Mercurial > hg > orthanc-tests
comparison Tests/Tests.py @ 13:7b69a561f4d3
cont
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 18 Jun 2015 16:22:44 +0200 |
parents | 15c166240dfb |
children | ed9a9fe66002 |
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12:15c166240dfb | 13:7b69a561f4d3 |
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18 | 18 |
19 import unittest | 19 import unittest |
20 | 20 |
21 from PIL import ImageChops | 21 from PIL import ImageChops |
22 from Toolbox import * | 22 from Toolbox import * |
23 from xml.dom import minidom | |
23 | 24 |
24 _LOCAL = None | 25 _LOCAL = None |
25 _REMOTE = None | 26 _REMOTE = None |
26 | 27 |
27 | 28 |
736 self.assertEqual("RGB", im.mode) | 737 self.assertEqual("RGB", im.mode) |
737 self.assertEqual(41, im.size[0]) | 738 self.assertEqual(41, im.size[0]) |
738 self.assertEqual(41, im.size[1]) | 739 self.assertEqual(41, im.size[1]) |
739 | 740 |
740 # http://effbot.org/zone/pil-comparing-images.htm | 741 # http://effbot.org/zone/pil-comparing-images.htm |
741 truth = Image.open(os.path.join(os.path.dirname(__file__), '..', 'Database', 'ColorTestMalaterre.png')) | 742 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
742 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) | 743 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
743 | 744 |
744 | 745 |
745 def test_faking_ruby_put(self): | 746 def test_faking_ruby_put(self): |
746 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | 747 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
828 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | 829 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) |
829 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | 830 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) |
830 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | 831 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) |
831 self.assertEqual(1, len(m)) | 832 self.assertEqual(1, len(m)) |
832 self.assertTrue('LastUpdate' in m) | 833 self.assertTrue('LastUpdate' in m) |
834 | |
835 | |
836 def test_statistics(self): | |
837 # Upload 16 instances | |
838 for i in range(4): | |
839 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
840 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
841 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
842 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
843 | |
844 s = DoGet(_REMOTE, '/statistics') | |
845 self.assertEqual(16, s['CountInstances']) | |
846 self.assertEqual(2, s['CountPatients']) | |
847 self.assertEqual(2, s['CountStudies']) | |
848 self.assertEqual(4, s['CountSeries']) | |
849 d = int(s['TotalUncompressedSize']) | |
850 | |
851 e = 0 | |
852 for patient in DoGet(_REMOTE, '/patients'): | |
853 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
854 self.assertEqual(8, s['CountInstances']) | |
855 self.assertEqual(1, s['CountStudies']) | |
856 self.assertEqual(2, s['CountSeries']) | |
857 e += int(s['UncompressedSize']) | |
858 | |
859 for study in DoGet(_REMOTE, '/studies'): | |
860 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
861 self.assertEqual(8, s['CountInstances']) | |
862 self.assertEqual(2, s['CountSeries']) | |
863 e += int(s['UncompressedSize']) | |
864 | |
865 for series in DoGet(_REMOTE, '/series'): | |
866 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
867 self.assertEqual(4, s['CountInstances']) | |
868 e += int(s['UncompressedSize']) | |
869 | |
870 self.assertEqual(3 * d, e) | |
871 | |
872 | |
873 def test_custom_attachment(self): | |
874 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
875 patient = DoGet(_REMOTE, '/patients')[0] | |
876 instance = DoGet(_REMOTE, '/instances')[0] | |
877 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
878 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
879 | |
880 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
881 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
882 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
883 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
884 | |
885 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
886 hello = 'hellohellohellohellohellohellohellohellohello' | |
887 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
888 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
889 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
890 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
891 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
892 | |
893 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
894 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
895 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
896 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
897 size + | |
898 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
899 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
900 | |
901 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
902 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
903 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
904 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
905 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
906 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
907 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
908 | |
909 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
910 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
911 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
912 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
913 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
914 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
915 | |
916 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
917 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
918 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
919 | |
920 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
921 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
922 | |
923 | |
924 def test_incoming_storescu(self): | |
925 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
926 subprocess.check_call([ 'storescu', _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
927 GetDatabasePath('ColorTestImageJ.dcm') ]) | |
928 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
929 | |
930 | |
931 def test_incoming_findscu(self): | |
932 def CallFindScu(args): | |
933 p = subprocess.Popen([ 'findscu', '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], | |
934 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, | |
935 stderr=subprocess.PIPE) | |
936 return p.communicate()[1] | |
937 | |
938 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
939 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
940 | |
941 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
942 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
943 self.assertEqual(2, len(patientNames)) | |
944 self.assertTrue('Test Patient BG ' in patientNames) | |
945 self.assertTrue('Anonymized' in patientNames) | |
946 | |
947 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
948 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
949 self.assertEqual(2, len(series)) | |
950 self.assertTrue('20070208' in series) | |
951 self.assertTrue('19980312' in series) | |
952 | |
953 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) | |
954 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
955 self.assertEqual(1, len(series)) | |
956 | |
957 # Test the "CaseSentitivePN" flag (false by default) | |
958 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
959 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
960 self.assertEqual(1, len(series)) | |
961 | |
962 | |
963 @unittest.skip("This test fails, to fix") | |
964 def test_incoming_movescu(self): | |
965 def CallMoveScu(args): | |
966 subprocess.check_call([ 'movescu', | |
967 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
968 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
969 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
970 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, | |
971 stderr=subprocess.PIPE) | |
972 | |
973 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
974 | |
975 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
976 #CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) | |
977 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
978 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
979 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
980 | |
981 | |
982 def test_findscu(self): | |
983 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
984 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
985 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
986 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
987 | |
988 # Test the "find-patient" level | |
989 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
990 self.assertEqual(1, len(p)) | |
991 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
992 | |
993 # Test wildcards constraints. The "LO" value representation | |
994 # for PatientID is always case-sensitive, but the "PN" for | |
995 # PatientName might depend on the implementation: | |
996 # "GenerateConfigurationForTests.py" will force it to be case | |
997 # insensitive (which was the default until Orthanc 0.8.6). | |
998 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
999 self.assertEqual(1, len(p)) | |
1000 | |
1001 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1002 self.assertEqual(1, len(p)) | |
1003 | |
1004 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1005 self.assertEqual(1, len(p)) | |
1006 | |
1007 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1008 self.assertEqual(1, len(p)) | |
1009 | |
1010 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1011 self.assertEqual(0, len(p)) | |
1012 | |
1013 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1014 self.assertEqual(0, len(p)) | |
1015 | |
1016 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1017 self.assertEqual(0, len(p)) | |
1018 | |
1019 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1020 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1021 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1022 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1023 | |
1024 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1025 self.assertEqual(2, len(p)) | |
1026 | |
1027 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1028 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1029 self.assertEqual(1, len(s)) | |
1030 self.assertEqual('20070208', s[0]['StudyDate']) | |
1031 | |
1032 # Test range searches | |
1033 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1034 'StudyDate' : '-20070101' }) | |
1035 self.assertEqual(0, len(t)) | |
1036 | |
1037 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1038 'StudyDate' : '20090101-' }) | |
1039 self.assertEqual(0, len(t)) | |
1040 | |
1041 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1042 'StudyDate' : '20070101-' }) | |
1043 self.assertEqual(1, len(t)) | |
1044 | |
1045 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1046 'StudyDate' : '-20090101' }) | |
1047 self.assertEqual(1, len(t)) | |
1048 | |
1049 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1050 'StudyDate' : '20070207-20070207' }) | |
1051 self.assertEqual(0, len(t)) | |
1052 | |
1053 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1054 'StudyDate' : '20070208-20070208' }) | |
1055 self.assertEqual(1, len(t)) | |
1056 | |
1057 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1058 'StudyDate' : '20070209-20070209' }) | |
1059 self.assertEqual(0, len(t)) | |
1060 | |
1061 # Test the ModalitiesInStudy tag | |
1062 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1063 'PatientID' : 'B9uTHKOZ', | |
1064 'ModalitiesInStudy' : 'US' }) | |
1065 self.assertEqual(0, len(t)) | |
1066 | |
1067 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1068 'PatientID' : 'B9uTHKOZ', | |
1069 'ModalitiesInStudy' : 'CT' }) | |
1070 self.assertEqual(1, len(t)) | |
1071 | |
1072 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1073 'PatientID' : 'B9uTHKOZ', | |
1074 'ModalitiesInStudy' : 'US\\CT' }) | |
1075 self.assertEqual(1, len(t)) | |
1076 | |
1077 # Test the "find-series" level | |
1078 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1079 'PatientID' : 'B9uTHKOZ', | |
1080 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1081 self.assertEqual(1, len(t)) | |
1082 | |
1083 # Test "\" separator | |
1084 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1085 'PatientID' : 'B9uTHKOZ', | |
1086 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1087 'Modality' : 'MR\\CT\\US' }) | |
1088 self.assertEqual(1, len(t)) | |
1089 | |
1090 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1091 'PatientID' : 'B9uTHKOZ', | |
1092 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1093 'Modality' : 'MR\\US' }) | |
1094 self.assertEqual(0, len(t)) | |
1095 | |
1096 | |
1097 def test_update_modalities(self): | |
1098 try: | |
1099 DoDelete(_REMOTE, '/modalities/toto') | |
1100 except: | |
1101 pass | |
1102 try: | |
1103 DoDelete(_REMOTE, '/modalities/tata') | |
1104 except: | |
1105 pass | |
1106 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1107 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
1108 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) | |
1109 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) | |
1110 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) | |
1111 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
1112 DoDelete(_REMOTE, '/modalities/toto') | |
1113 DoDelete(_REMOTE, '/modalities/tata') | |
1114 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1115 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1116 | |
1117 | |
1118 def test_update_peers(self): | |
1119 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1120 try: | |
1121 DoDelete(_REMOTE, '/peers/toto') | |
1122 except: | |
1123 pass | |
1124 try: | |
1125 DoDelete(_REMOTE, '/peers/tata') | |
1126 except: | |
1127 pass | |
1128 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1129 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
1130 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
1131 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
1132 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1133 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1134 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
1135 DoDelete(_REMOTE, '/peers/toto') | |
1136 DoDelete(_REMOTE, '/peers/tata') | |
1137 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1138 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1139 | |
1140 | |
1141 def test_mesterhazy_modification(self): | |
1142 # When I modify a series ( eg. curl | |
1143 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1144 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1145 # series is added to a new Study, instead of the existing | |
1146 # Study. Fixed in Orthanc 0.7.5 | |
1147 | |
1148 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1149 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1150 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1151 | |
1152 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1153 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1154 | |
1155 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1156 | |
1157 | |
1158 def test_create(self): | |
1159 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1160 json.dumps({ | |
1161 'PatientName' : 'Jodogne', | |
1162 'Modality' : 'CT', | |
1163 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA | |
1164 })) | |
1165 | |
1166 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1167 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1168 | |
1169 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1170 self.assertEqual((5, 5), png.size) | |
1171 | |
1172 | |
1173 def test_pilates(self): | |
1174 # "SCU failed error when accessing orthanc with osirix" by | |
1175 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1176 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1177 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1178 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1179 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1180 | |
1181 | |
1182 def test_shared_tags(self): | |
1183 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1184 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1185 p = DoGet(_REMOTE, '/patients')[0] | |
1186 | |
1187 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1188 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1189 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1190 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1191 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1192 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1193 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1194 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1195 | |
1196 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1197 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1198 | |
1199 | |
1200 def test_modules(self): | |
1201 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1202 p = DoGet(_REMOTE, '/patients')[0] | |
1203 s = DoGet(_REMOTE, '/studies')[0] | |
1204 t = DoGet(_REMOTE, '/series')[0] | |
1205 | |
1206 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1207 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1208 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1209 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1210 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1211 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1212 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1213 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1214 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1215 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1216 | |
1217 | |
1218 def test_auto_directory(self): | |
1219 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1220 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1221 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
1222 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) | |
1223 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1224 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1225 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1226 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1227 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1228 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1229 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1230 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1231 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1232 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
1233 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) | |
1234 | |
1235 | |
1236 def test_echo(self): | |
1237 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
1238 | |
1239 | |
1240 def test_xml(self): | |
1241 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1242 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1243 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1244 self.assertEqual(len(items), len(json)) | |
1245 | |
1246 self.assertTrue('dicom-conformance' in json) | |
1247 | |
1248 ok = False | |
1249 for i in items: | |
1250 if i.childNodes[0].data == 'dicom-conformance': | |
1251 ok = True | |
1252 self.assertTrue(ok) | |
1253 | |
1254 | |
1255 def test_issue_16(self): | |
1256 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] | |
1257 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1258 self.assertEqual('0018,1063', t) | |
1259 | |
1260 | |
1261 def test_issue_22(self): | |
1262 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1263 a = [ | |
1264 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1265 "c69eee9a51eea3e8611e82e578897254", | |
1266 "315666be83e2d0111c77bc0996d84901", | |
1267 "3e27aa959d911172c48a1436443c72b1", | |
1268 "958642c9e7e9d232d3869faff546058c", | |
1269 "5e7ea8e3e4230cae707d143481355c59", | |
1270 "eda37f83558d858a596175aed8b2ad47", | |
1271 "486713bd2895c4ecbe0e97715ac7f80a", | |
1272 "091ef729eb169e67da8a0faa9631f9a8", | |
1273 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1274 "e2f39e85896fe58876654b94cd0b5013", | |
1275 "6fd2129e4950abbe1be053bc814d5da8", | |
1276 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1277 "746f808582156734dd6b6fdfd3a0b72c", | |
1278 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1279 "806b8b3e300c615099c11a5ec23465aa", | |
1280 "7c836aa298ba6eef96434579af631a11", | |
1281 "a0357dc9f4f72d73a885c33d7c287446", | |
1282 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1283 "8b114c526b8cbed6cad8a3248b7b480c", | |
1284 "44e6670f127e612a2b4aa60a0d207698", | |
1285 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1286 "95c796c2fa8f59018b15cf2987b1f79b", | |
1287 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1288 ] | |
1289 | |
1290 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1291 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1292 | |
1293 for i in range(len(a)): | |
1294 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1295 | |
1296 | |
1297 def test_issue_19(self): | |
1298 # This is an image with "YBR_FULL" photometric interpretation | |
1299 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm | |
1300 | |
1301 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
1302 i = DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview') | |
1303 | |
1304 # eb5d156c3594497f589158a6c6f3ca51 <=> Unsupported.png | |
1305 self.assertEqual('eb5d156c3594497f589158a6c6f3ca51', ComputeMD5(i)) | |
1306 | |
1307 | |
1308 def test_issue_37(self): | |
1309 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 | |
1310 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1311 | |
1312 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1313 'CaseSensitive' : True, | |
1314 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1315 self.assertEqual(1, len(a)) |