Mercurial > hg > orthanc-tests

comparison Plugins/WSI/Run.py @ 253:74c693e093ce

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 02 Aug 2019 17:44:25 +0200
parents 01db33301c3d
children 943166deebcb
comparison
equal deleted inserted replaced
252:01db33301c3d 253:74c693e093ce
90 ORTHANC = DefineOrthanc(server = args.server, 90 ORTHANC = DefineOrthanc(server = args.server,
91 username = args.username, 91 username = args.username,
92 password = args.password, 92 password = args.password,
93 restPort = args.rest) 93 restPort = args.rest)
94 94
95 def CallDicomizer(suffix): 95 def CallCommand(command):
96 prefix = [] 96 prefix = []
97 if args.valgrind: 97 if args.valgrind:
98 prefix = [ 'valgrind' ] 98 prefix = [ 'valgrind' ]
99 99
100 log = subprocess.check_output(prefix + [ args.dicomizer, 100 log = subprocess.check_output(prefix + command,
101 '--username=%s' % args.username,
102 '--password=%s' % args.password ] + suffix,
103 stderr=subprocess.STDOUT) 101 stderr=subprocess.STDOUT)
104 102
105 # If using valgrind, only print the lines from the log starting 103 # If using valgrind, only print the lines from the log starting
106 # with '==' (they contain the report from valgrind) 104 # with '==' (they contain the report from valgrind)
107 if args.valgrind: 105 if args.valgrind:
108 print('\n'.join(filter(lambda x: x.startswith('=='), log.splitlines()))) 106 print('\n'.join(filter(lambda x: x.startswith('=='), log.splitlines())))
107
108
109 def CallDicomizer(suffix):
110 CallCommand([ args.dicomizer,
111 '--username=%s' % args.username,
112 '--password=%s' % args.password ] + suffix)
113
114
115 def CallDicomToTiff(suffix):
116 CallCommand([ args.to_tiff ] + suffix)
117
118
119 def CallTiffInfoOnSeries(series):
120 with tempfile.NamedTemporaryFile(delete = False) as temp:
121 temp.close()
122 CallDicomToTiff([ series, temp.name ])
123 tiff = subprocess.check_output([ 'tiffinfo', temp.name ])
124 os.unlink(temp.name)
125
126 return tiff
109 127
110 128
111 class Orthanc(unittest.TestCase): 129 class Orthanc(unittest.TestCase):
112 def setUp(self): 130 def setUp(self):
113 if (sys.version_info >= (3, 0)): 131 if (sys.version_info >= (3, 0)):
145 self.assertEqual(512, pyramid['TileHeight']) 163 self.assertEqual(512, pyramid['TileHeight'])
146 self.assertEqual(512, pyramid['TotalWidth']) 164 self.assertEqual(512, pyramid['TotalWidth'])
147 self.assertEqual(512, pyramid['TotalHeight']) 165 self.assertEqual(512, pyramid['TotalHeight'])
148 self.assertEqual(1, pyramid['TilesCount'][0][0]) 166 self.assertEqual(1, pyramid['TilesCount'][0][0])
149 self.assertEqual(1, pyramid['TilesCount'][0][1]) 167 self.assertEqual(1, pyramid['TilesCount'][0][1])
168
169 tiff = CallTiffInfoOnSeries(s[0])
170 p = filter(lambda x: 'Photometric Interpretation' in x, tiff.splitlines())
171 self.assertEqual(1, len(p))
172 self.assertTrue('YCbCr' in p[0])
150 173
151 174
152 def test_grayscale_pyramid(self): 175 def test_grayscale_pyramid(self):
153 CallDicomizer([ GetDatabasePath('LenaGrayscale.png'), '--tile-width=64', '--tile-height=64' ]) 176 CallDicomizer([ GetDatabasePath('LenaGrayscale.png'), '--tile-width=64', '--tile-height=64' ])
154 177
191 self.assertEqual(4, pyramid['TilesCount'][1][1]) 214 self.assertEqual(4, pyramid['TilesCount'][1][1])
192 self.assertEqual(2, pyramid['TilesCount'][2][0]) 215 self.assertEqual(2, pyramid['TilesCount'][2][0])
193 self.assertEqual(2, pyramid['TilesCount'][2][1]) 216 self.assertEqual(2, pyramid['TilesCount'][2][1])
194 self.assertEqual(1, pyramid['TilesCount'][3][0]) 217 self.assertEqual(1, pyramid['TilesCount'][3][0])
195 self.assertEqual(1, pyramid['TilesCount'][3][1]) 218 self.assertEqual(1, pyramid['TilesCount'][3][1])
219
220 tiff = CallTiffInfoOnSeries(s[0])
221 p = filter(lambda x: 'Photometric Interpretation' in x, tiff.splitlines())
222 self.assertEqual(4, len(p))
223 for j in range(4):
224 self.assertTrue('min-is-black' in p[j])
225
226
227 def test_import_tiff_grayscale(self):
228 CallDicomizer([ GetDatabasePath('WSI/LenaGrayscaleJpeg.tiff') ])
229
230 s = DoGet(ORTHANC, '/series')
231 self.assertEqual(1, len(s))
232
233 pyramid = DoGet(ORTHANC, '/wsi/pyramids/%s' % s[0])
234 self.assertEqual(4, len(pyramid['Resolutions']))
235
236 tiff = CallTiffInfoOnSeries(s[0])
237 p = filter(lambda x: 'Photometric Interpretation' in x, tiff.splitlines())
238 self.assertEqual(4, len(p))
239 for j in range(4):
240 self.assertTrue('min-is-black' in p[j])
241
242
243 def test_import_tiff_ycbcr(self):
244 CallDicomizer([ GetDatabasePath('WSI/LenaColorJpegYCbCr.tiff') ])
245
246 s = DoGet(ORTHANC, '/series')
247 self.assertEqual(1, len(s))
248
249 pyramid = DoGet(ORTHANC, '/wsi/pyramids/%s' % s[0])
250 self.assertEqual(4, len(pyramid['Resolutions']))
251
252 tiff = CallTiffInfoOnSeries(s[0])
253 p = filter(lambda x: 'Photometric Interpretation' in x, tiff.splitlines())
254 self.assertEqual(4, len(p))
255 for j in range(4):
256 self.assertTrue('YCbCr' in p[j])
257
258
259 def test_import_tiff_rgb(self):
260 CallDicomizer([ GetDatabasePath('WSI/LenaColorJpegRGB.tiff') ])
261
262 s = DoGet(ORTHANC, '/series')
263 self.assertEqual(1, len(s))
264
265 pyramid = DoGet(ORTHANC, '/wsi/pyramids/%s' % s[0])
266 self.assertEqual(4, len(pyramid['Resolutions']))
267
268 tiff = CallTiffInfoOnSeries(s[0])
269 p = filter(lambda x: 'Photometric Interpretation' in x, tiff.splitlines())
270 self.assertEqual(4, len(p))
271 for j in range(4):
272 self.assertTrue('RGB' in p[j])
273
196 274
197 try: 275 try:
198 print('\nStarting the tests...') 276 print('\nStarting the tests...')
199 unittest.main(argv = [ sys.argv[0] ] + args.options) 277 unittest.main(argv = [ sys.argv[0] ] + args.options)
200 278