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comparison Tests/Tests.py @ 115:45ebfab035b7

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test_bitbucket_issue_46
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 12 Jul 2017 22:10:00 +0200
parents 3e5934363e76
children d87bf4fbbf83
comparison
equal deleted inserted replaced
114:a6019560272f 115:45ebfab035b7
3260 'Since' : i }) 3260 'Since' : i })
3261 self.assertEqual(1, len(a)) 3261 self.assertEqual(1, len(a))
3262 b.append(a[0]) 3262 b.append(a[0])
3263 3263
3264 self.assertEqual(0, len(set(b) ^ set(knee))) 3264 self.assertEqual(0, len(set(b) ^ set(knee)))
3265
3266
3267 def test_bitbucket_issue_46(self):
3268 # "PHI remaining after anonymization"
3269 # https://bitbucket.org/sjodogne/orthanc/issues/46
3270
3271 def GetAnonymizedTags(study, version):
3272 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study,
3273 { 'DicomVersion' : version },
3274 'application/json') ['ID']
3275 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized)
3276 self.assertEqual(1, len(a))
3277
3278 instance = a[0]['ID']
3279
3280 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance))
3281
3282 # Use a sample DICOM image that already contains the 0010,1060
3283 # (RequestingService) tag
3284 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm')
3285 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff'
3286
3287 # Add the 0032,1033 (Requesting Service) and the 0010,1060
3288 # (Patient's Mother's Birth Name) tags
3289 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy,
3290 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}',
3291 'application/json')['ID']
3292
3293 # Use Table E.1-1 from PS 3.15-2008
3294 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf
3295 (instance, tags) = GetAnonymizedTags(newStudy, "2008")
3296 self.assertTrue('0032,1033' in tags)
3297 self.assertTrue('0010,1060' in tags)
3298
3299 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1)
3300 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf
3301 (instance, tags) = GetAnonymizedTags(newStudy, "2017c")
3302 self.assertFalse('0032,1033' in tags)
3303 self.assertFalse('0010,1060' in tags)
3304
3305 t = {}
3306 for (key, value) in tags.iteritems():
3307 t[value['Name']] = value['Value']
3308
3309 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared
3310 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared
3311 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared
3312 self.assertFalse('SeriesDate' in t) # Type 3 tag => null
3313 self.assertFalse('SeriesTime' in t) # Type 3 tag => null
3314
3315 with tempfile.NamedTemporaryFile(delete = True) as f:
3316 # Run "dciodvfy" on the anonymized file to be sure it is still valid
3317 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance))
3318 f.flush()
3319 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ],
3320 stderr = subprocess.STDOUT).split('\n')