '-k', 'AccessionNumber=', ]))) self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ '--study', '-k', 'AccessionNumber=', '-k', 'StudyInstanceUID=' ]))) self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ '--study', '-k', 'AccessionNumber=CT16000988', '-k', 'StudyInstanceUID=', ]))) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) DropOrthanc(_LOCAL) self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ '--study', '-k', 'AccessionNumber=CT16000988', '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39', ]))) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) DropOrthanc(_LOCAL) # This fails on Orthanc <= 1.7.3 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ '--study', '-k', 'AccessionNumber=', '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39' ]))) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) DropOrthanc(_LOCAL) def test_decode_elscint(self): # https://groups.google.com/g/orthanc-users/c/d9anAx6lSis/m/qEzm1x3PAAAJ a = UploadInstance(_REMOTE, '2020-09-12-ELSCINT1-PMSCT_RLE1.dcm')['ID'] b = UploadInstance(_REMOTE, '2020-09-11-Christopher-ELSCINT1-Raw.dcm')['ID'] im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % a) self.assertEqual("L", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(512, im.size[1]) im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % b) self.assertEqual("L", im.mode) self.assertEqual(512, im.size[0]) self.assertEqual(512, im.size[1]) # The two tests below fail on Orthanc <= 1.7.3 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % a) self.assertEqual(512 * 512 * 2, len(raw)) raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % b) self.assertEqual(512 * 512 * 2, len(raw)) def test_rest_modalities_in_study_2(self): # Problem reported by Alain Mazy on 2020-09-15 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=' ]) modalitiesInStudy = re.findall('\(0008,0061\).*?\[(.*?)\]', i) self.assertEqual(1, len(modalitiesInStudy)) self.assertEqual('CT\\PT ', modalitiesInStudy[0]) for i in [ '', 'CT', 'PT', 'UX', 'UX\\MR', 'CT\\PT', 'UX\\PT', 'CT\\PT', 'UX\\CT\\PT' ]: # The empty string '' corresponds to universal matching. # The case where "i == 'CT'" failed in Orthanc <= 1.7.3. if i in [ 'UX', 'UX\\MR' ]: expected = 0 else: expected = 1 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { 'ModalitiesInStudy' : i }}) self.assertEqual(expected, len(a)) i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=%s' % i ]) studyInstanceUid = re.findall('\(0020,000d\).*?\[(.*?)\]', i) self.assertEqual(expected, len(studyInstanceUid)) def test_webdav(self): self.assertRaises(Exception, lambda: DoPropFind(_REMOTE, '/webdav/', 2)) for suffix in [ '', '/' ]: f = DoPropFind(_REMOTE, '/webdav' + suffix, 0) self.assertEqual(1, len(f)) self.assertTrue('/webdav/' in f.keys()) self.assertTrue(f['/webdav/']['folder']) self.assertEqual('webdav', f['/webdav/']['displayname']) f = DoPropFind(_REMOTE, '/webdav' + suffix, 1) self.assertEqual(6, len(f)) self.assertTrue(f['/webdav/']['folder']) self.assertEqual('webdav', f['/webdav/']['displayname']) for i in [ 'by-dates', 'by-patients', 'by-studies', 'by-uids', 'uploads' ]: self.assertTrue(f['/webdav/%s' % i]['folder']) self.assertEqual(i, f['/webdav/%s' % i]['displayname']) for depth in [ 0, 1 ]: for suffix2 in [ '', '/' ]: g = DoPropFind(_REMOTE, '/webdav/%s%s' % (i, suffix2), depth) if i == 'uploads': # Empty folders might still exist in "/uploads/" self.assertTrue('/webdav/uploads/' in g) self.assertEqual('uploads', g['/webdav/uploads/']['displayname']) for j in g.items(): self.assertTrue(g.items()[0][1]['folder']) else: self.assertEqual(1, len(g)) self.assertEqual('/webdav/%s/' % i, g.items()[0][0]) self.assertTrue(g.items()[0][1]['folder']) self.assertEqual(i, g.items()[0][1]['displayname']) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: DoPut(_REMOTE, '/webdav/uploads/dummy', f.read(), 'text/plain') while len(DoGet(_REMOTE, '/patients')) == 0: time.sleep(0.01) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) def test_log_categories(self): original = DoGet(_REMOTE, '/tools/log-level-http') DoPut(_REMOTE, '/tools/log-level-http', 'default') self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level-http')) DoGet(_REMOTE, '/system') DoPut(_REMOTE, '/tools/log-level-http', 'verbose') self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level-http')) DoGet(_REMOTE, '/system') DoPut(_REMOTE, '/tools/log-level-http', 'trace') self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level-http')) DoGet(_REMOTE, '/system') self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-http', 'nope')) # Switch back to the original log level DoPut(_REMOTE, '/tools/log-level-http', original) for c in [ 'generic', 'http', 'dicom', 'plugins', 'sqlite', 'lua', 'jobs' ]: DoPut(_REMOTE, '/tools/log-level-%s' % c, DoGet(_REMOTE, '/tools/log-level-%s' % c)) self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-nope', 'default')) def test_upload_zip(self): f = StringIO() with zipfile.ZipFile(f, 'w') as z: z.writestr('hello/world/invalid.txt', 'Hello world') with open(GetDatabasePath('DummyCT.dcm'), 'rb') as g: c = g.read() z.writestr('hello/world/dicom1.dcm', c) z.writestr('hello/world/dicom2.dcm', c) f.seek(0) i = DoPost(_REMOTE, '/instances', f.read()) self.assertEqual(2, len(i)) self.assertEqual(i[0], i[1]) self.assertEqual(6, len(i[0])) self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', i[0]['ID']) self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', i[0]['ParentSeries']) self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', i[0]['ParentStudy']) self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', i[0]['ParentPatient']) self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', i[0]['Path']) # Both are "Success" (instead of one "AlreadyStored"), because "OverwriteInstance" is true self.assertEqual('Success', i[0]['Status']) def test_transfer_syntax_no_metaheader(self): a = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.dcm')['ID'] m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % a) self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) # This fails on Orthanc <= 1.8.1 self.assertTrue('TransferSyntax' in m) self.assertEqual('1.2.840.10008.1.2', m['TransferSyntax']) def test_upload_multipart_1(self): # This tests the "Upload" button in Orthanc Explorer def EncodeChunk(data, boundary, filename): return (('--%s\r\n' + 'Content-Disposition : form-data ; name ="files[]" ; filename = "%s" \r\n' + '\r\n%s\r\n') % (boundary, filename, data)) with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: dcm1 = f.read() with open(GetDatabasePath('ColorTestMalaterre.dcm'), 'rb') as f: dcm2 = f.read() self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) boundary = '----WebKitFormBoundarypJDNQqJPoXiorRmQ' m = DoPost(_REMOTE, '/instances', (EncodeChunk(dcm1, boundary, 'DummyCT.dcm') + EncodeChunk(dcm2, boundary, 'ColorTestMalaterre.dcm') + '--' + boundary + '--'), headers = { 'Content-Type' : 'multipart/form-data ; boundary = %s ' % boundary, 'X-Requested-With' : 'XMLHttpRequest', }) self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) def test_upload_multipart_2(self): # This tests the "maxChunkSize" option of "jQuery File Upload # 5.12", whose source code can be found in: # "OrthancServer/OrthancExplorer/libs/jquery-file-upload/" def EncodeBody(data, boundary, filename): return (('--%s\r\n' + 'Content-Disposition: form-data; name="files[]"; filename="%s"\r\n' + '\r\n%s\r\n--%s') % (boundary, filename, data, boundary)) with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: dcm = f.read() with open(GetDatabasePath('ColorTestMalaterre.dcm'), 'rb') as f: dcm2 = f.read() boundary = '----WebKitFormBoundarypJDNQqJPoXiorRmQ' self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) m = DoPost(_REMOTE, '/instances', EncodeBody(dcm[0:1000], boundary, 'DummyCT.dcm'), headers = { 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, 'X-Requested-With' : 'XMLHttpRequest', 'X-File-Name' : 'DummyCT.dcm', 'X-File-Size' : str(len(dcm)), }) self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) m = DoPost(_REMOTE, '/instances', EncodeBody(dcm[1000:2000], boundary, 'DummyCT.dcm'), headers = { 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, 'X-Requested-With' : 'XMLHttpRequest', 'X-File-Name' : 'DummyCT.dcm', 'X-File-Size' : str(len(dcm)), }) self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) m = DoPost(_REMOTE, '/instances', EncodeBody(dcm2, boundary, 'ColorTestMalaterre.dcm'), headers = { 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, 'X-Requested-With' : 'XMLHttpRequest', 'X-File-Name' : 'ColorTestMalaterre.dcm', 'X-File-Size' : str(len(dcm2)), }) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) # Upload the last chunk => the file is now entirely available m = DoPost(_REMOTE, '/instances', EncodeBody(dcm[2000:len(dcm)], boundary, 'DummyCT.dcm'), headers = { 'Content-Type' : 'multipart/form-data; boundary=%s' % boundary, 'X-Requested-With' : 'XMLHttpRequest', 'X-File-Name' : 'DummyCT.dcm', 'X-File-Size' : str(len(dcm)), }) self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) def test_pixel_data_offset(self): # New in Orthanc 1.9.1 def Check(path, offset): i = UploadInstance(_REMOTE, path) ['ID'] metadata = DoGetRaw(_REMOTE, '/instances/%s/metadata/PixelDataOffset' % i) [1] self.assertEqual(offset, metadata) Check('ColorTestMalaterre.dcm', str(0x03a0)) Check('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', str(0x037c)) Check('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', str(0x03e8)) # Big endian Check('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm', str(0x04ac)) Check('TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm', str(0x072c)) Check('TransferSyntaxes/1.2.840.10008.1.2.4.57.dcm', str(0x0620)) Check('TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm', str(0x065a)) Check('TransferSyntaxes/1.2.840.10008.1.2.4.80.dcm', str(0x0b46)) Check('TransferSyntaxes/1.2.840.10008.1.2.4.81.dcm', str(0x073e)) Check('TransferSyntaxes/1.2.840.10008.1.2.4.90.dcm', str(0x0b66)) Check('TransferSyntaxes/1.2.840.10008.1.2.4.91.dcm', str(0x19b8)) Check('TransferSyntaxes/1.2.840.10008.1.2.5.dcm', str(0x0b0a)) Check('TransferSyntaxes/1.2.840.10008.1.2.dcm', '') # No valid DICOM preamble def test_peer_store_straight(self): self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) peer = DoGet(_REMOTE, '/peers/peer/system') if not IsOrthancVersionAbove(_LOCAL, 0, 8, 6): self.assertEqual(3, len(peer)) self.assertEqual(5, peer['DatabaseVersion']) self.assertEqual('MyOrthanc', peer['Name']) self.assertEqual('0.8.6', peer['Version']) with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: j = DoPost(_REMOTE, '/peers/peer/store-straight', f.read(), 'application/dicom') # Remote server is Orthanc 0.8.6, thus "ParentPatient", # "ParentStudy", "ParentSeries" are not reported if not IsOrthancVersionAbove(_LOCAL, 1, 11, 2): # don't know which specific version the behaviour changed but this fails with 0.8.6 self.assertEqual(3, len(j)) else: self.assertEqual(6, len(j)) self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', j['ID']) self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', j['Path']) self.assertEqual('Success', j['Status']) self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) def test_cp246(self): # This fails on Orthanc <= 1.9.0 a = UploadInstance(_REMOTE, '2021-02-19-MalaterreCP246.dcm')['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) tags = DoGet(_REMOTE, '/instances/%s/tags?short' % a) self.assertEqual('1.2.840.10008.5.1.4.1.1.128', tags['0008,0016']) self.assertEqual('1.3.12.2.1107.5.1.4.36085.2.0.517715415141633', tags['0008,0018']) self.assertEqual('1.2.840.113745.101000.1008000.38179.6792.6324567', tags['0020,000d']) self.assertEqual('1.3.12.2.1107.5.1.4.36085.2.0.517714246252254', tags['0020,000e']) study = DoGet(_REMOTE, '/instances/%s/study' % a) self.assertEqual(tags['0020,000d'], study['MainDicomTags']['StudyInstanceUID']) series = DoGet(_REMOTE, '/instances/%s/series' % a) self.assertEqual(tags['0020,000e'], series['MainDicomTags']['SeriesInstanceUID']) instance = DoGet(_REMOTE, '/instances/%s' % a) self.assertEqual(tags['0008,0018'], instance['MainDicomTags']['SOPInstanceUID']) def test_revisions_metadata(self): # This test fails on Orthanc <= 1.9.1 (support for revisions # was introduced in 1.9.2), or if configuration option # "CheckRevisions" is "False". Conventions for HTTP headers # related to revisions mimic CouchDB: # https://docs.couchdb.org/en/stable/api/document/common.html i = UploadInstance(_REMOTE, 'DummyCT.dcm') ['ID'] (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) self.assertEqual('200', headers['status']) self.assertEqual('"0-%s"' % ComputeMD5('1.2.840.10008.1.2.4.70'), headers['etag']) self.assertEqual('1.2.840.10008.1.2.4.70', body) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i, headers = { 'If-None-Match' : '"aaa"' }) self.assertEqual('400', headers['status']) # Bad header format (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i, headers = { 'If-None-Match' : '"aaa-bbb"' }) self.assertEqual('400', headers['status']) # Bad header format (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i, headers = { 'If-None-Match' : '"0-16de4d7060d0b9d102ef0fca8acc892a"' }) self.assertEqual('304', headers['status']) # Not modified self.assertEqual('"0-16de4d7060d0b9d102ef0fca8acc892a"', headers['etag']) self.assertEqual('', body) # Body must be empty on 304 status (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i, headers = { 'If-None-Match' : '"1-16de4d7060d0b9d102ef0fca8acc892a"' # Bad revision, good MD5 }) self.assertEqual('200', headers['status']) self.assertEqual('"0-16de4d7060d0b9d102ef0fca8acc892a"', headers['etag']) self.assertEqual('1.2.840.10008.1.2.4.70', body) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i, headers = { 'If-None-Match' : '"0-aaa"' # Good revision, bad MD5 }) self.assertEqual('200', headers['status']) self.assertEqual('"0-16de4d7060d0b9d102ef0fca8acc892a"', headers['etag']) self.assertEqual('1.2.840.10008.1.2.4.70', body) (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) self.assertEqual('403', headers['status']) # Forbidden (system metadata) (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i, 'hello') self.assertEqual('403', headers['status']) # Forbidden (system metadata) (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello') self.assertEqual('200', headers['status']) self.assertEqual('"0-%s"' % ComputeMD5('hello'), headers['etag']) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/1024' % i) self.assertEqual('200', headers['status']) self.assertEqual('"0-5d41402abc4b2a76b9719d911017c592"', headers['etag']) self.assertEqual('hello', body) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/1024' % i, headers = { 'If-None-Match' : '"0-5d41402abc4b2a76b9719d911017c592"' }) self.assertEqual('304', headers['status']) self.assertEqual('"0-5d41402abc4b2a76b9719d911017c592"', headers['etag']) self.assertEqual('', body) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/1024' % i, headers = { 'If-None-Match' : '"1-tata"' }) self.assertEqual('200', headers['status']) self.assertEqual('"0-5d41402abc4b2a76b9719d911017c592"', headers['etag']) self.assertEqual('hello', body) self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/metadata/1024' % i)) (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/metadata/1024' % i) self.assertEqual('409', headers['status']) # No revision given, but "CheckRevisions" is True (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/metadata/1024' % i, headers = { 'If-Match' : '45-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('409', headers['status']) # Conflict, as bad revision (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/metadata/1024' % i, headers = { 'If-Match' : '0-tata' }) self.assertEqual('409', headers['status']) # Conflict, as bad MD5 (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/metadata/1024' % i, headers = { 'If-Match' : '0-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('200', headers['status']) (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/metadata/1024' % i, headers = { 'If-Match' : '0-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('404', headers['status']) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/1024' % i) self.assertEqual('404', headers['status']) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/1024' % i)) (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello') self.assertEqual('200', headers['status']) self.assertEqual('"0-5d41402abc4b2a76b9719d911017c592"', headers['etag']) (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello') self.assertEqual('409', headers['status']) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/1024' % i, headers = { 'If-None-Match' : '"0-5d41402abc4b2a76b9719d911017c592"' }) self.assertEqual('304', headers['status']) # Not modified self.assertEqual('"0-5d41402abc4b2a76b9719d911017c592"', headers['etag']) self.assertEqual('', body) # Body must be empty on 304 status (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello', headers = { 'If-Match' : '0-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('200', headers['status']) self.assertEqual('"1-5d41402abc4b2a76b9719d911017c592"', headers['etag']) self.assertEqual('', body) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/metadata/1024' % i, headers = { 'If-None-Match' : headers['etag'] }) if headers['status'] == '200': print("Your database backend doesn't store revisions") (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello2', headers = { 'If-Match' : '1-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('409', headers['status']) (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello2', headers = { 'If-Match' : '0-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('200', headers['status']) self.assertEqual('"1-6e809cbda0732ac4845916a59016f954"', headers['etag']) self.assertEqual('', body) elif headers['status'] == '304': # Revisions are supported (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello2', headers = { 'If-Match' : '0-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('409', headers['status']) (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/metadata/1024' % i, 'hello2', headers = { 'If-Match' : '1-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('200', headers['status']) self.assertEqual('"2-6e809cbda0732ac4845916a59016f954"', headers['etag']) self.assertEqual('', body) else: raise Exception('Internal error') self.assertEqual('hello2', DoGet(_REMOTE, '/instances/%s/metadata/1024' % i)) def test_revisions_attachments(self): # This test fails on Orthanc <= 1.9.1 (support for revisions # was introduced in 1.9.2), or if configuration option # "CheckRevisions" is "False". Conventions for HTTP headers # related to revisions mimic CouchDB: # https://docs.couchdb.org/en/stable/api/document/common.html i = UploadInstance(_REMOTE, 'DummyCT.dcm') ['ID'] with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: md5 = ComputeMD5(f.read()) # "/compress", "/uncompress" and "/verify-md5" are POST # methods, and are not affected by revisions for suffix in [ '', '/compressed-data', '/compressed-md5', '/compressed-size', '/data', '/is-compressed', '/md5', '/size' ]: (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom/%s' % (i, suffix)) self.assertEqual('200', headers['status']) self.assertEqual('"0-%s"' % md5, headers['etag']) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom/%s' % (i, suffix), headers = { 'If-None-Match' : '"0-3e29b869978b6db4886355a2b1132124"', }) self.assertEqual('304', headers['status']) # Not modified self.assertEqual('"0-3e29b869978b6db4886355a2b1132124"', headers['etag']) self.assertEqual('', body) # Body must be empty on 304 status (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom/%s' % (i, suffix), headers = { 'If-None-Match' : '"tata"', # Invalid header }) self.assertEqual('400', headers['status']) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom/%s' % (i, suffix), headers = { 'If-None-Match' : '"1-%s"' % md5, # Bad revision, good MD5 }) self.assertEqual('200', headers['status']) self.assertEqual('"0-3e29b869978b6db4886355a2b1132124"', headers['etag']) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom/%s' % (i, suffix), headers = { 'If-None-Match' : '"0-tata"' # Good revision, bad MD5 }) self.assertEqual('200', headers['status']) self.assertEqual('"0-3e29b869978b6db4886355a2b1132124"', headers['etag']) (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/attachments/dicom' % i) self.assertEqual('403', headers['status']) # Forbidden (system metadata) (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/attachments/dicom' % i, 'hello') self.assertEqual('403', headers['status']) # Forbidden (system metadata) (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/attachments/1024' % i, 'hello') self.assertEqual('200', headers['status']) self.assertEqual('"0-%s"' % ComputeMD5('hello'), headers['etag']) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/attachments/1024/data' % i) self.assertEqual('200', headers['status']) self.assertEqual('"0-5d41402abc4b2a76b9719d911017c592"', headers['etag']) self.assertEqual('hello', body) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/attachments/1024/data' % i, headers = { 'If-None-Match' : '"0-5d41402abc4b2a76b9719d911017c592"' }) self.assertEqual('304', headers['status']) self.assertEqual('"0-5d41402abc4b2a76b9719d911017c592"', headers['etag']) self.assertEqual('', body) for h in [ '"1-5d41402abc4b2a76b9719d911017c592"', # Bad revision, good MD5 '"0-tata"']: # Good revision, bad MD5 (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/attachments/1024/data' % i, headers = { 'If-None-Match' : h }) self.assertEqual('200', headers['status']) self.assertEqual('"0-5d41402abc4b2a76b9719d911017c592"', headers['etag']) self.assertEqual('hello', body) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/attachments/1024/data' % i, headers = { 'If-None-Match' : 'tata' # Bad header format }) self.assertEqual('400', headers['status']) self.assertEqual('"0-5d41402abc4b2a76b9719d911017c592"', headers['etag']) self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/attachments/1024/data' % i)) (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/attachments/1024' % i) self.assertEqual('409', headers['status']) # No revision given, but "CheckRevisions" is True (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/attachments/1024' % i, headers = { 'If-Match' : '45-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('409', headers['status']) # Conflict, as bad revision (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/attachments/1024' % i, headers = { 'If-Match' : '0-tata' }) self.assertEqual('409', headers['status']) # Conflict, as bad MD5 (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/attachments/1024' % i, headers = { 'If-Match' : '0-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('200', headers['status']) (headers, body) = DoDeleteRaw(_REMOTE, '/instances/%s/attachments/1024' % i, headers = { 'If-Match' : '0-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('404', headers['status']) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/attachments/1024/data' % i) self.assertEqual('404', headers['status']) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/1024' % i)) (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/attachments/1024' % i, 'hello') self.assertEqual('200', headers['status']) self.assertEqual('"0-5d41402abc4b2a76b9719d911017c592"', headers['etag']) (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/attachments/1024' % i, 'hello') self.assertEqual('409', headers['status']) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/attachments/1024/data' % i, headers = { 'If-None-Match' : '"0-5d41402abc4b2a76b9719d911017c592"' }) self.assertEqual('304', headers['status']) # Not modified self.assertEqual('"0-5d41402abc4b2a76b9719d911017c592"', headers['etag']) self.assertEqual('', body) # Body must be empty on 304 status (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/attachments/1024' % i, 'hello', headers = { 'If-Match' : '0-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('200', headers['status']) self.assertEqual('"1-5d41402abc4b2a76b9719d911017c592"', headers['etag']) self.assertEqual('{}', body) (headers, body) = DoGetRaw(_REMOTE, '/instances/%s/attachments/1024/data' % i, headers = { 'If-None-Match' : headers['etag'] }) if headers['status'] == '200': print("Your database backend doesn't store revisions") (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/attachments/1024' % i, 'hello2', headers = { 'If-Match' : '1-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('409', headers['status']) (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/attachments/1024' % i, 'hello2', headers = { 'If-Match' : '0-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('200', headers['status']) self.assertEqual('"1-6e809cbda0732ac4845916a59016f954"', headers['etag']) self.assertEqual('{}', body) elif headers['status'] == '304': # Revisions are supported (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/attachments/1024' % i, 'hello2', headers = { 'If-Match' : '0-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('409', headers['status']) (headers, body) = DoPutRaw(_REMOTE, '/instances/%s/attachments/1024' % i, 'hello2', headers = { 'If-Match' : '1-5d41402abc4b2a76b9719d911017c592' }) self.assertEqual('200', headers['status']) self.assertEqual('"2-6e809cbda0732ac4845916a59016f954"', headers['etag']) self.assertEqual('{}', body) else: raise Exception('Internal error') self.assertEqual('hello2', DoGet(_REMOTE, '/instances/%s/attachments/1024/data' % i)) def test_issue_195(self): # This fails on Orthanc <= 1.9.2 # https://bugs.orthanc-server.com/show_bug.cgi?id=195 a = UploadInstance(_REMOTE, 'Issue195.dcm')['ID'] b = DoGet(_REMOTE, '/instances/%s/file' % a, headers = { 'Accept' : 'application/dicom+json' }) # The expected result can be found by typing "dcm2json Database/Issue195.dcm" self.assertEqual(5, len(b)) self.assertEqual(2, len(b["00080018"])) self.assertEqual("UI", b["00080018"]["vr"]) self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.13188.1620309604.848735", b["00080018"]["Value"][0]) self.assertEqual(2, len(b["0020000D"])) self.assertEqual("UI", b["0020000D"]["vr"]) self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.13188.1620309604.848733", b["0020000D"]["Value"][0]) self.assertEqual(2, len(b["0020000E"])) self.assertEqual("UI", b["0020000E"]["vr"]) self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.13188.1620309604.848734", b["0020000E"]["Value"][0]) self.assertEqual(1, len(b["00081030"])) # Case of an empty value self.assertEqual("LO", b["00081030"]["vr"]) self.assertEqual(2, len(b["0008103E"])) self.assertEqual("LO", b["0008103E"]["vr"]) self.assertEqual("Hello1", b["0008103E"]["Value"][0]) a = UploadInstance(_REMOTE, 'Issue195-bis.dcm')['ID'] b = DoGet(_REMOTE, '/instances/%s/file' % a, headers = { 'Accept' : 'application/dicom+json' }) # The expected result can be found by typing "dcm2json Database/Issue195-bis.dcm" self.assertEqual(5, len(b)) self.assertEqual(2, len(b["00080018"])) self.assertEqual("UI", b["00080018"]["vr"]) self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.6792.1625504071.652470", b["00080018"]["Value"][0]) self.assertEqual(2, len(b["0020000D"])) self.assertEqual("UI", b["0020000D"]["vr"]) self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.6792.1625504071.652468", b["0020000D"]["Value"][0]) self.assertEqual(2, len(b["0020000E"])) self.assertEqual("UI", b["0020000E"]["vr"]) self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.6792.1625504071.652469", b["0020000E"]["Value"][0]) self.assertEqual(2, len(b["00084567"])) self.assertEqual("UN", b["00084567"]["vr"]) # NB: "QgA=" corresponds to the base64 encoding of (uint16_t) 0x42 in little endian: # $ echo -n 'QgA=' | base64 -d | hexdump -C self.assertEqual("QgA=", b["00084567"]["InlineBinary"]) # Case of an empty value, fails in Orthanc <= 1.9.2 because of issue #195 self.assertEqual(1, len(b["00084565"])) self.assertEqual("UN", b["00084565"]["vr"]) def test_modify_attribute(self): # This fails on Orthanc <= 1.9.3 (not implemented) # https://groups.google.com/g/orthanc-users/c/1pzCqT-ByXg/m/VyIGK5i5BgAJ i = UploadInstance(_REMOTE, 'DummyCT.dcm') ['ID'] tags = DoGet(_REMOTE, '/instances/%s/tags?short' % i) self.assertFalse('0020,9165' in tags) i = DoPost(_REMOTE, '/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0/modify', { "Replace": { "0020,9165": "0020,9056", } }) instances = DoGet(_REMOTE, '/studies/%s/instances' % i['ID']) self.assertEqual(1, len(instances)) tags = DoGet(_REMOTE, '/instances/%s/tags?short' % instances[0]['ID']) self.assertTrue('0020,9165' in tags) self.assertEqual('0020,9056', tags['0020,9165']) def test_issue_146(self): # "Update Anonyization to 2019c" # https://bugs.orthanc-server.com/show_bug.cgi?id=146 def GetTags(study, params): a = DoPost(_REMOTE, '/studies/%s/anonymize' % study, params) ['ID'] b = DoGet(_REMOTE, '/studies/%s/instances' % a) self.assertEqual(1, len(b)) return DoGet(_REMOTE, '/instances/%s/tags?short' % b[0]['ID']) UploadInstance(_REMOTE, 'Issue146.dcm') study = '7c950970-321e4ab0-28446c5f-f94850f1-5c44634b' self.assertRaises(Exception, lambda: GetTags(study, { 'DicomVersion' : 'nope' })) tags2008 = GetTags(study, { 'DicomVersion' : '2008' }) tags2017c = GetTags(study, { 'DicomVersion' : '2017c' }) tags2021b = GetTags(study, { 'DicomVersion' : '2021b' }) tags2023b = GetTags(study, { 'DicomVersion' : '2023b' }) tagsDefault = GetTags(study, {}) orthancVersion = DoGet(_REMOTE, '/system') ['Version'] self.assertEqual('Orthanc %s - PS 3.15-2008 Table E.1-1' % orthancVersion, tags2008['0012,0063']) self.assertEqual('Orthanc %s - PS 3.15-2017c Table E.1-1 Basic Profile' % orthancVersion, tags2017c['0012,0063']) self.assertEqual('Orthanc %s - PS 3.15-2021b Table E.1-1 Basic Profile' % orthancVersion, tags2021b['0012,0063']) self.assertEqual('Orthanc %s - PS 3.15-2023b Table E.1-1 Basic Profile' % orthancVersion, tags2023b['0012,0063']) self.assertEqual(tagsDefault['0012,0063'], tags2023b['0012,0063']) self.assertEqual(len(tags2021b), len(tags2023b)) self.assertNotEqual(tags2021b, tags2023b) for t in [ tags2008, tags2017c, tags2021b, tags2023b, tagsDefault ]: self.assertTrue(t['0010,0010'].startswith('Anonymized')) self.assertEqual('1.2.840.10008.5.1.4.1.1.4', t['0008,0016']) self.assertEqual(36, len(t['0010,0020'])) # Length of a UUID self.assertEqual('YES', t['0012,0062']) for t in [ tags2008 ]: self.assertEqual('20200101', t['0008,0020']) for t in [ tags2017c, tags2021b, tags2023b, tagsDefault ]: self.assertEqual('', t['0008,0020']) # Study Date, anonymized between 2008 and 2017c for t in [ tags2008, tags2017c ]: self.assertEqual('HELLO^C', t['0050,0020']) self.assertEqual('HELLO^D', t['3006,0002']) for t in [ tags2021b, tags2023b, tagsDefault ]: self.assertFalse('0050,0020' in t) # Device Description, anonymized between 2017c and 2019c self.assertEqual('', t['3006,0002']) # StructureSetLabel, anonymized between 2019c and 2021b def test_anonymize_relationships_6(self): # 2020-10-20 (Salim Kanoun): "I think I have hit an # anonymization issue for the tag 0008,1250. This tags is a # sequence containing StudyUID / Series UID of related series. # [After anonymization,] this tag keep a reference of the # original Study/Series UID. # https://groups.google.com/g/orthanc-users/c/T0IokiActrI/m/L9K0vfscAAAJ UploadInstance(_REMOTE, '2020-11-16-SalimKanounAnonymization.dcm') tags = DoGet(_REMOTE, '/instances/%s/tags?short' % DoGet(_REMOTE, '/instances') [0]) self.assertEqual('1.2.840.113619.6.95.31.0.3.4.1.3175.13.6054282', tags['0008,1250'][0]['0020,000d']) self.assertEqual('1.3.12.2.1107.5.1.4.11047.30000019111306043635400005028', tags['0008,1250'][0]['0020,000e']) a = DoGet(_REMOTE, '/studies') self.assertEqual(1, len(a)) b = DoPost(_REMOTE, '/studies/%s/anonymize' % a[0], {}) ['ID'] c = DoGet(_REMOTE, '/studies/%s/instances' % b) self.assertEqual(1, len(c)) tags = DoGet(_REMOTE, '/instances/%s/tags?short' % c[0]['ID']) # In Orthanc <= 1.9.3, the two tests below failed self.assertNotEqual('1.2.840.113619.6.95.31.0.3.4.1.3175.13.6054282', tags['0008,1250'][0]['0020,000d']) self.assertNotEqual('1.3.12.2.1107.5.1.4.11047.30000019111306043635400005028', tags['0008,1250'][0]['0020,000e']) def test_modify_subsequences(self): # New in Orthanc 1.9.4 (cf. LSD-629) UploadInstance(_REMOTE, 'Issue22-NoPixelData.dcm') studies = DoGet(_REMOTE, '/studies') self.assertEqual(1, len(studies)) def GetTags(study): instances = DoGet(_REMOTE, '/studies/%s/instances' % study) self.assertEqual(1, len(instances)) return DoGet(_REMOTE, '/instances/%s/tags?short' % instances[0]['ID']) tags1 = GetTags(studies[0]) a = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { 'Replace' : { 'PatientName' : 'Hello1', 'DimensionIndexSequence[1].DimensionDescriptionLabel' : 'Hello2', 'DimensionIndexSequence[*].PatientName' : 'Hello3', 'ReferencedImageEvidenceSequence[2].ReferencedSeriesSequence[0].ReferencedSOPSequence[0].ReferencedSOPInstanceUID' : 'Hello4', 'DimensionOrganizationSequence[0].DimensionOrganizationUID' : '1.2.3.4', }, 'Remove' : [ 'ReferencedPerformedProcedureStepSequence', 'PerformedProtocolCodeSequence[0].CodeValue', 'SharedFunctionalGroupsSequence[*].ReferencedImageSequence[*].ReferencedSOPInstanceUID', 'SharedFunctionalGroupsSequence[*].ReferencedImageSequence[1].ReferencedSOPClassUID', 'SharedFunctionalGroupsSequence[2].ReferencedImageSequence', # Inexistent tag ] }) tags2 = GetTags(a['ID']) self.assertEqual('Anonymized1', tags1['0010,0010']) self.assertEqual('Hello1', tags2['0010,0010']) self.assertEqual('Stack ID', tags1['0020,9222'][0]['0020,9421']) self.assertEqual('In-Stack Position Number', tags1['0020,9222'][1]['0020,9421']) self.assertEqual('Stack ID', tags2['0020,9222'][0]['0020,9421']) self.assertEqual('Hello2', tags2['0020,9222'][1]['0020,9421']) for i in range(3): self.assertFalse('0010,0010' in tags1['0020,9222'][i]) self.assertEqual('Hello3', tags2['0020,9222'][i]['0010,0010']) self.assertEqual('1.3.46.670589.11.22237.5.20.1.1.7512.2014100814064168452', tags1['0008,9092'][2]['0008,1115'][0]['0008,1199'][0]['0008,1155']) self.assertEqual('Hello4', tags2['0008,9092'][2]['0008,1115'][0]['0008,1199'][0]['0008,1155']) self.assertEqual(tags1['0008,9092'][1]['0008,1115'][0]['0008,1199'][0]['0008,1155'], tags2['0008,9092'][1]['0008,1115'][0]['0008,1199'][0]['0008,1155']) self.assertTrue('0008,1111' in tags1) self.assertFalse('0008,1111' in tags2) self.assertTrue('0008,0100' in tags1['0040,0260'][0]) self.assertFalse('0008,0100' in tags2['0040,0260'][0]) for i in range(3): self.assertTrue('0008,1155' in tags1['5200,9229'][0]['0008,1140'][i]) self.assertFalse('0008,1155' in tags2['5200,9229'][0]['0008,1140'][i]) self.assertTrue('0008,1150' in tags1['5200,9229'][0]['0008,1140'][i]) self.assertTrue('0008,1150' in tags2['5200,9229'][0]['0008,1140'][0]) self.assertFalse('0008,1150' in tags2['5200,9229'][0]['0008,1140'][1]) self.assertTrue('0008,1150' in tags2['5200,9229'][0]['0008,1140'][2]) self.assertEqual('1.3.46.670589.11.22237.5.0.11272.2014100816243076000', tags1['0020,9221'][0]['0020,9164']) self.assertEqual('1.2.3.4', tags2['0020,9221'][0]['0020,9164']) a = DoPost(_REMOTE, '/studies/%s/anonymize' % studies[0], { 'Replace' : { 'DimensionIndexSequence[1].DimensionDescriptionLabel' : 'Hello1', 'DimensionOrganizationSequence[0].DimensionOrganizationUID' : '1.2.3.4', }, 'Remove' : [ 'SharedFunctionalGroupsSequence[*].ReferencedImageSequence[*].ReferencedSOPInstanceUID', # 5200,9229 ], 'Keep' : [ 'ReferencedImageEvidenceSequence', # 0008,9092 'DimensionIndexSequence', # 0020,9222 'PerFrameFunctionalGroupsSequence[*].2005,140f[*].SOPInstanceUID', # 5200,9230 '(5200,9230)[*].2005,140f[*].(0008,0023)', # Compatibility with Orthanc 1.9.4 '(5200,9230)[*].2005,140f[*].(0008,0033)', # Compatibility with Orthanc 1.9.4 ], 'DicomVersion' : '2021b', 'KeepPrivateTags' : True # Compatibility with Orthanc 1.9.4 }) tags3 = GetTags(a['ID']) # UIDs for i in [ '0008,0018', '0010,0020', '0008,0018', '0010,0020' ]: self.assertNotEqual(tags1[i], tags3[i]) self.assertNotEqual(tags1['0020,9221'][0]['0020,9164'], tags3['0020,9221'][0]['0020,9164']) self.assertNotEqual(tags1['5200,9229'][0]['2005,140e'][0]['0008,0014'], tags3['5200,9229'][0]['2005,140e'][0]['0008,0014']) # http://dicom.nema.org/medical/dicom/current/output/chtml/part15/chapter_E.html#table_E.1-1 # Removals (X) for i in [ '0008,0021', '0008,002a', '0008,0031', '0008,1030', '0008,103e', '0008,1111', '0010,21c0', '0040,0006', '0040,0241', '0040,0244', '0040,0245', '0040,0250', '0040,0251', '0040,0253', '0040,0254', '0040,0555', ]: self.assertTrue(i in tags1) self.assertFalse(i in tags3) # Clearings (Z) for i in [ '0008,0020', '0008,0023', '0008,0030', '0008,0033' ]: self.assertNotEqual('', tags1[i]) self.assertEqual('', tags3[i]) # Replace self.assertEqual('In-Stack Position Number', tags1['0020,9222'][1]['0020,9421']) self.assertEqual('Hello1', tags3['0020,9222'][1]['0020,9421']) self.assertEqual('1.2.3.4', tags3['0020,9221'][0]['0020,9164']) # "Keep" on DimensionIndexSequence for i in range(3): self.assertEqual(tags1['0020,9222'][i]['0020,9164'], tags3['0020,9222'][i]['0020,9164']) # "Keep" on ReferencedImageEvidenceSequence self.assertEqual(json.dumps(tags1['0008,9092']), json.dumps(tags3['0008,9092'])) # "Keep" on PerFrameFunctionalGroupsSequence self.assertEqual(json.dumps(tags1['5200,9230']), json.dumps(tags3['5200,9230'])) # "Remove" on SharedFunctionalGroupsSequence for i in range(3): self.assertTrue('0008,1155' in tags1['5200,9229'][0]['0008,1140'][i]) self.assertFalse('0008,1155' in tags3['5200,9229'][0]['0008,1140'][i]) def test_bulk_modify(self): # New in Orthanc 1.9.4 def GetModified(lst, resourceType, expectedCount = None): m = map(lambda x: x['ID'], filter(lambda x: x['Type'] == resourceType, lst['Resources'])) if expectedCount != None: self.assertEqual(expectedCount, len(m)) return m instance = UploadInstance(_REMOTE, 'DummyCT.dcm') ['ID'] series = DoGet(_REMOTE, '/series') [0] study = DoGet(_REMOTE, '/studies') [0] patient = DoGet(_REMOTE, '/patients') [0] a = DoPost(_REMOTE, '/tools/bulk-modify', { 'Resources' : [ instance ] }) self.assertNotEqual(instance, GetModified(a, 'Instance', 1) [0]) self.assertEqual(series, GetModified(a, 'Series', 1) [0]) self.assertEqual(study, GetModified(a, 'Study', 1) [0]) self.assertEqual(patient, GetModified(a, 'Patient', 1) [0]) b = DoPost(_REMOTE, '/tools/bulk-anonymize', { 'Resources' : [ instance ] }) self.assertNotEqual(instance, GetModified(b, 'Instance', 1) [0]) self.assertNotEqual(series, GetModified(b, 'Series', 1) [0]) self.assertNotEqual(study, GetModified(b, 'Study', 1) [0]) self.assertNotEqual(patient, GetModified(b, 'Patient', 1) [0]) self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) DoPost(_REMOTE, '/tools/bulk-delete', { 'Resources' : GetModified(b, 'Patient', 1) + GetModified(a, 'Instance', 1) }) knee1 = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') ['ID'] knee2 = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') ['ID'] brainix = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') ['ID'] self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) self.assertEqual(3, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(3, len(DoGet(_REMOTE, '/patients'))) a = DoPost(_REMOTE, '/tools/bulk-modify', { 'Resources' : [ knee1, brainix ] }) self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) self.assertEqual(3, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(3, len(DoGet(_REMOTE, '/patients'))) for i in GetModified(a, 'Instance', 2): self.assertTrue(not i in [ instance, knee1, knee2, brainix ]) self.assertTrue(DoGet(_REMOTE, '/instances/%s/metadata/ModifiedFrom' % i) in [ knee1, brainix ]) b = GetModified(a, 'Series', 2) self.assertTrue(DoGet(_REMOTE, '/instances/%s/series' % knee1) ['ID'] in b) self.assertTrue(DoGet(_REMOTE, '/instances/%s/series' % brainix) ['ID'] in b) self.assertFalse(DoGet(_REMOTE, '/instances/%s/series' % knee2) ['ID'] in b) self.assertFalse(DoGet(_REMOTE, '/instances/%s/series' % instance) ['ID'] in b) b = GetModified(a, 'Study', 2) self.assertTrue(DoGet(_REMOTE, '/instances/%s/study' % knee1) ['ID'] in b) self.assertTrue(DoGet(_REMOTE, '/instances/%s/study' % brainix) ['ID'] in b) self.assertTrue(DoGet(_REMOTE, '/instances/%s/study' % knee2) ['ID'] in b) self.assertFalse(DoGet(_REMOTE, '/instances/%s/study' % instance) ['ID'] in b) b = GetModified(a, 'Patient', 2) self.assertTrue(DoGet(_REMOTE, '/instances/%s/patient' % knee1) ['ID'] in b) self.assertTrue(DoGet(_REMOTE, '/instances/%s/patient' % brainix) ['ID'] in b) self.assertTrue(DoGet(_REMOTE, '/instances/%s/patient' % knee2) ['ID'] in b) self.assertFalse(DoGet(_REMOTE, '/instances/%s/patient' % instance) ['ID'] in b) DoPost(_REMOTE, '/tools/bulk-delete', { 'Resources' : GetModified(a, 'Instance', 2) }) sourceInstances = DoGet(_REMOTE, '/instances') sourceSeries = DoGet(_REMOTE, '/series') sourceStudies = DoGet(_REMOTE, '/studies') sourcePatients = DoGet(_REMOTE, '/patients') self.assertEqual(4, len(sourceInstances)) self.assertEqual(4, len(sourceSeries)) self.assertEqual(3, len(sourceStudies)) self.assertEqual(3, len(sourcePatients)) a = DoPost(_REMOTE, '/tools/bulk-anonymize', { 'Resources' : [ knee1, brainix ] }) self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) self.assertEqual(6, len(DoGet(_REMOTE, '/series'))) self.assertEqual(5, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(5, len(DoGet(_REMOTE, '/patients'))) for i in GetModified(a, 'Instance', 2): self.assertFalse(i in sourceInstances) self.assertTrue(DoGet(_REMOTE, '/instances/%s/metadata/AnonymizedFrom' % i) in [ knee1, brainix ]) for i in GetModified(a, 'Series', 2): self.assertFalse(i in sourceSeries) self.assertTrue(DoGet(_REMOTE, '/series/%s/metadata/AnonymizedFrom' % i) in sourceSeries) for i in GetModified(a, 'Study', 2): self.assertFalse(i in sourceStudies) self.assertTrue(DoGet(_REMOTE, '/studies/%s/metadata/AnonymizedFrom' % i) in sourceStudies) for i in GetModified(a, 'Patient', 2): self.assertFalse(i in sourcePatients) self.assertTrue(DoGet(_REMOTE, '/patients/%s/metadata/AnonymizedFrom' % i) in sourcePatients) DoPost(_REMOTE, '/tools/bulk-delete', { 'Resources' : GetModified(a, 'Patient', 2) }) self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) self.assertEqual(3, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(3, len(DoGet(_REMOTE, '/patients'))) DoPost(_REMOTE, '/tools/bulk-delete', { 'Resources' : [ instance, DoGet(_REMOTE, '/instances/%s/patient' % knee1) ['ID'], DoGet(_REMOTE, '/instances/%s/series' % brainix) ['ID'] ] }) self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) def test_dicom_to_json_format(self): # Test new output formats for DICOM tags introduced in 1.9.4 instance = UploadInstance(_REMOTE, 'DummyCT.dcm') ['ID'] patient = DoGet(_REMOTE, '/instances/%s/patient' % instance) ['ID'] study = DoGet(_REMOTE, '/instances/%s/study' % instance) ['ID'] series = DoGet(_REMOTE, '/instances/%s/series' % instance) ['ID'] self.assertEqual('KNIX', DoGet(_REMOTE, '/instances/%s/tags' % instance) ['0010,0010']['Value']) self.assertEqual('KNIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % instance) ['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/instances/%s/tags?short' % instance) ['0010,0010']) self.assertEqual('PatientName', DoGet(_REMOTE, '/instances/%s/tags?full' % instance) ['0010,0010']['Name']) self.assertEqual('KNIX', DoGet(_REMOTE, '/instances/%s/tags?full' % instance) ['0010,0010']['Value']) self.assertEqual('String', DoGet(_REMOTE, '/instances/%s/tags?full' % instance) ['0010,0010']['Type']) # Test "GetInstanceHeader()" in "OrthancRestResources.cpp" self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % instance) ['0002,0010']['Value']) self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % instance) ['TransferSyntaxUID']) self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % instance) ['0002,0010']) self.assertEqual('TransferSyntaxUID', DoGet(_REMOTE, '/instances/%s/header?full' % instance) ['0002,0010']['Name']) self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?full' % instance) ['0002,0010']['Value']) self.assertEqual('String', DoGet(_REMOTE, '/instances/%s/header?full' % instance) ['0002,0010']['Type']) # Test "ListResources()" in "OrthancRestResources.cpp" self.assertEqual('KNIX', DoGet(_REMOTE, '/patients?expand') [0]['MainDicomTags']['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/patients?expand&short') [0]['MainDicomTags']['0010,0010']) self.assertEqual('KNIX', DoGet(_REMOTE, '/patients?expand&full') [0]['MainDicomTags']['0010,0010']['Value']) self.assertEqual('PatientName', DoGet(_REMOTE, '/patients?expand&full') [0]['MainDicomTags']['0010,0010']['Name']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies?expand') [0]['PatientMainDicomTags']['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies?expand&short') [0]['PatientMainDicomTags']['0010,0010']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies?expand&full') [0]['PatientMainDicomTags']['0010,0010']['Value']) self.assertEqual('PatientName', DoGet(_REMOTE, '/studies?expand&full') [0]['PatientMainDicomTags']['0010,0010']['Name']) self.assertEqual('20070101', DoGet(_REMOTE, '/studies?expand') [0]['MainDicomTags']['StudyDate']) self.assertEqual('20070101', DoGet(_REMOTE, '/studies?expand&short') [0]['MainDicomTags']['0008,0020']) self.assertEqual('20070101', DoGet(_REMOTE, '/studies?expand&full') [0]['MainDicomTags']['0008,0020']['Value']) self.assertEqual('StudyDate', DoGet(_REMOTE, '/studies?expand&full') [0]['MainDicomTags']['0008,0020']['Name']) self.assertEqual('20070101', DoGet(_REMOTE, '/series?expand') [0]['MainDicomTags']['SeriesDate']) self.assertEqual('20070101', DoGet(_REMOTE, '/series?expand&short') [0]['MainDicomTags']['0008,0021']) self.assertEqual('20070101', DoGet(_REMOTE, '/series?expand&full') [0]['MainDicomTags']['0008,0021']['Value']) self.assertEqual('SeriesDate', DoGet(_REMOTE, '/series?expand&full') [0]['MainDicomTags']['0008,0021']['Name']) self.assertEqual('20070101', DoGet(_REMOTE, '/instances?expand') [0]['MainDicomTags']['InstanceCreationDate']) self.assertEqual('20070101', DoGet(_REMOTE, '/instances?expand&short') [0]['MainDicomTags']['0008,0012']) self.assertEqual('20070101', DoGet(_REMOTE, '/instances?expand&full') [0]['MainDicomTags']['0008,0012']['Value']) self.assertEqual('InstanceCreationDate', DoGet(_REMOTE, '/instances?expand&full') [0]['MainDicomTags']['0008,0012']['Name']) # Test "GetSingleResource()" in "OrthancRestResources.cpp" self.assertEqual('KNIX', DoGet(_REMOTE, '/patients/%s' % patient) ['MainDicomTags']['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/patients/%s?short' % patient) ['MainDicomTags']['0010,0010']) self.assertEqual('KNIX', DoGet(_REMOTE, '/patients/%s?full' % patient) ['MainDicomTags']['0010,0010']['Value']) self.assertEqual('PatientName', DoGet(_REMOTE, '/patients/%s?full' % patient) ['MainDicomTags']['0010,0010']['Name']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies/%s' % study) ['PatientMainDicomTags']['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies/%s?short' % study) ['PatientMainDicomTags']['0010,0010']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies/%s?full' % study) ['PatientMainDicomTags']['0010,0010']['Value']) self.assertEqual('PatientName', DoGet(_REMOTE, '/studies/%s?full' % study) ['PatientMainDicomTags']['0010,0010']['Name']) self.assertEqual('20070101', DoGet(_REMOTE, '/studies/%s' % study) ['MainDicomTags']['StudyDate']) self.assertEqual('20070101', DoGet(_REMOTE, '/studies/%s?short' % study) ['MainDicomTags']['0008,0020']) self.assertEqual('20070101', DoGet(_REMOTE, '/studies/%s?full' % study) ['MainDicomTags']['0008,0020']['Value']) self.assertEqual('StudyDate', DoGet(_REMOTE, '/studies/%s?full' % study) ['MainDicomTags']['0008,0020']['Name']) self.assertEqual('20070101', DoGet(_REMOTE, '/series/%s' % series) ['MainDicomTags']['SeriesDate']) self.assertEqual('20070101', DoGet(_REMOTE, '/series/%s?short' % series) ['MainDicomTags']['0008,0021']) self.assertEqual('20070101', DoGet(_REMOTE, '/series/%s?full' % series) ['MainDicomTags']['0008,0021']['Value']) self.assertEqual('SeriesDate', DoGet(_REMOTE, '/series/%s?full' % series) ['MainDicomTags']['0008,0021']['Name']) self.assertEqual('20070101', DoGet(_REMOTE, '/instances/%s' % instance) ['MainDicomTags']['InstanceCreationDate']) self.assertEqual('20070101', DoGet(_REMOTE, '/instances/%s?short' % instance) ['MainDicomTags']['0008,0012']) self.assertEqual('20070101', DoGet(_REMOTE, '/instances/%s?full' % instance) ['MainDicomTags']['0008,0012']['Value']) self.assertEqual('InstanceCreationDate', DoGet(_REMOTE, '/instances/%s?full' % instance) ['MainDicomTags']['0008,0012']['Name']) # Test "Find()" in "OrthancRestResources.cpp" a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : {}, 'Expand' : True }) self.assertEqual('20070101', a[0]['MainDicomTags']['StudyDate']) self.assertEqual('KNIX', a[0]['PatientMainDicomTags']['PatientName']) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : {}, 'Expand' : True, 'Short' : True }) self.assertEqual('20070101', a[0]['MainDicomTags']['0008,0020']) self.assertEqual('KNIX', a[0]['PatientMainDicomTags']['0010,0010']) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : {}, 'Expand' : True, 'Full' : True }) self.assertEqual('20070101', a[0]['MainDicomTags']['0008,0020']['Value']) self.assertEqual('KNIX', a[0]['PatientMainDicomTags']['0010,0010']['Value']) self.assertEqual('StudyDate', a[0]['MainDicomTags']['0008,0020']['Name']) self.assertEqual('PatientName', a[0]['PatientMainDicomTags']['0010,0010']['Name']) # Test "GetChildResources()" in "OrthancRestResources.cpp" self.assertEqual('20070101', DoGet(_REMOTE, '/patients/%s/studies' % patient) [0]['MainDicomTags']['StudyDate']) self.assertEqual('20070101', DoGet(_REMOTE, '/patients/%s/studies?short' % patient) [0]['MainDicomTags']['0008,0020']) self.assertEqual('20070101', DoGet(_REMOTE, '/patients/%s/studies?full' % patient) [0]['MainDicomTags']['0008,0020']['Value']) self.assertEqual('StudyDate', DoGet(_REMOTE, '/patients/%s/studies?full' % patient) [0]['MainDicomTags']['0008,0020']['Name']) self.assertEqual('20070101', DoGet(_REMOTE, '/patients/%s/series' % patient) [0]['MainDicomTags']['SeriesDate']) self.assertEqual('20070101', DoGet(_REMOTE, '/patients/%s/series?short' % patient) [0]['MainDicomTags']['0008,0021']) self.assertEqual('20070101', DoGet(_REMOTE, '/patients/%s/series?full' % patient) [0]['MainDicomTags']['0008,0021']['Value']) self.assertEqual('SeriesDate', DoGet(_REMOTE, '/patients/%s/series?full' % patient) [0]['MainDicomTags']['0008,0021']['Name']) self.assertEqual('20070101', DoGet(_REMOTE, '/patients/%s/instances' % patient) [0]['MainDicomTags']['InstanceCreationDate']) self.assertEqual('20070101', DoGet(_REMOTE, '/patients/%s/instances?short' % patient) [0]['MainDicomTags']['0008,0012']) self.assertEqual('20070101', DoGet(_REMOTE, '/patients/%s/instances?full' % patient) [0]['MainDicomTags']['0008,0012']['Value']) self.assertEqual('InstanceCreationDate', DoGet(_REMOTE, '/patients/%s/instances?full' % patient) [0]['MainDicomTags']['0008,0012']['Name']) self.assertEqual('20070101', DoGet(_REMOTE, '/studies/%s/series' % study) [0]['MainDicomTags']['SeriesDate']) self.assertEqual('20070101', DoGet(_REMOTE, '/studies/%s/series?short' % study) [0]['MainDicomTags']['0008,0021']) self.assertEqual('20070101', DoGet(_REMOTE, '/studies/%s/series?full' % study) [0]['MainDicomTags']['0008,0021']['Value']) self.assertEqual('SeriesDate', DoGet(_REMOTE, '/studies/%s/series?full' % study) [0]['MainDicomTags']['0008,0021']['Name']) self.assertEqual('20070101', DoGet(_REMOTE, '/studies/%s/instances' % study) [0]['MainDicomTags']['InstanceCreationDate']) self.assertEqual('20070101', DoGet(_REMOTE, '/studies/%s/instances?short' % study) [0]['MainDicomTags']['0008,0012']) self.assertEqual('20070101', DoGet(_REMOTE, '/studies/%s/instances?full' % study) [0]['MainDicomTags']['0008,0012']['Value']) self.assertEqual('InstanceCreationDate', DoGet(_REMOTE, '/studies/%s/instances?full' % study) [0]['MainDicomTags']['0008,0012']['Name']) self.assertEqual('20070101', DoGet(_REMOTE, '/series/%s/instances' % series) [0]['MainDicomTags']['InstanceCreationDate']) self.assertEqual('20070101', DoGet(_REMOTE, '/series/%s/instances?short' % series) [0]['MainDicomTags']['0008,0012']) self.assertEqual('20070101', DoGet(_REMOTE, '/series/%s/instances?full' % series) [0]['MainDicomTags']['0008,0012']['Value']) self.assertEqual('InstanceCreationDate', DoGet(_REMOTE, '/series/%s/instances?full' % series) [0]['MainDicomTags']['0008,0012']['Name']) # Test "GetParentResource()" in "OrthancRestResources.cpp" self.assertEqual('KNIX', DoGet(_REMOTE, '/instances/%s/patient' % instance) ['MainDicomTags']['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/instances/%s/patient?short' % instance) ['MainDicomTags']['0010,0010']) self.assertEqual('KNIX', DoGet(_REMOTE, '/instances/%s/patient?full' % instance) ['MainDicomTags']['0010,0010']['Value']) self.assertEqual('PatientName', DoGet(_REMOTE, '/instances/%s/patient?full' % instance) ['MainDicomTags']['0010,0010']['Name']) self.assertEqual('20070101', DoGet(_REMOTE, '/instances/%s/study' % instance) ['MainDicomTags']['StudyDate']) self.assertEqual('20070101', DoGet(_REMOTE, '/instances/%s/study?short' % instance) ['MainDicomTags']['0008,0020']) self.assertEqual('20070101', DoGet(_REMOTE, '/instances/%s/study?full' % instance) ['MainDicomTags']['0008,0020']['Value']) self.assertEqual('StudyDate', DoGet(_REMOTE, '/instances/%s/study?full' % instance) ['MainDicomTags']['0008,0020']['Name']) self.assertEqual('20070101', DoGet(_REMOTE, '/instances/%s/series' % instance) ['MainDicomTags']['SeriesDate']) self.assertEqual('20070101', DoGet(_REMOTE, '/instances/%s/series?short' % instance) ['MainDicomTags']['0008,0021']) self.assertEqual('20070101', DoGet(_REMOTE, '/instances/%s/series?full' % instance) ['MainDicomTags']['0008,0021']['Value']) self.assertEqual('SeriesDate', DoGet(_REMOTE, '/instances/%s/series?full' % instance) ['MainDicomTags']['0008,0021']['Name']) self.assertEqual('KNIX', DoGet(_REMOTE, '/series/%s/patient' % series) ['MainDicomTags']['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/series/%s/patient?short' % series) ['MainDicomTags']['0010,0010']) self.assertEqual('KNIX', DoGet(_REMOTE, '/series/%s/patient?full' % series) ['MainDicomTags']['0010,0010']['Value']) self.assertEqual('PatientName', DoGet(_REMOTE, '/series/%s/patient?full' % series) ['MainDicomTags']['0010,0010']['Name']) self.assertEqual('20070101', DoGet(_REMOTE, '/series/%s/study' % series) ['MainDicomTags']['StudyDate']) self.assertEqual('20070101', DoGet(_REMOTE, '/series/%s/study?short' % series) ['MainDicomTags']['0008,0020']) self.assertEqual('20070101', DoGet(_REMOTE, '/series/%s/study?full' % series) ['MainDicomTags']['0008,0020']['Value']) self.assertEqual('StudyDate', DoGet(_REMOTE, '/series/%s/study?full' % series) ['MainDicomTags']['0008,0020']['Name']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies/%s/patient' % study) ['MainDicomTags']['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies/%s/patient?short' % study) ['MainDicomTags']['0010,0010']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies/%s/patient?full' % study) ['MainDicomTags']['0010,0010']['Value']) self.assertEqual('PatientName', DoGet(_REMOTE, '/studies/%s/patient?full' % study) ['MainDicomTags']['0010,0010']['Name']) # Test "GetChildInstancesTags()" in "OrthancRestResources.cpp" self.assertEqual('KNIX', DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % patient) [instance]['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/patients/%s/instances-tags?short' % patient) [instance]['0010,0010']) self.assertEqual('KNIX', DoGet(_REMOTE, '/patients/%s/instances-tags' % patient) [instance]['0010,0010']['Value']) self.assertEqual('PatientName', DoGet(_REMOTE, '/patients/%s/instances-tags' % patient) [instance]['0010,0010']['Name']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies/%s/instances-tags?simplify' % study) [instance]['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies/%s/instances-tags?short' % study) [instance]['0010,0010']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies/%s/instances-tags' % study) [instance]['0010,0010']['Value']) self.assertEqual('PatientName', DoGet(_REMOTE, '/studies/%s/instances-tags' % study) [instance]['0010,0010']['Name']) self.assertEqual('KNIX', DoGet(_REMOTE, '/series/%s/instances-tags?simplify' % series) [instance]['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/series/%s/instances-tags?short' % series) [instance]['0010,0010']) self.assertEqual('KNIX', DoGet(_REMOTE, '/series/%s/instances-tags' % series) [instance]['0010,0010']['Value']) self.assertEqual('PatientName', DoGet(_REMOTE, '/series/%s/instances-tags' % series) [instance]['0010,0010']['Name']) # Test "GetSharedTags()" in "OrthancRestResources.cpp" self.assertEqual('KNIX', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % patient) ['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % patient) ['0010,0010']) self.assertEqual('KNIX', DoGet(_REMOTE, '/patients/%s/shared-tags' % patient) ['0010,0010']['Value']) self.assertEqual('PatientName', DoGet(_REMOTE, '/patients/%s/shared-tags' % patient) ['0010,0010']['Name']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies/%s/shared-tags?simplify' % study) ['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies/%s/shared-tags?short' % study) ['0010,0010']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies/%s/shared-tags' % study) ['0010,0010']['Value']) self.assertEqual('PatientName', DoGet(_REMOTE, '/studies/%s/shared-tags' % study) ['0010,0010']['Name']) self.assertEqual('KNIX', DoGet(_REMOTE, '/series/%s/shared-tags?simplify' % series) ['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/series/%s/shared-tags?short' % series) ['0010,0010']) self.assertEqual('KNIX', DoGet(_REMOTE, '/series/%s/shared-tags' % series) ['0010,0010']['Value']) self.assertEqual('PatientName', DoGet(_REMOTE, '/series/%s/shared-tags' % series) ['0010,0010']['Name']) # Test "GetModule()" in "OrthancRestResources.cpp" self.assertEqual('KNIX', DoGet(_REMOTE, '/patients/%s/module' % patient) ['0010,0010']['Value']) self.assertEqual('KNIX', DoGet(_REMOTE, '/patients/%s/module?simplify' % patient) ['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/patients/%s/module?short' % patient) ['0010,0010']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies/%s/module-patient' % study) ['0010,0010']['Value']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % study) ['PatientName']) self.assertEqual('KNIX', DoGet(_REMOTE, '/studies/%s/module-patient?short' % study) ['0010,0010']) self.assertEqual('Knee (R)', DoGet(_REMOTE, '/studies/%s/module' % study) ['0008,1030']['Value']) self.assertEqual('Knee (R)', DoGet(_REMOTE, '/studies/%s/module?simplify' % study) ['StudyDescription']) self.assertEqual('Knee (R)', DoGet(_REMOTE, '/studies/%s/module?short' % study) ['0008,1030']) self.assertEqual('AX. FSE PD', DoGet(_REMOTE, '/series/%s/module' % series) ['0008,103e']['Value']) self.assertEqual('AX. FSE PD', DoGet(_REMOTE, '/series/%s/module?simplify' % series) ['SeriesDescription']) self.assertEqual('AX. FSE PD', DoGet(_REMOTE, '/series/%s/module?short' % series) ['0008,103e']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', DoGet(_REMOTE, '/instances/%s/module' % instance) ['0008,0018']['Value']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', DoGet(_REMOTE, '/instances/%s/module?simplify' % instance) ['SOPInstanceUID']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', DoGet(_REMOTE, '/instances/%s/module?short' % instance) ['0008,0018']) # Test "ListQueryAnswers()" in "OrthancRestModalities.cpp" a = DoPost(_REMOTE, '/modalities/self/query', { 'Level' : 'Study', 'Query' : { 'PatientID' : '*' }}) ['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) self.assertEqual('ozp00SjY2xG', DoGet(_REMOTE, '/queries/%s/answers?expand' % a) [0]['0010,0020']['Value']) self.assertEqual('PatientID', DoGet(_REMOTE, '/queries/%s/answers?expand' % a) [0]['0010,0020']['Name']) self.assertEqual('ozp00SjY2xG', DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) [0]['PatientID']) self.assertEqual('ozp00SjY2xG', DoGet(_REMOTE, '/queries/%s/answers?expand&short' % a) [0]['0010,0020']) # Test "GetQueryOneAnswer()" in "OrthancRestModalities.cpp" self.assertEqual('ozp00SjY2xG', DoGet(_REMOTE, '/queries/%s/answers/0/content' % a) ['0010,0020']['Value']) self.assertEqual('PatientID', DoGet(_REMOTE, '/queries/%s/answers/0/content' % a) ['0010,0020']['Name']) self.assertEqual('ozp00SjY2xG', DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) ['PatientID']) self.assertEqual('ozp00SjY2xG', DoGet(_REMOTE, '/queries/%s/answers/0/content?short' % a) ['0010,0020']) # Test "GetQueryArguments()" in "OrthancRestModalities.cpp" self.assertEqual('*', DoGet(_REMOTE, '/queries/%s/query' % a) ['0010,0020']['Value']) self.assertEqual('PatientID', DoGet(_REMOTE, '/queries/%s/query' % a) ['0010,0020']['Name']) self.assertEqual('*', DoGet(_REMOTE, '/queries/%s/query?simplify' % a) ['PatientID']) self.assertEqual('*', DoGet(_REMOTE, '/queries/%s/query?short' % a) ['0010,0020']) # Test "BulkContent()" in "OrthancRestResources.cpp" a = DoPost(_REMOTE, '/tools/bulk-content', { 'Resources' : [ patient, study, series, instance ] }) self.assertEqual(4, len(a)) self.assertEqual('ozp00SjY2xG', a[0]['MainDicomTags']['PatientID']) self.assertEqual('Knee (R)', a[1]['MainDicomTags']['StudyDescription']) self.assertEqual('KNIX', a[1]['PatientMainDicomTags']['PatientName']) self.assertEqual('AX. FSE PD', a[2]['MainDicomTags']['SeriesDescription']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a[3]['MainDicomTags']['SOPInstanceUID']) a = DoPost(_REMOTE, '/tools/bulk-content', { 'Resources' : [ patient, study, series, instance ], 'Short': True }) self.assertEqual(4, len(a)) self.assertEqual('ozp00SjY2xG', a[0]['MainDicomTags']['0010,0020']) self.assertEqual('Knee (R)', a[1]['MainDicomTags']['0008,1030']) self.assertEqual('KNIX', a[1]['PatientMainDicomTags']['0010,0010']) self.assertEqual('AX. FSE PD', a[2]['MainDicomTags']['0008,103e']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a[3]['MainDicomTags']['0008,0018']) a = DoPost(_REMOTE, '/tools/bulk-content', { 'Resources' : [ patient, study, series, instance ], 'Full': True }) self.assertEqual(4, len(a)) self.assertEqual('ozp00SjY2xG', a[0]['MainDicomTags']['0010,0020']['Value']) self.assertEqual('PatientID', a[0]['MainDicomTags']['0010,0020']['Name']) self.assertEqual('Knee (R)', a[1]['MainDicomTags']['0008,1030']['Value']) self.assertEqual('StudyDescription', a[1]['MainDicomTags']['0008,1030']['Name']) self.assertEqual('KNIX', a[1]['PatientMainDicomTags']['0010,0010']['Value']) self.assertEqual('PatientName', a[1]['PatientMainDicomTags']['0010,0010']['Name']) self.assertEqual('AX. FSE PD', a[2]['MainDicomTags']['0008,103e']['Value']) self.assertEqual('SeriesDescription', a[2]['MainDicomTags']['0008,103e']['Name']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a[3]['MainDicomTags']['0008,0018']['Value']) self.assertEqual('SOPInstanceUID', a[3]['MainDicomTags']['0008,0018']['Name']) def test_bulk_content(self): # New in Orthanc 1.9.4 knee1 = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') ['ID'] knee2 = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') ['ID'] brainix = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') ['ID'] brainixHierarchy = [ DoGet(_REMOTE, '/instances/%s/patient' % brainix) ['ID'], DoGet(_REMOTE, '/instances/%s/study' % brainix) ['ID'], DoGet(_REMOTE, '/instances/%s/series' % brainix) ['ID'], brainix, ] a = DoPost(_REMOTE, '/tools/bulk-content', { 'Resources' : brainixHierarchy }) self.assertEqual(4, len(a)) b = map(lambda x: x['ID'], a) for i in range(4): self.assertEqual(brainixHierarchy[i], b[i]) self.assertTrue('Metadata' in a[i]) for (level, index) in [ ('Patient', 0), ('Study', 1), ('Series', 2), ('Instance', 3), ]: a = DoPost(_REMOTE, '/tools/bulk-content', { 'Resources' : brainixHierarchy, 'Level' : level }) self.assertEqual(1, len(a)) self.assertEqual(level, a[0]['Type']) self.assertEqual(brainixHierarchy[index], a[0]['ID']) self.assertTrue('Metadata' in a[0]) a = DoPost(_REMOTE, '/tools/bulk-content', { 'Resources' : [ brainix ], 'Level' : level, 'Metadata' : False }) self.assertEqual(1, len(a)) self.assertEqual(level, a[0]['Type']) self.assertEqual(brainixHierarchy[index], a[0]['ID']) self.assertFalse('Metadata' in a[0]) a = DoPost(_REMOTE, '/tools/bulk-content', { 'Resources' : [ knee1, knee2, brainix ] }) self.assertEqual(3, len(a)) for item in a: self.assertEqual('Instance', item['Type']) b = map(lambda x: x['ID'], a) self.assertTrue(knee1 in b) self.assertTrue(knee2 in b) self.assertTrue(brainix in b) a = DoPost(_REMOTE, '/tools/bulk-content', { 'Resources' : [ knee1, knee2 ], 'Level' : 'Series' }) self.assertEqual(2, len(a)) for item in a: self.assertEqual('Series', item['Type']) b = map(lambda x: x['ID'], a) self.assertTrue(DoGet(_REMOTE, '/instances/%s' % knee1) ['ParentSeries'] in b) self.assertTrue(DoGet(_REMOTE, '/instances/%s' % knee2) ['ParentSeries'] in b) a = DoPost(_REMOTE, '/tools/bulk-content', { 'Resources' : [ knee1, knee2 ], 'Level' : 'Study', 'Metadata' : False }) self.assertEqual(1, len(a)) self.assertEqual(DoGet(_REMOTE, '/instances/%s/study' % knee1) ['ID'], a[0]['ID']) self.assertEqual('Study', a[0]['Type']) self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) self.assertFalse('Metadata' in a[0]) a = DoPost(_REMOTE, '/tools/bulk-content', { 'Resources' : [ knee1, knee2 ], 'Level' : 'Patient', 'Metadata' : True }) self.assertEqual(1, len(a)) self.assertEqual(DoGet(_REMOTE, '/instances/%s/patient' % knee1) ['ID'], a[0]['ID']) self.assertEqual('Patient', a[0]['Type']) self.assertEqual('KNEE', a[0]['MainDicomTags']['PatientName']) self.assertTrue('Metadata' in a[0]) if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): self.assertEqual(2, len(a[0]['Metadata'])) self.assertTrue('MainDicomTagsSignature' in a[0]['Metadata']) else: self.assertEqual(1, len(a[0]['Metadata'])) self.assertTrue('LastUpdate' in a[0]['Metadata']) for level in [ 'Instance', 'Series', 'Study', 'Patient' ]: a = DoPost(_REMOTE, '/tools/bulk-content', { 'Resources' : [ knee1, brainix ], 'Level' : level }) self.assertEqual(2, len(a)) for item in a: self.assertEqual(level, item['Type']) b = map(lambda x: x['ID'], a) if level == 'Instance': self.assertTrue(knee1 in b) self.assertTrue(brainix in b) else: self.assertTrue(DoGet(_REMOTE, '/instances/%s/%s' % (knee1, level.lower())) ['ID'] in b) self.assertTrue(DoGet(_REMOTE, '/instances/%s/%s' % (brainix, level.lower())) ['ID'] in b) def test_split_instances(self): # New in 1.9.4 knee1 = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') ['ID'] knee2 = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') ['ID'] study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' series = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) instances = DoGet(_REMOTE, '/instances') self.assertEqual(2, len(instances)) self.assertEqual('1', DoGet(_REMOTE, '/instances/%s/tags?simplify' % knee1) ['InstanceNumber']) self.assertEqual('2', DoGet(_REMOTE, '/instances/%s/tags?simplify' % knee2) ['InstanceNumber']) for i in [ knee1, knee2 ]: self.assertEqual(series, DoGet(_REMOTE, '/instances/%s/series' % i) ['ID']) self.assertEqual(study, DoGet(_REMOTE, '/instances/%s/study' % i) ['ID']) self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/studies/%s/split' % study, { 'KeepSource' : False })) # Neither "Instances", nor "Series" self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/studies/%s/split' % study, { 'KeepSource' : False, 'Instances' : [ ], 'Series' : [ ] })) # Empty "Instances" and "Series" self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/studies/%s/split' % study, { 'Instances' : [ 'nope' ], 'KeepSource' : False })) self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/studies/%s/split' % study, { 'Series' : [ 'nope' ], 'KeepSource' : False })) result = DoPost(_REMOTE, '/studies/%s/split' % study, { 'Instances' : [ knee1 ], 'KeepSource' : False }) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) instances = DoGet(_REMOTE, '/instances') self.assertEqual(2, len(instances)) self.assertFalse(knee1 in instances) self.assertTrue(knee2 in instances) instances.remove(knee2) self.assertEqual(series, DoGet(_REMOTE, '/instances/%s/series' % knee2) ['ID']) self.assertEqual(study, DoGet(_REMOTE, '/instances/%s/study' % knee2) ['ID']) self.assertNotEqual(series, DoGet(_REMOTE, '/instances/%s/series' % instances[0]) ['ID']) self.assertNotEqual(study, DoGet(_REMOTE, '/instances/%s/study' % instances[0]) ['ID']) self.assertEqual('1', DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) ['InstanceNumber']) def test_merge_instances(self): # New in Orthanc 1.9.4 knee = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') ['ID'] brainix = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') ['ID'] brainixStudy = DoGet(_REMOTE, '/instances/%s/study' % brainix) ['ID'] self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) instances = DoGet(_REMOTE, '/instances') self.assertEqual(2, len(instances)) self.assertTrue(brainix in instances) self.assertTrue(knee in instances) result = DoPost(_REMOTE, '/studies/%s/merge' % brainixStudy, { 'Resources' : [ knee ] }) self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) self.assertEqual(brainixStudy, DoGet(_REMOTE, '/studies')[0]) instances = DoGet(_REMOTE, '/instances') self.assertEqual(2, len(instances)) self.assertTrue(brainix in instances) self.assertFalse(knee in instances) def test_query_retrieve_format(self): # New in Orthanc 1.9.5 # https://groups.google.com/g/orthanc-users/c/1KC4d-0K8s0/m/hfYYz1-tAgAJ i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') ['ID'] study = DoGet(_REMOTE, '/instances/%s/study' % i) ['MainDicomTags']['StudyInstanceUID'] a = DoPost(_REMOTE, '/modalities/self/query', { 'Level' : 'Study', 'Query' : {} }) b = DoGet(_REMOTE, a['Path'] + '/answers') self.assertEqual(1, len(b)) self.assertEqual('0', b[0]) b = DoGet(_REMOTE, a['Path'] + '/answers?expand') self.assertEqual(1, len(b)) self.assertEqual(6, len(b[0])) self.assertEqual('ISO_IR 100', b[0]['0008,0005']['Value']) self.assertEqual('SpecificCharacterSet', b[0]['0008,0005']['Name']) self.assertEqual('A10003245599', b[0]['0008,0050']['Value']) self.assertEqual('AccessionNumber', b[0]['0008,0050']['Name']) self.assertEqual('STUDY', b[0]['0008,0052']['Value']) self.assertEqual('QueryRetrieveLevel', b[0]['0008,0052']['Name']) self.assertEqual('ORTHANC', b[0]['0008,0054']['Value']) self.assertEqual('RetrieveAETitle', b[0]['0008,0054']['Name']) self.assertEqual('887', b[0]['0010,0020']['Value']) self.assertEqual('PatientID', b[0]['0010,0020']['Name']) self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', b[0]['0020,000d']['Value']) self.assertEqual('StudyInstanceUID', b[0]['0020,000d']['Name']) for (key, value) in b[0].items(): self.assertEqual('String', value['Type']) self.assertEqual(json.dumps(b[0]), json.dumps(DoGet(_REMOTE, a['Path'] + '/answers/0/content'))) # What is below this point didn't work on Orthanc <= 1.9.3 b = DoGet(_REMOTE, a['Path'] + '/answers?expand&short') self.assertEqual(1, len(b)) self.assertEqual(6, len(b[0])) self.assertEqual('ISO_IR 100', b[0]['0008,0005']) self.assertEqual('A10003245599', b[0]['0008,0050']) self.assertEqual('STUDY', b[0]['0008,0052']) self.assertEqual('ORTHANC', b[0]['0008,0054']) self.assertEqual('887', b[0]['0010,0020']) self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', b[0]['0020,000d']) self.assertEqual(json.dumps(b[0]), json.dumps(DoGet(_REMOTE, a['Path'] + '/answers/0/content?short'))) b = DoGet(_REMOTE, a['Path'] + '/answers?expand&simplify') self.assertEqual(1, len(b)) self.assertEqual(6, len(b[0])) self.assertEqual('ISO_IR 100', b[0]['SpecificCharacterSet']) self.assertEqual('A10003245599', b[0]['AccessionNumber']) self.assertEqual('STUDY', b[0]['QueryRetrieveLevel']) self.assertEqual('ORTHANC', b[0]['RetrieveAETitle']) self.assertEqual('887', b[0]['PatientID']) self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', b[0]['StudyInstanceUID']) self.assertEqual(json.dumps(b[0]), json.dumps(DoGet(_REMOTE, a['Path'] + '/answers/0/content?simplify'))) b = DoPost(_REMOTE, '/queries/%s/retrieve' % a['ID'], {}) self.assertEqual('REST API', b['Description']) self.assertEqual('ORTHANC', b['LocalAet']) self.assertEqual('ORTHANC', b['RemoteAet']) self.assertEqual(1, len(b['Query'])) self.assertEqual(4, len(b['Query'][0])) self.assertEqual('A10003245599', b['Query'][0]['0008,0050']) self.assertEqual('STUDY', b['Query'][0]['0008,0052']) self.assertEqual('887', b['Query'][0]['0010,0020']) self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', b['Query'][0]['0020,000d']) # What is below this point didn't work on Orthanc <= 1.9.4 b = DoPost(_REMOTE, '/queries/%s/retrieve' % a['ID'], { 'Full' : True }) self.assertEqual('REST API', b['Description']) self.assertEqual('ORTHANC', b['LocalAet']) self.assertEqual('ORTHANC', b['RemoteAet']) self.assertEqual(1, len(b['Query'])) self.assertEqual(4, len(b['Query'][0])) self.assertEqual('A10003245599', b['Query'][0]['0008,0050']['Value']) self.assertEqual('STUDY', b['Query'][0]['0008,0052']['Value']) self.assertEqual('887', b['Query'][0]['0010,0020']['Value']) self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', b['Query'][0]['0020,000d']['Value']) self.assertEqual('AccessionNumber', b['Query'][0]['0008,0050']['Name']) self.assertEqual('QueryRetrieveLevel', b['Query'][0]['0008,0052']['Name']) self.assertEqual('PatientID', b['Query'][0]['0010,0020']['Name']) self.assertEqual('StudyInstanceUID', b['Query'][0]['0020,000d']['Name']) b = DoPost(_REMOTE, '/queries/%s/retrieve' % a['ID'], { 'Simplify' : True }) self.assertEqual('REST API', b['Description']) self.assertEqual('ORTHANC', b['LocalAet']) self.assertEqual('ORTHANC', b['RemoteAet']) self.assertEqual(1, len(b['Query'])) self.assertEqual(4, len(b['Query'][0])) self.assertEqual('A10003245599', b['Query'][0]['AccessionNumber']) self.assertEqual('STUDY', b['Query'][0]['QueryRetrieveLevel']) self.assertEqual('887', b['Query'][0]['PatientID']) self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', b['Query'][0]['StudyInstanceUID']) def test_anonymize_nested(self): # New in Orthanc 1.9.5 tags = { 'MappingResourceIdentificationSequence' : [ { # Test "DicomModification::RelationshipsVisitor::GetDefaultAction()" '0009,1002' : 'ABCD', # Private tag not registered in dictionary '0016,0071' : '-12', # "GPS Latitude" whose VR is DS in "removals_" '0034,0005' : '13', # VR is OB, and in "clearings_" (only in DCMTK 3.6.2) # Test "DicomModification::RelationshipsVisitor::VisitString()" 'StudyDescription' : 'Hello', # Removed 'StudyDate' : '20210705', # Cleared '0009,1001' : '-1234', # Private tag whose VR is DS # Test anonymization of nested sequences 'ReferencedStudySequence' : [ { 'PatientID' : 'HELLO' } ], # Non-anonymized tags 'CodeMeaning' : 'MEANING1', 'EquivalentCodeSequence' : [ { 'CodeMeaning' : 'MEANING2', } ], } ], } a = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Tags' : tags, 'PrivateCreator' : 'Lunit', })) ['ID'] study = DoGet(_REMOTE, '/instances/%s/study' % a) ['ID'] b = DoPost(_REMOTE, '/studies/%s/anonymize' % study, {}) ['ID'] c = DoGet(_REMOTE, '/studies/%s/instances' % b) self.assertEqual(1, len(c)) tags1 = DoGet(_REMOTE, '/instances/%s/tags?short' % a) tags2 = DoGet(_REMOTE, '/instances/%s/tags?short' % c[0]['ID']) # Only "StudyDate" must be present in # "MappingResourceIdentificationSequence" after anonymization self.assertEqual(1, len(tags1['0008,0124'])) self.assertEqual(1, len(tags2['0008,0124'])) self.assertEqual(9, len(tags1['0008,0124'][0])) self.assertEqual(3, len(tags2['0008,0124'][0])) self.assertEqual('', tags2['0008,0124'][0]['0008,0020']) self.assertEqual('MEANING1', tags2['0008,0124'][0]['0008,0104']) self.assertEqual('MEANING2', tags2['0008,0124'][0]['0008,0121'][0]['0008,0104']) self.assertTrue('0008,1110' in tags1['0008,0124'][0]) self.assertFalse('0008,1110' in tags2['0008,0124'][0]) def test_issue_200(self): # https://groups.google.com/g/orthanc-users/c/9CTLsL-JqDw/m/2I0xgyYHBAAJ # https://bugs.orthanc-server.com/show_bug.cgi?id=200 self.assertEqual(0, len(DoGet(_REMOTE, '/changes') ['Changes'])) self.assertEqual(0, len(DoGet(_REMOTE, '/changes?last') ['Changes'])) u = UploadInstance(_REMOTE, 'DummyCT.dcm') ['ID'] for change in DoGet(_REMOTE, '/changes') ['Changes']: self.assertTrue(re.match('[0-9]{8}T[0-9]{6}', change['Date'])) self.assertTrue(re.match('[0-9a-z]{8}-[0-9a-z]{8}-[0-9a-z]{8}-[0-9a-z]{8}', change['ID'])) last = DoGet(_REMOTE, '/changes?last') ['Changes'] self.assertEqual(1, len(last)) self.assertTrue(re.match('[0-9]{8}T[0-9]{6}', last[0]['Date'])) self.assertTrue(re.match('[0-9a-z]{8}-[0-9a-z]{8}-[0-9a-z]{8}-[0-9a-z]{8}', last[0]['ID'])) self.assertEqual(0, len(DoGet(_REMOTE, '/exports') ['Exports'])) self.assertEqual(0, len(DoGet(_REMOTE, '/exports?last') ['Exports'])) DoPost(_REMOTE, '/modalities/self/store', [ u ]) for change in DoGet(_REMOTE, '/exports') ['Exports']: self.assertTrue(re.match('[0-9]{8}T[0-9]{6}', change['Date'])) self.assertTrue(re.match('[0-9a-z]{8}-[0-9a-z]{8}-[0-9a-z]{8}-[0-9a-z]{8}', change['ID'])) last = DoGet(_REMOTE, '/exports?last') ['Exports'] self.assertEqual(1, len(last)) self.assertEqual('ozp00SjY2xG', last[0]['PatientID']) self.assertEqual('self', last[0]['RemoteModality']) self.assertEqual('Instance', last[0]['ResourceType']) self.assertEqual('/instances/%s' % last[0]['ID'], last[0]['Path']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', last[0]['StudyInstanceUID']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', last[0]['SeriesInstanceUID']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', last[0]['SOPInstanceUID']) self.assertTrue(re.match('[0-9]{8}T[0-9]{6}', last[0]['Date'])) self.assertTrue(re.match('[0-9a-z]{8}-[0-9a-z]{8}-[0-9a-z]{8}-[0-9a-z]{8}', last[0]['ID'])) def test_upload_dicomdir_archive(self): # This test fails on Orthanc <= 1.9.6 # https://groups.google.com/g/orthanc-users/c/sgBU89o4nhU/m/kbRAYiQUAAAJ # Create a ZIP archive with a DICOMDIR instance = UploadInstance(_REMOTE, 'DummyCT.dcm') ['ID'] study = DoGet(_REMOTE, '/instances/%s/study' % instance) ['ID'] media = DoGet(_REMOTE, '/studies/%s/media' % study) DoDelete(_REMOTE, '/instances/%s' % instance) result = DoPost(_REMOTE, '/instances', media) self.assertEqual(1, len(result)) self.assertEqual(instance, result[0]['ID']) self.assertEqual('Success', result[0]['Status']) def test_modify_keep_source(self): # https://groups.google.com/g/orthanc-users/c/1lvlBTs2WUY/m/HmYsc2CPBQAJ instance = UploadInstance(_REMOTE, 'DummyCT.dcm') ['ID'] study = DoGet(_REMOTE, '/instances/%s/study' % instance) ['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) a = DoPost(_REMOTE, '/studies/%s/anonymize' % study, {}) ['ID'] self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, '/studies/%s' % a) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) a = DoPost(_REMOTE, '/studies/%s/anonymize' % study, { 'KeepSource' : True }) ['ID'] self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, '/studies/%s' % a) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) a = DoPost(_REMOTE, '/studies/%s/anonymize' % study, { 'KeepSource' : False }) ['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, '/studies/%s' % a) self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) UploadInstance(_REMOTE, 'DummyCT.dcm') a = DoPost(_REMOTE, '/studies/%s/modify' % study, { 'Replace' : { } }) ['ID'] self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, '/studies/%s' % a) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) a = DoPost(_REMOTE, '/studies/%s/modify' % study, { 'KeepSource' : True }) ['ID'] self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, '/studies/%s' % a) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) a = DoPost(_REMOTE, '/studies/%s/modify' % study, { 'KeepSource' : False }) ['ID'] self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, '/studies/%s' % a) self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) def GetStudy(a): b = filter(lambda x: x['Type'] == 'Study', a['Resources']) if len(b) == 1: return b[0]['ID'] else: raise Exception() UploadInstance(_REMOTE, 'DummyCT.dcm') a = GetStudy(DoPost(_REMOTE, '/tools/bulk-anonymize', { 'Resources' : [ study ]})) self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, '/studies/%s' % a) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) a = GetStudy(DoPost(_REMOTE, '/tools/bulk-anonymize', { 'Resources' : [ study ], 'KeepSource' : True})) self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, '/studies/%s' % a) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) a = GetStudy(DoPost(_REMOTE, '/tools/bulk-anonymize', { 'Resources' : [ study ], 'KeepSource' : False})) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, '/studies/%s' % a) self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) UploadInstance(_REMOTE, 'DummyCT.dcm') a = GetStudy(DoPost(_REMOTE, '/tools/bulk-modify', { 'Resources' : [ study ], 'Replace' : { }})) self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, '/studies/%s' % a) # No more studies, because "bulk-modify" was not given a # level, so the modified instance belongs to the same study as # the original instance self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) # The following fails on Orthanc <= 1.9.6 because "Level" was # introduced in 1.9.7 UploadInstance(_REMOTE, 'DummyCT.dcm') a = GetStudy(DoPost(_REMOTE, '/tools/bulk-modify', { 'Level' : 'Study', 'Resources' : [ study ], 'Replace' : { }})) self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, '/studies/%s' % a) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) a = GetStudy(DoPost(_REMOTE, '/tools/bulk-modify', { 'Level' : 'Study', 'Resources' : [ study ], 'KeepSource' : True})) self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, '/studies/%s' % a) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) a = GetStudy(DoPost(_REMOTE, '/tools/bulk-modify', { 'Level' : 'Study', 'Resources' : [ study ], 'KeepSource' : False})) self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) DoDelete(_REMOTE, '/studies/%s' % a) self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) def test_multiframe_windowing(self): # Fixed in Orthanc 1.9.7 a = UploadInstance(_REMOTE, 'MultiframeWindowing.dcm') ['ID'] im = GetImage(_REMOTE, '/instances/%s/frames/0/rendered?window-center=127&window-width=256' % a) self.assertEqual(0x00, im.getpixel((0, 0))) self.assertEqual(0x10, im.getpixel((1, 0))) self.assertEqual(0x20, im.getpixel((0, 1))) self.assertEqual(0x30, im.getpixel((1, 1))) # Center the window on value "16 == 0x10", thus it has the # mid-level value (i.e. 127) im = GetImage(_REMOTE, '/instances/%s/frames/0/rendered?window-center=16&window-width=128' % a) self.assertEqual(127 - 2 * 16, im.getpixel((0, 0))) self.assertEqual(127, im.getpixel((1, 0))) self.assertEqual(127 + 2 * 16, im.getpixel((0, 1))) self.assertEqual(127 + 2 * 32, im.getpixel((1, 1))) # Window center and window width are burned in FrameVOILUTSequence for frame 0 im = GetImage(_REMOTE, '/instances/%s/frames/0/rendered' % a) self.assertEqual(127 - 2 * 16, im.getpixel((0, 0))) self.assertEqual(127, im.getpixel((1, 0))) self.assertEqual(127 + 2 * 16, im.getpixel((0, 1))) self.assertEqual(127 + 2 * 32, im.getpixel((1, 1))) im = GetImage(_REMOTE, '/instances/%s/frames/1/rendered?window-center=127&window-width=256' % a) self.assertEqual(100, im.getpixel((0, 0))) self.assertEqual(116, im.getpixel((1, 0))) self.assertEqual(132, im.getpixel((0, 1))) self.assertEqual(148, im.getpixel((1, 1))) im = GetImage(_REMOTE, '/instances/%s/frames/2/rendered?window-center=127&window-width=256' % a) self.assertEqual(0, im.getpixel((0, 0))) self.assertEqual(32, im.getpixel((1, 0))) self.assertEqual(64, im.getpixel((0, 1))) self.assertEqual(96, im.getpixel((1, 1))) im = GetImage(_REMOTE, '/instances/%s/frames/3/rendered?window-center=127&window-width=256' % a) self.assertEqual(100, im.getpixel((0, 0))) self.assertEqual(132, im.getpixel((1, 0))) self.assertEqual(164, im.getpixel((0, 1))) self.assertEqual(196, im.getpixel((1, 1))) im = GetImage(_REMOTE, '/instances/%s/frames/0/rendered?window-center=16&window-width=128' % a) self.assertEqual(127 - 2 * 16, im.getpixel((0, 0))) self.assertEqual(127, im.getpixel((1, 0))) self.assertEqual(127 + 2 * 16, im.getpixel((0, 1))) self.assertEqual(127 + 2 * 32, im.getpixel((1, 1))) def test_dicom_seg(self): # This test fails in Orthanc <= 1.9.7 a = UploadInstance(_REMOTE, 'DicomSeg.dcm') ['ID'] self.assertEqual(96, len(DoGet(_REMOTE, '/instances/%s/frames' % a))) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/96/preview' % a)) nonEmptyFrames = [ 11, 12, 13, 14, 15, 16, 39, 40, 42, 43, 44, 45, 46, 47, 48, 49, 75, 76, 77, 78, 79, 80, 81 ] for i in range(96): im = GetImage(_REMOTE, '/instances/%s/frames/%d/preview' % (a, i)) self.assertEqual('L', im.mode) self.assertEqual(256, im.size[0]) self.assertEqual(256, im.size[1]) e = im.getextrema() self.assertEqual(0, e[0]) if e[1] == 0: self.assertFalse(i in nonEmptyFrames) else: self.assertTrue(i in nonEmptyFrames) im1 = GetImage(_REMOTE, '/instances/%s/frames/44/preview' % a) # Generated by "dcm2pnm +F 45 DicomSeg.dcm DicomSeg-Frame45.pgm" im2 = Image.open(GetDatabasePath('DicomSeg-Frame45.pgm')) im2 = im2.point(lambda p: 255 if p == 128 else 0) self.assertTrue(ImageChops.difference(im1, im2).getbbox() is None) def test_numpy(self): # New in Orthanc 1.10.0 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') b = UploadInstance(_REMOTE, 'DicomSeg.dcm') ['ID'] d = UploadInstance(_REMOTE, 'Issue124.dcm') ['ID'] c = numpy.load(io.BytesIO(DoGet(_REMOTE, '/instances/%s/frames/0/numpy' % a))) self.assertFalse(isinstance(c, numpy.lib.npyio.NpzFile)) self.assertEqual(numpy.float32, c.dtype) self.assertEqual((288, 288, 1), c.shape) self.assertAlmostEqual(0, c.min()) self.assertAlmostEqual(536, c.max()) c = numpy.load(io.BytesIO(DoGet(_REMOTE, '/instances/%s/frames/0/numpy?rescale=0' % a))) self.assertFalse(isinstance(c, numpy.lib.npyio.NpzFile)) self.assertEqual(numpy.uint16, c.dtype) self.assertEqual((288, 288, 1), c.shape) self.assertEqual(0, c.min()) self.assertEqual(536, c.max()) c = numpy.load(io.BytesIO(DoGet(_REMOTE, '/instances/%s/numpy?rescale=1&compress=false' % a))) self.assertFalse(isinstance(c, numpy.lib.npyio.NpzFile)) self.assertEqual(numpy.float32, c.dtype) self.assertEqual((1, 288, 288, 1), c.shape) series = DoGet(_REMOTE, '/instances/%s/series' % a)['ID'] c = numpy.load(io.BytesIO(DoGet(_REMOTE, '/series/%s/numpy?rescale=true&compress=0' % series))) self.assertFalse(isinstance(c, numpy.lib.npyio.NpzFile)) self.assertEqual(numpy.float32, c.dtype) self.assertEqual((2, 288, 288, 1), c.shape) series = DoGet(_REMOTE, '/instances/%s/series' % a)['ID'] c = numpy.load(io.BytesIO(DoGet(_REMOTE, '/series/%s/numpy?rescale=1' % series))) self.assertFalse(isinstance(c, numpy.lib.npyio.NpzFile)) self.assertEqual(numpy.float32, c.dtype) self.assertEqual((2, 288, 288, 1), c.shape) c = numpy.load(io.BytesIO(DoGet(_REMOTE, '/instances/%s/numpy?compress' % a))) self.assertTrue(isinstance(c, numpy.lib.npyio.NpzFile)) self.assertEqual(1, len(c.files)) self.assertEqual(numpy.float32, c['arr_0'].dtype) self.assertEqual((1, 288, 288, 1), c['arr_0'].shape) c = numpy.load(io.BytesIO(DoGet(_REMOTE, '/instances/%s/frames/0/numpy' % b))) self.assertFalse(isinstance(c, numpy.lib.npyio.NpzFile)) self.assertEqual(numpy.float32, c.dtype) self.assertEqual((256, 256, 1), c.shape) self.assertAlmostEqual(0, c.min()) self.assertAlmostEqual(0, c.max()) c = numpy.load(io.BytesIO(DoGet(_REMOTE, '/instances/%s/frames/14/numpy' % b))) self.assertFalse(isinstance(c, numpy.lib.npyio.NpzFile)) self.assertEqual(numpy.float32, c.dtype) self.assertEqual((256, 256, 1), c.shape) self.assertAlmostEqual(0, c.min()) self.assertAlmostEqual(255, c.max()) c = numpy.load(io.BytesIO(DoGet(_REMOTE, '/instances/%s/numpy' % b))) self.assertFalse(isinstance(c, numpy.lib.npyio.NpzFile)) self.assertEqual(numpy.float32, c.dtype) self.assertEqual((96, 256, 256, 1), c.shape) series = DoGet(_REMOTE, '/instances/%s/series' % b)['ID'] c = numpy.load(io.BytesIO(DoGet(_REMOTE, '/series/%s/numpy' % series))) self.assertFalse(isinstance(c, numpy.lib.npyio.NpzFile)) self.assertEqual(numpy.float32, c.dtype) self.assertEqual((96, 256, 256, 1), c.shape) c = numpy.load(io.BytesIO(DoGet(_REMOTE, '/instances/%s/frames/0/numpy' % d))) self.assertFalse(isinstance(c, numpy.lib.npyio.NpzFile)) self.assertEqual(numpy.float32, c.dtype) self.assertEqual((512, 512, 1), c.shape) self.assertAlmostEqual(-3024, c.min()) # RescaleIntercept equals -1024 in this image self.assertAlmostEqual(2374, c.max()) c = numpy.load(io.BytesIO(DoGet(_REMOTE, '/instances/%s/frames/0/numpy?rescale=0' % d))) self.assertFalse(isinstance(c, numpy.lib.npyio.NpzFile)) self.assertEqual(numpy.int16, c.dtype) self.assertEqual((512, 512, 1), c.shape) self.assertEqual(-2000, c.min()) self.assertEqual(3398, c.max()) def test_find_patient_name_with_brackets_and_star(self): u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] modified = DoPost(_REMOTE, '/instances/%s/modify' % u, json.dumps({ "Replace" : { "PatientName" : "MyName[*]", "PatientID": "test_brackets" }, "Force": True }), 'application/json') m = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { 'PatientName' : 'MyName[*]' }}) self.assertEqual(1, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { 'PatientName' : 'MyName[*]' }}) self.assertEqual(1, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { 'PatientName' : 'MyName*' }}) self.assertEqual(1, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { 'PatientName' : 'MyName*' }}) self.assertEqual(1, len(a)) def test_find_patient_name_with_brackets_only(self): u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] modified = DoPost(_REMOTE, '/instances/%s/modify' % u, json.dumps({ "Replace" : { "PatientName" : "MyName2[]", "PatientID": "test_brackets2" }, "Force": True }), 'application/json') m = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { 'PatientName' : 'MyName2[*]' }}) self.assertEqual(1, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { 'PatientName' : 'MyName2[*]' }}) self.assertEqual(1, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { 'PatientName' : 'MyName2*' }}) self.assertEqual(1, len(a)) a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { 'PatientName' : 'MyName2*' }}) self.assertEqual(1, len(a)) def test_rest_find_requested_tags(self): if IsOrthancVersionAbove(_REMOTE, 1, 11, 1): # RequestedTags introduced in 1.11.0 but Sequences allowed since 1.11.1 # Upload instances for i in range(2): UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) # Patient level a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'CaseSensitive' : False, 'Query' : { 'PatientName' : 'BRAINIX' }, 'RequestedTags' : [ 'PatientName', 'PatientID', 'PatientSex', 'PatientBirthDate'], 'Expand': True }) self.assertEqual(1, len(a)) self.assertIn('PatientName', a[0]['RequestedTags']) self.assertIn('PatientID', a[0]['RequestedTags']) self.assertIn('PatientSex', a[0]['RequestedTags']) self.assertIn('PatientBirthDate', a[0]['RequestedTags']) self.assertEqual('BRAINIX', a[0]['RequestedTags']['PatientName']) self.assertEqual('5Yp0E', a[0]['RequestedTags']['PatientID']) self.assertEqual('0000', a[0]['RequestedTags']['PatientSex']) self.assertEqual('19490301', a[0]['RequestedTags']['PatientBirthDate']) # Study level, request patient tags too a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'CaseSensitive' : False, 'Query' : { 'PatientName' : 'BRAINIX' }, 'RequestedTags' : [ 'PatientName', 'StudyInstanceUID'], 'Expand': True }) self.assertEqual(1, len(a)) self.assertIn('PatientName', a[0]['RequestedTags']) self.assertIn('StudyInstanceUID', a[0]['RequestedTags']) self.assertEqual('BRAINIX', a[0]['RequestedTags']['PatientName']) self.assertEqual('2.16.840.1.113669.632.20.1211.10000357775', a[0]['RequestedTags']['StudyInstanceUID']) # Series level, request patient and study tags too a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'CaseSensitive' : False, 'Query' : { 'PatientName' : 'BRAINIX' }, 'RequestedTags' : [ 'PatientName', 'StudyInstanceUID', 'SeriesInstanceUID', 'RequestAttributesSequence'], 'Expand': True }) self.assertEqual(1, len(a)) self.assertIn('PatientName', a[0]['RequestedTags']) self.assertIn('StudyInstanceUID', a[0]['RequestedTags']) self.assertIn('SeriesInstanceUID', a[0]['RequestedTags']) self.assertIn('RequestAttributesSequence', a[0]['RequestedTags']) self.assertEqual('BRAINIX', a[0]['RequestedTags']['PatientName']) self.assertEqual('2.16.840.1.113669.632.20.1211.10000357775', a[0]['RequestedTags']['StudyInstanceUID']) self.assertEqual('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', a[0]['RequestedTags']['SeriesInstanceUID']) self.assertEqual('A10029316690', a[0]['RequestedTags']['RequestAttributesSequence'][0]['RequestedProcedureID']) # Instance level, request patient, study and series tags too, include tags that are not part of the main dicom tags a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'CaseSensitive' : False, 'Query' : { 'PatientName' : 'BRAINIX' }, 'RequestedTags' : [ 'PatientName', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'PhotometricInterpretation', 'RequestAttributesSequence'], 'Expand': True }) self.assertEqual(1, len(a)) self.assertIn('PatientName', a[0]['RequestedTags']) self.assertIn('StudyInstanceUID', a[0]['RequestedTags']) self.assertIn('SeriesInstanceUID', a[0]['RequestedTags']) self.assertIn('PhotometricInterpretation', a[0]['RequestedTags']) self.assertIn('RequestAttributesSequence', a[0]['RequestedTags']) self.assertEqual('BRAINIX', a[0]['RequestedTags']['PatientName']) self.assertEqual('2.16.840.1.113669.632.20.1211.10000357775', a[0]['RequestedTags']['StudyInstanceUID']) self.assertEqual('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', a[0]['RequestedTags']['SeriesInstanceUID']) self.assertEqual('MONOCHROME2', a[0]['RequestedTags']['PhotometricInterpretation']) self.assertEqual('A10029316690', a[0]['RequestedTags']['RequestAttributesSequence'][0]['RequestedProcedureID']) def test_rest_find_requested_tags_computed_tags(self): if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): # Upload instances for i in range(2): UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) # Patient level a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'CaseSensitive' : False, 'Query' : { 'PatientName' : 'BRAINIX' }, 'RequestedTags' : [ 'PatientName', 'NumberOfPatientRelatedStudies', 'NumberOfPatientRelatedSeries', 'NumberOfPatientRelatedInstances'], 'Expand': True }) self.assertEqual(1, len(a)) self.assertEqual('BRAINIX', a[0]['RequestedTags']['PatientName']) self.assertEqual('1', a[0]['RequestedTags']['NumberOfPatientRelatedStudies']) self.assertEqual('1', a[0]['RequestedTags']['NumberOfPatientRelatedSeries']) self.assertEqual('2', a[0]['RequestedTags']['NumberOfPatientRelatedInstances']) # Study level a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'CaseSensitive' : False, 'Query' : { 'PatientName' : 'BRAINIX' }, 'RequestedTags' : [ 'PatientName', 'StudyInstanceUID', 'ModalitiesInStudy', 'SOPClassesInStudy', 'NumberOfStudyRelatedInstances', 'NumberOfStudyRelatedSeries'], 'Expand': True }) self.assertEqual(1, len(a)) self.assertEqual('BRAINIX', a[0]['RequestedTags']['PatientName']) self.assertEqual('2.16.840.1.113669.632.20.1211.10000357775', a[0]['RequestedTags']['StudyInstanceUID']) self.assertEqual('MR', a[0]['RequestedTags']['ModalitiesInStudy']) self.assertEqual('1.2.840.10008.5.1.4.1.1.4', a[0]['RequestedTags']['SOPClassesInStudy']) self.assertEqual('2', a[0]['RequestedTags']['NumberOfStudyRelatedInstances']) self.assertEqual('1', a[0]['RequestedTags']['NumberOfStudyRelatedSeries']) # Series level a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'CaseSensitive' : False, 'Query' : { 'PatientName' : 'BRAINIX' }, 'RequestedTags' : [ 'PatientName', 'StudyInstanceUID', 'NumberOfSeriesRelatedInstances'], 'Expand': True }) self.assertEqual(1, len(a)) self.assertEqual('BRAINIX', a[0]['RequestedTags']['PatientName']) self.assertEqual('2.16.840.1.113669.632.20.1211.10000357775', a[0]['RequestedTags']['StudyInstanceUID']) self.assertEqual('2', a[0]['RequestedTags']['NumberOfSeriesRelatedInstances']) # Instance level a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'CaseSensitive' : False, 'Query' : { 'PatientName' : 'BRAINIX' }, 'RequestedTags' : [ 'PatientName', 'StudyInstanceUID', 'SOPInstanceUID', 'InstanceAvailability'], 'Expand': True }) self.assertEqual(2, len(a)) self.assertEqual('BRAINIX', a[0]['RequestedTags']['PatientName']) self.assertEqual('2.16.840.1.113669.632.20.1211.10000357775', a[0]['RequestedTags']['StudyInstanceUID']) self.assertEqual('ONLINE', a[0]['RequestedTags']['InstanceAvailability']) def test_list_resources_requested_tags(self): if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): instance = UploadInstance(_REMOTE, 'DummyCT.dcm') ['ID'] patient = DoGet(_REMOTE, '/instances/%s/patient' % instance) ['ID'] study = DoGet(_REMOTE, '/instances/%s/study' % instance) ['ID'] # list series and request tags that are not in the default main dicom tags a = DoGet(_REMOTE, '/studies/%s/series?expand&simplify&requestedTags=PatientName;Modality;SeriesInstanceUID;MRAcquisitionType' % study) self.assertEqual('2D', a[0]['RequestedTags']['MRAcquisitionType']) self.assertEqual('MR', a[0]['RequestedTags']['Modality']) self.assertEqual('KNIX', a[0]['RequestedTags']['PatientName']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', a[0]['RequestedTags']['SeriesInstanceUID']) # list studies and request patient and studies tags a = DoGet(_REMOTE, '/patients/%s/studies?expand&simplify&requestedTags=PatientName;StudyInstanceUID' % patient) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', a[0]['RequestedTags']['StudyInstanceUID']) self.assertEqual('KNIX', a[0]['RequestedTags']['PatientName']) # list instances and request patient, studies and series tags including tags that are not in main dicom tags a = DoGet(_REMOTE, '/patients/%s/instances?expand&simplify&requestedTags=PatientName;StudyInstanceUID;SeriesInstanceUID;SOPInstanceUID;Rows;Columns;InstanceAvailability' % patient) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', a[0]['RequestedTags']['StudyInstanceUID']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', a[0]['RequestedTags']['SeriesInstanceUID']) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a[0]['RequestedTags']['SOPInstanceUID']) self.assertEqual('KNIX', a[0]['RequestedTags']['PatientName']) self.assertEqual('512', a[0]['RequestedTags']['Rows']) self.assertEqual('512', a[0]['RequestedTags']['Columns']) self.assertEqual('ONLINE', a[0]['RequestedTags']['InstanceAvailability']) def test_list_resources_requested_tags_study_computed_tags(self): if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): instance = UploadInstance(_REMOTE, 'DummyCT.dcm') ['ID'] patient = DoGet(_REMOTE, '/instances/%s/patient' % instance) ['ID'] study = DoGet(_REMOTE, '/instances/%s/study' % instance) ['ID'] # list studies and request patient and studies tags, including ModalitiesInStudy a = DoGet(_REMOTE, '/patients/%s/studies?expand&simplify&requestedTags=PatientName;StudyInstanceUID;ModalitiesInStudy;SOPClassesInStudy;NumberOfStudyRelatedInstances;NumberOfStudyRelatedSeries' % patient) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', a[0]['RequestedTags']['StudyInstanceUID']) self.assertEqual('KNIX', a[0]['RequestedTags']['PatientName']) self.assertEqual('MR', a[0]['RequestedTags']['ModalitiesInStudy']) self.assertEqual('1.2.840.10008.5.1.4.1.1.4', a[0]['RequestedTags']['SOPClassesInStudy']) self.assertEqual('1', a[0]['RequestedTags']['NumberOfStudyRelatedInstances']) self.assertEqual('1', a[0]['RequestedTags']['NumberOfStudyRelatedSeries']) def test_list_resources_requested_tags_series_computed_tags(self): if IsOrthancVersionAbove(_REMOTE, 1, 11, 0): instance = UploadInstance(_REMOTE, 'DummyCT.dcm') ['ID'] patient = DoGet(_REMOTE, '/instances/%s/patient' % instance) ['ID'] study = DoGet(_REMOTE, '/instances/%s/study' % instance) ['ID'] # list studies and request patient and studies tags, including ModalitiesInStudy a = DoGet(_REMOTE, '/studies/%s/series?expand&simplify&requestedTags=PatientName;SeriesInstanceUID;NumberOfSeriesRelatedInstances' % study) self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', a[0]['RequestedTags']['SeriesInstanceUID']) self.assertEqual('KNIX', a[0]['RequestedTags']['PatientName']) self.assertEqual('1', a[0]['RequestedTags']['NumberOfSeriesRelatedInstances']) def test_dicomweb_jpeg2k_implicit(self): # This is a file encoded using 1.2.840.10008.1.2.4.90 transfer # syntax, in which most DICOM tags have the "UN" value # representation. Support introduced in Orthanc 1.10.1. # https://groups.google.com/g/orthanc-users/c/86fobx3ZyoM/m/KBG17un6AQAJ a = UploadInstance(_REMOTE, '2022-03-08-RicSmi.dcm') ['ID'] b = DoGet(_REMOTE, '/instances/%s/file' % a, headers = { 'Accept' : 'application/dicom+json' }) self.assertEqual(b['0020000D']['Value'][0], '1.2.276.0.7230010.3.1.2.2358427580.3460.1646695830.793') self.assertEqual(b['0020000E']['Value'][0], '1.2.276.0.7230010.3.1.3.2358427580.3460.1646695830.794') def test_create_png16RBGA(self): with open(GetDatabasePath('Png16RBGATest.png'), 'rb') as f: png = f.read() i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'PatientName' : 'Jodogne', 'Modality' : 'CT', 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', 'PixelData' : 'data:image/png;base64,' + base64.b64encode(png) })) self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) self.assertEqual((32, 32), png.size) png = GetImage(_REMOTE, '/instances/%s/rendered' % i['ID']) self.assertEqual((32, 32), png.size) j = DoGet(_REMOTE, i['Path']) self.assertEqual('Instance', j['Type']) self.assertEqual(j['ID'], i['ID']) def test_storescu_custom_host_ip_port(self): if IsOrthancVersionAbove(_REMOTE, 1, 11, 3): DropOrthanc(_LOCAL) DropOrthanc(_REMOTE) a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') # upload to self -> orthanctest shall not receive any content DoPost(_REMOTE, '/modalities/self/store', { 'Resources' : [ a['ID']] }) self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) # upload to self by overriding it with config from orthanctest -> orthanctest shall receive the content c = DoGet(_REMOTE, '/modalities/orthanctest/configuration') DoPost(_REMOTE, '/modalities/self/store', { 'LocalAet' : 'YOP', 'CalledAet' : c['AET'], 'Port' : c['Port'], 'Host' : c['Host'], 'Resources' : [ a['ID']] }) self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) DropOrthanc(_REMOTE) DropOrthanc(_LOCAL) def test_rle_planar_configuration(self): if IsOrthancVersionAbove(_REMOTE, 1, 11, 2): # https://groups.google.com/g/orthanc-users/c/CSVWfRasSR0/m/y1XDRXVnAgAJ a = UploadInstance(_REMOTE, '2022-11-14-RLEPlanarConfiguration.dcm') ['ID'] uri = '/instances/%s/preview' % a im = GetImage(_REMOTE, uri) self.assertEqual('RGB', im.mode) self.assertEqual(1475, im.size[0]) self.assertEqual(1475, im.size[1]) self.assertEqual('c684b0050dc2523041240bf2d26dc85e', ComputeMD5(DoGet(_REMOTE, uri))) if IsOrthancVersionAbove(_REMOTE, 1, 12, 1): a = UploadInstance(_REMOTE, '2023-04-21-RLEPlanarConfigurationYBR_FULL.dcm') ['ID'] uri = '/instances/%s/preview' % a im = GetImage(_REMOTE, uri) pprint.pprint(im) self.assertEqual('RGB', im.mode) self.assertEqual(1260, im.size[0]) self.assertEqual(910, im.size[1]) self.assertEqual('07a3ea7ea08d54362f744cc5945e8743', ComputeMD5(DoGet(_REMOTE, uri))) def test_rest_api_write_to_file_system(self): if IsOrthancVersionAbove(_REMOTE, 1, 12, 0): a = UploadInstance(_REMOTE, '2022-11-14-RLEPlanarConfiguration.dcm') ['ID'] self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances/%s/export' % a, '/tmp/test.dcm')) def test_overwrite_generates_stable_study(self): # This test makes sure there are no regression wrt StableStudy when uploading instances in Orthanc # The current behaviour (tested from 1.5.7 to 1.12.0) is # If you upload 2 instances with a delay > StableAge, you get 2 StableStudy events and they are both listed in /changes # If you upload twice the same instance with a delay > StableAge, you get 2 StableStudy events but only the last one is listed in /changes, the first one is deleted # If you upload an instance and a modified version of this instance with a delay > StableAge, you get 2 StableStudy events but only the last one is listed in /changes, the first one is deleted def GetAllStableStudyChangesIds(studyId, timeout): # try to be as fast as possible -> stop as soon as we've found a StableStudy event that appeared after we started monitoring fromSeq = DoGet(_REMOTE, '/changes')["Last"] endTime = time.time() + timeout newStableStudyFound = False while not newStableStudyFound and time.time() < endTime: time.sleep(0.1) changes = DoGet(_REMOTE, '/changes') stableStudyChangesIds = [] for change in changes["Changes"]: if change["ChangeType"] == "StableStudy" and studyId == change["ID"]: stableStudyChangesIds.append(change["Seq"]) if change["Seq"] > fromSeq: newStableStudyFound = True return stableStudyChangesIds if True: DropOrthanc(_REMOTE) upload1 = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') # StableAge is set to 1, expect a StableStudy within 4 seconds changes1 = GetAllStableStudyChangesIds(upload1["ParentStudy"], 4) self.assertEqual(1, len(changes1)) # upload the same instance again and check a new change has been generated with a new id, the first change has been deleted upload1b = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') changes1b = GetAllStableStudyChangesIds(upload1b["ParentStudy"], 4) self.assertEqual(1, len(changes1b)) self.assertNotEqual(changes1[0], changes1b[0]) if True: DropOrthanc(_REMOTE) upload1 = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') # StableAge is set to 1, expect a StableStudy within 4 seconds changes1 = GetAllStableStudyChangesIds(upload1["ParentStudy"], 4) self.assertEqual(1, len(changes1)) # reupload a modified instance in the same study and check a new change has been generated with a new id, the first change has been deleted modified = DoPost(_REMOTE, '/instances/%s/modify' % upload1["ID"], json.dumps({ "Replace" : { "InstitutionName" : "hello", "SOPInstanceUID": "1.2.840.113619.2.176.2025.1499492.7040.1171286241.705" }, "Force": True }), 'application/json') upload1b = DoPost(_REMOTE, '/instances', modified, 'application/dicom') changes1b = GetAllStableStudyChangesIds(upload1b["ParentStudy"], 4) self.assertEqual(upload1["ParentStudy"], upload1b["ParentStudy"]) self.assertEqual(1, len(changes1b)) self.assertNotEqual(changes1[0], changes1b[0]) if True: DropOrthanc(_REMOTE) upload1 = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') # StableAge is set to 1, expect a StableStudy within 4 seconds changes1 = GetAllStableStudyChangesIds(upload1["ParentStudy"], 4) self.assertEqual(1, len(changes1)) # upload a new instance in the same study and check a second StableStudy change has been generated with a new id upload2 = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') changes2 = GetAllStableStudyChangesIds(upload2["ParentStudy"], 4) self.assertEqual(upload1["ParentStudy"], upload2["ParentStudy"]) self.assertEqual(2, len(changes2)) self.assertEqual(changes1[0], changes2[0]) def test_labels(self): def CheckAllLabels(expected): actual = DoGet(_REMOTE, '/tools/labels') self.assertEqual(len(actual), len(expected)) for i in expected: self.assertTrue(i in actual) for i in actual: self.assertTrue(i in expected) if (IsOrthancVersionAbove(_REMOTE, 1, 12, 0) and DoGet(_REMOTE, '/system') ['HasLabels']): u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] patient = DoGet(_REMOTE, '/instances/%s/patient' % u) ['ID'] study = DoGet(_REMOTE, '/instances/%s/study' % u) ['ID'] series = DoGet(_REMOTE, '/instances/%s/series' % u) ['ID'] for base in [ '/instances/%s' % u, '/series/%s' % series, '/studies/%s' % study, '/patients/%s' % patient ]: # no tags by default self.assertEqual(0, len(DoGet(_REMOTE, base) ['Labels'])) CheckAllLabels([]) # 404 if requesting a tag that does apply for a resource self.assertRaises(Exception, lambda: DoGet(_REMOTE, '%s/labels/hello' % base)) # delete a non existing tag does not generate an error self.assertEqual('', DoDelete(_REMOTE, '%s/labels/hello' % base)) self.assertEqual(0, len(DoGet(_REMOTE, base) ['Labels'])) # Not an alphanumeric label -> 400 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '%s/labels/@' % base)) # add a tag self.assertEqual('', DoPut(_REMOTE, '%s/labels/hello' % base)) self.assertEqual(1, len(DoGet(_REMOTE, base) ['Labels'])) self.assertEqual('hello', DoGet(_REMOTE, base) ['Labels'][0]) CheckAllLabels([ 'hello' ]) # double tagging does not generate any error self.assertEqual('', DoPut(_REMOTE, '%s/labels/hello' % base)) self.assertEqual('', DoGet(_REMOTE, '%s/labels/hello' % base)) self.assertEqual(1, len(DoGet(_REMOTE, base) ['Labels'])) self.assertEqual('hello', DoGet(_REMOTE, base) ['Labels'][0]) # add a second tag self.assertEqual('', DoPut(_REMOTE, '%s/labels/world' % base)) self.assertEqual('', DoGet(_REMOTE, '%s/labels/world' % base)) self.assertEqual('', DoGet(_REMOTE, '%s/labels/hello' % base)) self.assertEqual(2, len(DoGet(_REMOTE, base) ['Labels'])) self.assertIn(DoGet(_REMOTE, base) ['Labels'][0], ['hello', 'world']) self.assertIn(DoGet(_REMOTE, base) ['Labels'][1], ['hello', 'world']) CheckAllLabels([ 'hello', 'world' ]) # delete the first tag self.assertEqual('', DoDelete(_REMOTE, '%s/labels/hello' % base)) self.assertEqual(1, len(DoGet(_REMOTE, base) ['Labels'])) self.assertEqual('world', DoGet(_REMOTE, base) ['Labels'][0]) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '%s/labels/hello' % base)) CheckAllLabels([ 'world' ]) # delete the second tag self.assertEqual('', DoDelete(_REMOTE, '%s/labels/world' % base)) self.assertEqual(0, len(DoGet(_REMOTE, base) ['Labels'])) self.assertRaises(Exception, lambda: DoGet(_REMOTE, '%s/labels/world' % base)) CheckAllLabels([ ]) # test all valid chars VALID = r'abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789_-' self.assertEqual('', DoPut(_REMOTE, '%s/labels/%s' % (base, VALID))) CheckAllLabels([ VALID ]) DoDelete(_REMOTE, '%s/labels/%s' % (base, VALID)) CheckAllLabels([ ]) else: print("Your database backend doesn't support labels") def test_find_labels(self): def Execute(labels, constraint, query = { }, level='Instance'): return DoPost(_REMOTE, '/tools/find', { 'Level' : level, 'Query' : query, 'Labels' : labels, 'LabelsConstraint' : constraint, }) if (IsOrthancVersionAbove(_REMOTE, 1, 12, 0) and DoGet(_REMOTE, '/system') ['HasLabels']): u = UploadInstance(_REMOTE, 'DummyCT.dcm') studyId = u["ParentStudy"] seriesId = u["ParentSeries"] patientId = u["ParentPatient"] u = u["ID"] self.assertEqual(1, len(Execute([ 'a' ], 'None'))) # The instance has no label self.assertEqual(1, len(Execute([], 'All'))) self.assertEqual(1, len(Execute([], 'Any'))) self.assertEqual(1, len(Execute([], 'None'))) self.assertEqual(0, len(Execute([ 'a' ], 'All'))) self.assertEqual(0, len(Execute([ 'a' ], 'Any'))) self.assertEqual(1, len(Execute([ 'a' ], 'None'))) self.assertEqual(0, len(Execute([ 'b' ], 'All'))) self.assertEqual(0, len(Execute([ 'b' ], 'Any'))) self.assertEqual(1, len(Execute([ 'b' ], 'None'))) self.assertEqual(0, len(Execute([ 'a', 'b' ], 'All'))) self.assertEqual(0, len(Execute([ 'a', 'b' ], 'Any'))) self.assertEqual(1, len(Execute([ 'a', 'b' ], 'None'))) DoPut(_REMOTE, '/instances/%s/labels/a' % u) # The instance has label "a" self.assertEqual(1, len(Execute([], 'All'))) self.assertEqual(1, len(Execute([], 'Any'))) self.assertEqual(1, len(Execute([], 'None'))) self.assertEqual(1, len(Execute([ 'a' ], 'All'))) self.assertEqual(1, len(Execute([ 'a' ], 'Any'))) self.assertEqual(0, len(Execute([ 'a' ], 'None'))) self.assertEqual(0, len(Execute([ 'b' ], 'All'))) self.assertEqual(0, len(Execute([ 'b' ], 'Any'))) self.assertEqual(1, len(Execute([ 'b' ], 'None'))) self.assertEqual(0, len(Execute([ 'a', 'b' ], 'All'))) self.assertEqual(1, len(Execute([ 'a', 'b' ], 'Any'))) self.assertEqual(0, len(Execute([ 'a', 'b' ], 'None'))) self.assertEqual(0, len(Execute([ 'a' ], 'All', { 'PatientID' : 'nope' }))) self.assertEqual(1, len(Execute([ 'a' ], 'All', { 'PatientID' : '' }))) self.assertEqual(0, len(Execute([ 'a' ], 'All', { 'StudyInstanceUID' : 'nope' }))) self.assertEqual(1, len(Execute([ 'a' ], 'All', { 'StudyInstanceUID' : '' }))) self.assertEqual(0, len(Execute([ 'a' ], 'All', { 'SeriesInstanceUID' : 'nope' }))) self.assertEqual(1, len(Execute([ 'a' ], 'All', { 'SeriesInstanceUID' : '' }))) self.assertEqual(0, len(Execute([ 'a' ], 'All', { 'SOPInstanceUID' : 'nope' }))) self.assertEqual(1, len(Execute([ 'a' ], 'All', { 'SOPInstanceUID' : '' }))) self.assertEqual(1, len(Execute([ 'a' ], 'All', { 'PatientID' : 'ozp00SjY2xG' }))) self.assertEqual(1, len(Execute([ 'a' ], 'All', { 'StudyInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' }))) self.assertEqual(1, len(Execute([ 'a' ], 'All', { 'SeriesInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394' }))) self.assertEqual(1, len(Execute([ 'a' ], 'All', { 'SOPInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' }))) self.assertEqual(1, len(Execute([ 'a' ], 'All', { 'PatientID' : 'ozp00SjY2xG', 'StudyInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', 'SeriesInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', 'SOPInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', }))) self.assertEqual(0, len(Execute([ 'b' ], 'All', { 'PatientID' : 'nope' }))) self.assertEqual(0, len(Execute([ 'b' ], 'All', { 'PatientID' : '' }))) self.assertEqual(0, len(Execute([ 'b' ], 'All', { 'StudyInstanceUID' : 'nope' }))) self.assertEqual(0, len(Execute([ 'b' ], 'All', { 'StudyInstanceUID' : '' }))) self.assertEqual(0, len(Execute([ 'b' ], 'All', { 'SeriesInstanceUID' : 'nope' }))) self.assertEqual(0, len(Execute([ 'b' ], 'All', { 'SeriesInstanceUID' : '' }))) self.assertEqual(0, len(Execute([ 'b' ], 'All', { 'SOPInstanceUID' : 'nope' }))) self.assertEqual(0, len(Execute([ 'b' ], 'All', { 'SOPInstanceUID' : '' }))) self.assertEqual(0, len(Execute([ 'b' ], 'All', { 'PatientID' : 'ozp00SjY2xG' }))) self.assertEqual(0, len(Execute([ 'b' ], 'All', { 'StudyInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' }))) self.assertEqual(0, len(Execute([ 'b' ], 'All', { 'SeriesInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394' }))) self.assertEqual(0, len(Execute([ 'b' ], 'All', { 'SOPInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' }))) self.assertEqual(0, len(Execute([ 'b' ], 'All', { 'PatientID' : 'ozp00SjY2xG', 'StudyInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', 'SeriesInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', 'SOPInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', }))) DoPut(_REMOTE, '/instances/%s/labels/b' % u) # The instance has labels "a" and "b" self.assertEqual(1, len(Execute([], 'All'))) self.assertEqual(1, len(Execute([], 'Any'))) self.assertEqual(1, len(Execute([], 'None'))) self.assertEqual(1, len(Execute([ 'a' ], 'All'))) self.assertEqual(1, len(Execute([ 'a' ], 'Any'))) self.assertEqual(0, len(Execute([ 'a' ], 'None'))) self.assertEqual(1, len(Execute([ 'b' ], 'All'))) self.assertEqual(1, len(Execute([ 'b' ], 'Any'))) self.assertEqual(0, len(Execute([ 'b' ], 'None'))) self.assertEqual(1, len(Execute([ 'a', 'b' ], 'All'))) self.assertEqual(1, len(Execute([ 'a', 'b' ], 'Any'))) self.assertEqual(0, len(Execute([ 'a', 'b' ], 'None'))) self.assertEqual(0, len(Execute([ 'b', 'c' ], 'All'))) self.assertEqual(1, len(Execute([ 'b', 'c' ], 'Any'))) self.assertEqual(0, len(Execute([ 'b', 'c' ], 'None'))) self.assertEqual(0, len(Execute([ 'c', 'd' ], 'All'))) self.assertEqual(0, len(Execute([ 'c', 'd' ], 'Any'))) self.assertEqual(1, len(Execute([ 'c', 'c' ], 'None'))) DoDelete(_REMOTE, '/instances/%s/labels/a' % u) # The instance has label "b" self.assertEqual(1, len(Execute([], 'All'))) self.assertEqual(1, len(Execute([], 'Any'))) self.assertEqual(1, len(Execute([], 'None'))) self.assertEqual(0, len(Execute([ 'a' ], 'All'))) self.assertEqual(0, len(Execute([ 'a' ], 'Any'))) self.assertEqual(1, len(Execute([ 'a' ], 'None'))) self.assertEqual(1, len(Execute([ 'b' ], 'All'))) self.assertEqual(1, len(Execute([ 'b' ], 'Any'))) self.assertEqual(0, len(Execute([ 'b' ], 'None'))) self.assertEqual(0, len(Execute([ 'a', 'b' ], 'All'))) self.assertEqual(1, len(Execute([ 'a', 'b' ], 'Any'))) self.assertEqual(0, len(Execute([ 'a', 'b' ], 'None'))) DoDelete(_REMOTE, '/instances/%s/labels/b' % u) # The instance has no more label self.assertEqual(1, len(Execute([], 'All'))) self.assertEqual(1, len(Execute([], 'Any'))) self.assertEqual(1, len(Execute([], 'None'))) self.assertEqual(0, len(Execute([ 'a' ], 'All'))) self.assertEqual(0, len(Execute([ 'a' ], 'Any'))) self.assertEqual(1, len(Execute([ 'a' ], 'None'))) self.assertEqual(0, len(Execute([ 'b' ], 'All'))) self.assertEqual(0, len(Execute([ 'b' ], 'Any'))) self.assertEqual(1, len(Execute([ 'b' ], 'None'))) self.assertEqual(0, len(Execute([ 'a', 'b' ], 'All'))) self.assertEqual(0, len(Execute([ 'a', 'b' ], 'Any'))) self.assertEqual(1, len(Execute([ 'a', 'b' ], 'None'))) # tests at series levels (make sure to test only with series levels and with multiple levels) DoPut(_REMOTE, '/series/%s/labels/b' % seriesId) self.assertEqual(1, len(Execute([ 'a' ], 'None', { 'SeriesInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394' }, 'Series'))) self.assertEqual(0, len(Execute([ 'a' ], 'Any', { 'SeriesInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394' }, 'Series'))) self.assertEqual(1, len(Execute([ 'b' ], 'Any', { 'SeriesInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394' }, 'Series'))) self.assertEqual(1, len(Execute([ 'b' ], 'All', { 'SeriesInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394' }, 'Series'))) self.assertEqual(1, len(Execute([ 'a' ], 'None', { 'PatientID' : 'ozp00SjY2xG', }, 'Series'))) self.assertEqual(0, len(Execute([ 'a' ], 'Any', { 'PatientID' : 'ozp00SjY2xG', }, 'Series'))) self.assertEqual(1, len(Execute([ 'b' ], 'Any', { 'PatientID' : 'ozp00SjY2xG', }, 'Series'))) self.assertEqual(1, len(Execute([ 'b' ], 'All', { 'PatientID' : 'ozp00SjY2xG', }, 'Series'))) # tests at study levels (make sure to test only with study levels and with multiple levels) DoPut(_REMOTE, '/studies/%s/labels/b' % studyId) self.assertEqual(1, len(Execute([ 'a' ], 'None', { 'StudyInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' }, 'Study'))) self.assertEqual(0, len(Execute([ 'a' ], 'Any', { 'StudyInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' }, 'Study'))) self.assertEqual(1, len(Execute([ 'b' ], 'Any', { 'StudyInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' }, 'Study'))) self.assertEqual(1, len(Execute([ 'b' ], 'All', { 'StudyInstanceUID' : '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' }, 'Study'))) self.assertEqual(1, len(Execute([ 'a' ], 'None', { 'PatientID' : 'ozp00SjY2xG', }, 'Study'))) self.assertEqual(0, len(Execute([ 'a' ], 'Any', { 'PatientID' : 'ozp00SjY2xG', }, 'Study'))) self.assertEqual(1, len(Execute([ 'b' ], 'Any', { 'PatientID' : 'ozp00SjY2xG', }, 'Study'))) self.assertEqual(1, len(Execute([ 'b' ], 'All', { 'PatientID' : 'ozp00SjY2xG', }, 'Study'))) # tests at patient levels DoPut(_REMOTE, '/patients/%s/labels/b' % patientId) self.assertEqual(1, len(Execute([ 'a' ], 'None', { 'PatientID' : 'ozp00SjY2xG', }, 'Patient'))) self.assertEqual(0, len(Execute([ 'a' ], 'Any', { 'PatientID' : 'ozp00SjY2xG', }, 'Patient'))) self.assertEqual(1, len(Execute([ 'b' ], 'Any', { 'PatientID' : 'ozp00SjY2xG', }, 'Patient'))) self.assertEqual(1, len(Execute([ 'b' ], 'All', { 'PatientID' : 'ozp00SjY2xG', }, 'Patient'))) else: print("Your database backend doesn't support labels") def test_numeric_metadata(self): if IsOrthancVersionAbove(_REMOTE, 1, 12, 0): instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] study = DoGet(_REMOTE, '/instances/%s/study' % instance)['ID'] m = DoGet(_REMOTE, '/studies/%s/metadata' % study) self.assertEqual(2, len(m)) self.assertTrue('LastUpdate' in m) self.assertTrue('MainDicomTagsSignature' in m) lastUpdate = DoGet(_REMOTE, '/studies/%s/metadata/%s' % (study, 'LastUpdate')) signature = DoGet(_REMOTE, '/studies/%s/metadata/%s' % (study, 'MainDicomTagsSignature')) m = DoGet(_REMOTE, '/studies/%s/metadata?numeric' % study) self.assertEqual(2, len(m)) self.assertTrue(7 in m) # MetadataType_LastUpdate self.assertTrue(15 in m) # MetadataType_MainDicomTagsSignature self.assertEqual(lastUpdate, DoGet(_REMOTE, '/studies/%s/metadata/%d' % (study, 7))) self.assertEqual(signature, DoGet(_REMOTE, '/studies/%s/metadata/%d' % (study, 15))) m = DoGet(_REMOTE, '/studies/%s/metadata?expand' % study) self.assertEqual(2, len(m)) self.assertTrue('LastUpdate' in m) self.assertTrue('MainDicomTagsSignature' in m) self.assertEqual(lastUpdate, m['LastUpdate']) self.assertEqual(signature, m['MainDicomTagsSignature']) m = DoGet(_REMOTE, '/studies/%s/metadata?expand&numeric' % study) self.assertEqual(2, len(m)) self.assertTrue('7' in m) self.assertTrue('15' in m) self.assertEqual(lastUpdate, m['7']) self.assertEqual(signature, m['15']) def test_expand(self): # test new expand options introduced in 1.12.2 if IsOrthancVersionAbove(_REMOTE, 1, 12, 2): r = UploadInstance(_REMOTE, 'DummyCT.dcm') instanceId = r['ID'] seriesId = r['ParentSeries'] studyId = r['ParentStudy'] self.assertEqual(DoGet(_REMOTE, '/instances?expand'), DoGet(_REMOTE, '/instances?expand=true')) self.assertEqual(DoGet(_REMOTE, '/instances'), DoGet(_REMOTE, '/instances?expand=false')) self.assertEqual(DoGet(_REMOTE, '/series?expand'), DoGet(_REMOTE, '/series?expand=true')) self.assertEqual(DoGet(_REMOTE, '/series'), DoGet(_REMOTE, '/series?expand=false')) self.assertEqual(DoGet(_REMOTE, '/studies?expand'), DoGet(_REMOTE, '/studies?expand=true')) self.assertEqual(DoGet(_REMOTE, '/studies'), DoGet(_REMOTE, '/studies?expand=false')) r = DoGet(_REMOTE, '/studies/%s/instances?expand=true' % studyId) self.assertEqual(1, len(r)) self.assertIn('MainDicomTags', r[0]) r = DoGet(_REMOTE, '/studies/%s/instances?expand=false' % studyId) self.assertEqual(1, len(r)) self.assertIn('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', r[0]) self.assertEqual(DoGet(_REMOTE, '/studies/%s/instances?expand' % studyId), DoGet(_REMOTE, '/studies/%s/instances?expand=true' % studyId)) self.assertEqual(DoGet(_REMOTE, '/studies/%s/instances' % studyId), DoGet(_REMOTE, '/studies/%s/instances?expand=true' % studyId)) r = DoGet(_REMOTE, '/studies/%s/series?expand=true' % studyId) self.assertEqual(1, len(r)) self.assertIn('MainDicomTags', r[0]) r = DoGet(_REMOTE, '/studies/%s/series?expand=false' % studyId) self.assertEqual(1, len(r)) self.assertIn('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', r[0]) self.assertEqual(DoGet(_REMOTE, '/studies/%s/series?expand' % studyId), DoGet(_REMOTE, '/studies/%s/series?expand=true' % studyId)) self.assertEqual(DoGet(_REMOTE, '/studies/%s/series' % studyId), DoGet(_REMOTE, '/studies/%s/series?expand=true' % studyId)) def test_add_attachment_to_non_existing_resource(self): if IsOrthancVersionAbove(_REMOTE, 1, 12, 1): # till 1.12.0, it returned a 200 (headers, body) = DoPutRaw(_REMOTE, '/instances/11111111-11111111-11111111-11111111-11111111/attachments/1025', 'hello') self.assertEqual('404', headers['status']) def test_delete_updates_parents_last_update_metadata(self): if IsOrthancVersionAbove(_REMOTE, 1, 12, 1): i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm') j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm') #instanceLastUpdate1 = DoGet(_REMOTE, '/instances/%s/metadata/LastUpdate' % i['ID']) seriesLastUpdate1 = DoGet(_REMOTE, '/series/%s/metadata/LastUpdate' % i['ParentSeries']) studyLastUpdate1 = DoGet(_REMOTE, '/studies/%s/metadata/LastUpdate' % i['ParentStudy']) patientLastUpdate1 = DoGet(_REMOTE, '/patients/%s/metadata/LastUpdate' % i['ParentPatient']) time.sleep(1.01) DoDelete(_REMOTE, '/instances/%s' % j['ID']) #instanceLastUpdate2 = DoGet(_REMOTE, '/instances/%s/metadata/LastUpdate' % i['ID']) seriesLastUpdate2 = DoGet(_REMOTE, '/series/%s/metadata/LastUpdate' % i['ParentSeries']) studyLastUpdate2 = DoGet(_REMOTE, '/studies/%s/metadata/LastUpdate' % i['ParentStudy']) patientLastUpdate2 = DoGet(_REMOTE, '/patients/%s/metadata/LastUpdate' % i['ParentPatient']) #self.assertEqual(instanceLastUpdate1, instanceLastUpdate2) self.assertNotEqual(seriesLastUpdate1, seriesLastUpdate2) self.assertNotEqual(studyLastUpdate1, studyLastUpdate2) self.assertNotEqual(patientLastUpdate1, patientLastUpdate2) def test_pixel_data_vr(self): def Check(path, hasPixelData, hasMetadata, expectedVR): i = UploadInstance(_REMOTE, path) ['ID'] m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) if hasMetadata: self.assertTrue('PixelDataVR' in m) self.assertEqual(expectedVR, m['PixelDataVR']) else: self.assertFalse('PixelDataVR' in m) if hasPixelData: self.assertTrue('PixelDataOffset' in m) j = DoGet(_REMOTE, '/instances/%s/file?expand' % i, headers = { 'Accept': 'application/dicom+json' }) self.assertEqual(expectedVR, j['7FE00010']['vr']) if IsOrthancVersionAbove(_REMOTE, 1, 12, 1): # File without pixel data Check('MarekLatin2.dcm', False, False, None) # Those files are badly formatted, and should be 'OB' # according to the DICOM standard => medata is present Check('Issue143.dcm', True, True, 'OW') # Little Endian Explicit, 8bpp Check('KarstenHilbertRF.dcm', True, True, 'OW') # Little Endian Explicit, 8bpp Check('PilatesArgenturGEUltrasoundOsiriX.dcm', True, True, 'OW') # Little Endian Explicit, 8bpp # Those files are formatted as expected Check('ColorTestMalaterre.dcm', True, False, 'OW') # Implicit Little Endian, 8bpp Check('Issue94.dcm', True, False, 'OW') # Implicit Little Endian, 16bpp Check('TransferSyntaxes/1.2.840.10008.1.2.1.dcm', True, False, 'OB') # Explicit Little Endian, 8bpp Check('Phenix/IM-0001-0001.dcm', True, False, 'OW') # Explicit Little Endian, 16bpp Check('TransferSyntaxes/1.2.840.10008.1.2.2.dcm', True, False, 'OB') # Explicit Big Endian, 8bpp Check('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm', True, False, 'OB') # JPEG Check('Knee/T1/IM-0001-0001.dcm', True, False, 'OB') # JPEG2k def test_encapsulate_stl(self): if IsOrthancVersionAbove(_REMOTE, 1, 12, 1): stl = b'Hello, world' i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Content' : 'data:model/stl;base64,%s' % base64.b64encode(stl).decode(), 'Force' : True, 'Tags' : { 'PatientName' : 'Jodogne' } })) ['ID'] tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) self.assertEqual('Jodogne', tags['PatientName']) self.assertEqual('M3D', tags['Modality']) self.assertEqual('model/stl', tags['MIMETypeOfEncapsulatedDocument']) self.assertEqual('1.2.840.10008.5.1.4.1.1.104.3', tags['SOPClassUID']) i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Content' : 'data:model/mtl;base64,%s' % base64.b64encode(stl).decode(), 'Tags' : {} })) ['ID'] tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) self.assertFalse('PatientName' in tags) self.assertEqual('M3D', tags['Modality']) self.assertEqual('model/mtl', tags['MIMETypeOfEncapsulatedDocument']) self.assertEqual('1.2.840.10008.5.1.4.1.1.104.5', tags['SOPClassUID']) i = DoPost(_REMOTE, '/tools/create-dicom', json.dumps({ 'Content' : 'data:model/obj;base64,%s' % base64.b64encode(stl).decode(), 'Tags' : {} })) ['ID'] tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) self.assertFalse('PatientName' in tags) self.assertEqual('M3D', tags['Modality']) self.assertEqual('model/obj', tags['MIMETypeOfEncapsulatedDocument']) self.assertEqual('1.2.840.10008.5.1.4.1.1.104.4', tags['SOPClassUID']) def test_error_codes_content_type(self): # from 1.12.2, check that a ContentType header is included in errors with an error description (ex: 404) (headers, body) = DoGetRaw(_REMOTE, '/rnm94%3Cscript%3Ealert(1)%3C/script%3Ejdtkc/explorer.html') self.assertEqual('404', headers['status']) if IsOrthancVersionAbove(_REMOTE, 1, 12, 2): self.assertEqual('text/plain', headers['content-type']) (headers, body) = DoPutRaw(_REMOTE, '/system', 'hello') self.assertEqual('405', headers['status']) # when there is no body, there is no content-type self.assertNotIn('content-type', headers) # responses with bodies contain x-content-type-options if IsOrthancVersionAbove(_REMOTE, 1, 12, 2): (headers, body) = DoGetRaw(_REMOTE, '/system') self.assertIn('nosniff', headers['x-content-type-options']) def test_modify_with_labels(self): if DoGet(_REMOTE, '/system')['ApiVersion'] < 23 or not DoGet(_REMOTE, '/system')['HasLabels']: return def UploadAndLabel(testId): DropOrthanc(_REMOTE) u = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') studyId = u["ParentStudy"] seriesId = u["ParentSeries"] patientId = u["ParentPatient"] instanceId = u["ID"] if testId == 2: # multi instance study UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') # add a label to the study before modification DoPut(_REMOTE, '/patients/%s/labels/label-patient' % patientId) DoPut(_REMOTE, '/studies/%s/labels/label-study' % studyId) DoPut(_REMOTE, '/series/%s/labels/label-series' % seriesId) DoPut(_REMOTE, '/instances/%s/labels/label-instance' % instanceId) originalPatient = DoGet(_REMOTE, '/patients/%s' % patientId) self.assertEqual(1, len(originalPatient["Labels"])) self.assertIn('label-patient', originalPatient["Labels"]) originalStudy = DoGet(_REMOTE, '/studies/%s' % studyId) self.assertEqual(1, len(originalStudy["Labels"])) self.assertIn('label-study', originalStudy["Labels"]) originalSeries = DoGet(_REMOTE, '/series/%s' % seriesId) self.assertEqual(1, len(originalSeries["Labels"])) self.assertIn('label-series', originalSeries["Labels"]) originalInstance = DoGet(_REMOTE, '/instances/%s' % instanceId) self.assertEqual(1, len(originalInstance["Labels"])) self.assertIn('label-instance', originalInstance["Labels"]) return originalPatient, originalStudy, originalSeries, originalInstance for testId in range(1, 2): #test with a single instance study and a multi instance study originalPatient, originalStudy, originalSeries, originalInstance = UploadAndLabel(testId) # modify a study in place with no label field in the payload (default behavior before 1.12.3) DoPost(_REMOTE, '/studies/%s/modify' % originalStudy['ID'], { 'Keep' : ['StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID'], 'Replace' : { 'PatientName': 'modified' }, 'Force': True }) # with no options, all resources lose their labels during the modification modifiedStudy = DoGet(_REMOTE, '/studies/%s' % originalStudy['ID']) self.assertEqual(0, len(modifiedStudy["Labels"])) self.assertEqual('modified', modifiedStudy["PatientMainDicomTags"]["PatientName"]) if IsOrthancVersionAbove(_REMOTE, 1, 12, 3) and DoGet(_REMOTE, '/system')['ApiVersion'] >= 23 and DoGet(_REMOTE, '/system')['HasLabels']: for testId in range(1, 2): #test with a single instance study and a multi instance study originalPatient, originalStudy, originalSeries, originalInstance = UploadAndLabel(testId) # modify a study in place with no label field in the payload (default behavior before 1.12.3) DoPost(_REMOTE, '/studies/%s/modify' % originalStudy['ID'], { 'Keep' : ['StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID'], 'Replace' : { 'PatientName': 'modified2' }, 'Force': True, 'KeepLabels': True }) # now, each resource level shall have kept its labels modifiedInstance = DoGet(_REMOTE, '/instances/%s' % originalInstance['ID']) self.assertEqual(1, len(modifiedInstance["Labels"])) self.assertIn('label-instance', modifiedInstance["Labels"]) modifiedSeries = DoGet(_REMOTE, '/series/%s' % originalSeries['ID']) self.assertEqual(1, len(modifiedSeries["Labels"])) self.assertIn('label-series', modifiedSeries["Labels"]) modifiedStudy = DoGet(_REMOTE, '/studies/%s' % originalStudy['ID']) self.assertEqual(1, len(modifiedStudy["Labels"])) self.assertIn('label-study', modifiedStudy["Labels"]) self.assertEqual('modified2', modifiedStudy["PatientMainDicomTags"]["PatientName"]) modifiedPatient = DoGet(_REMOTE, '/patients/%s' % originalPatient['ID']) self.assertEqual(1, len(modifiedPatient["Labels"])) self.assertIn('label-patient', modifiedPatient["Labels"])