Mercurial > hg > orthanc-tests

comparison Tests/Tests.py @ 117:d87bf4fbbf83

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merge
author amazy
date Thu, 13 Jul 2017 12:40:03 +0200
parents 4a196ebc7a4f 45ebfab035b7
children a954c535fef6
comparison
equal deleted inserted replaced
116:4a196ebc7a4f 117:d87bf4fbbf83
3193 modified = DoPost(_REMOTE, 3193 modified = DoPost(_REMOTE,
3194 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', 3194 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify',
3195 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"}}', 3195 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"}}',
3196 'application/json') 3196 'application/json')
3197 self.assertTrue('PatientID' in modified) 3197 self.assertTrue('PatientID' in modified)
3198 3198
3199
3200 def test_rest_find_limit(self):
3201 # Check the "Since" and "Limit" parameters in URI "/tools/find"
3202 # Related to issue 53: https://bitbucket.org/sjodogne/orthanc/issues/53
3203
3204 # Upload 6 instances
3205 brainix = []
3206 knee = []
3207 for i in range(2):
3208 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID'])
3209 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID'])
3210 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID'])
3211
3212 # Check using BRAINIX
3213 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance',
3214 'Query' : { 'PatientName' : 'B*' },
3215 'Limit' : 10 })
3216 self.assertEqual(4, len(a))
3217
3218 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance',
3219 'Query' : { 'PatientName' : 'B*' },
3220 'Limit' : 4 })
3221 self.assertEqual(4, len(a))
3222
3223 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance',
3224 'Query' : { 'PatientName' : 'B*' },
3225 'Since' : 2,
3226 'Limit' : 4 })
3227 self.assertEqual(2, len(a))
3228
3229 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance',
3230 'Query' : { 'PatientName' : 'B*' },
3231 'Limit' : 3 })
3232 self.assertEqual(3, len(a))
3233
3234 b = []
3235 for i in range(4):
3236 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance',
3237 'Query' : { 'PatientName' : 'B*' },
3238 'Limit' : 1,
3239 'Since' : i })
3240 self.assertEqual(1, len(a))
3241 b.append(a[0])
3242
3243 # Check whether the two sets are equal through symmetric difference
3244 self.assertEqual(0, len(set(b) ^ set(brainix)))
3245
3246 # Check using KNEE
3247 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance',
3248 'Query' : { 'PatientName' : 'K*' },
3249 'Limit' : 10 })
3250 self.assertEqual(2, len(a))
3251
3252 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance',
3253 'Query' : { 'PatientName' : 'K*' },
3254 'Limit' : 2 })
3255 self.assertEqual(2, len(a))
3256
3257 b = []
3258 for i in range(2):
3259 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance',
3260 'Query' : { 'PatientName' : 'K*' },
3261 'Limit' : 1,
3262 'Since' : i })
3263 self.assertEqual(1, len(a))
3264 b.append(a[0])
3265
3266 self.assertEqual(0, len(set(b) ^ set(knee)))
3267
3268
3269 def test_bitbucket_issue_46(self):
3270 # "PHI remaining after anonymization"
3271 # https://bitbucket.org/sjodogne/orthanc/issues/46
3272
3273 def GetAnonymizedTags(study, version):
3274 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study,
3275 { 'DicomVersion' : version },
3276 'application/json') ['ID']
3277 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized)
3278 self.assertEqual(1, len(a))
3279
3280 instance = a[0]['ID']
3281
3282 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance))
3283
3284 # Use a sample DICOM image that already contains the 0010,1060
3285 # (RequestingService) tag
3286 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm')
3287 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff'
3288
3289 # Add the 0032,1033 (Requesting Service) and the 0010,1060
3290 # (Patient's Mother's Birth Name) tags
3291 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy,
3292 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}',
3293 'application/json')['ID']
3294
3295 # Use Table E.1-1 from PS 3.15-2008
3296 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf
3297 (instance, tags) = GetAnonymizedTags(newStudy, "2008")
3298 self.assertTrue('0032,1033' in tags)
3299 self.assertTrue('0010,1060' in tags)
3300
3301 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1)
3302 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf
3303 (instance, tags) = GetAnonymizedTags(newStudy, "2017c")
3304 self.assertFalse('0032,1033' in tags)
3305 self.assertFalse('0010,1060' in tags)
3306
3307 t = {}
3308 for (key, value) in tags.iteritems():
3309 t[value['Name']] = value['Value']
3310
3311 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared
3312 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared
3313 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared
3314 self.assertFalse('SeriesDate' in t) # Type 3 tag => null
3315 self.assertFalse('SeriesTime' in t) # Type 3 tag => null
3316
3317 with tempfile.NamedTemporaryFile(delete = True) as f:
3318 # Run "dciodvfy" on the anonymized file to be sure it is still valid
3319 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance))
3320 f.flush()
3321 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ],
3322 stderr = subprocess.STDOUT).split('\n')