Mercurial > hg > orthanc-tests

annotate Plugins/CGet/Run.py @ 661:763e2ccbd0df default tip

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added test_computed_tags
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 04 Jul 2024 18:03:48 +0200
parents 5d7b6e43ab7d
children
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ec657d1a62a6 fix compatibility with python3
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1 #!/usr/bin/python3
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2
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3 # Orthanc - A Lightweight, RESTful DICOM Store
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4 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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5 # Department, University Hospital of Liege, Belgium
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6 # Copyright (C) 2017-2023 Osimis S.A., Belgium
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7 # Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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8 # Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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9 #
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10 # This program is free software: you can redistribute it and/or
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11 # modify it under the terms of the GNU General Public License as
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12 # published by the Free Software Foundation, either version 3 of the
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13 # License, or (at your option) any later version.
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14 #
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15 # This program is distributed in the hope that it will be useful, but
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16 # WITHOUT ANY WARRANTY; without even the implied warranty of
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17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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18 # General Public License for more details.
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19 #
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20 # You should have received a copy of the GNU General Public License
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21 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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22
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23
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24
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25 import argparse
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26 import os
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27 import pprint
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28 import re
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29 import sys
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30 import unittest
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31
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32 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests'))
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33 from Toolbox import *
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34
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35
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36 ##
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37 ## Parse the command-line arguments
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38 ##
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39
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08fac54c8555 CheckDicomTls.py
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40 parser = argparse.ArgumentParser(description = 'Run the integration tests for the C-GET SCP of Orthanc.')
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41
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42 parser.add_argument('--server',
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43 default = 'localhost',
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44 help = 'Address of the Orthanc server to test')
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45 parser.add_argument('--aet',
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46 default = 'ORTHANC',
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47 help = 'AET of the Orthanc instance to test')
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48 parser.add_argument('--dicom',
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49 type = int,
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50 default = 4242,
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51 help = 'DICOM port of the Orthanc instance to test')
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52 parser.add_argument('--rest',
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53 type = int,
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54 default = 8042,
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55 help = 'Port to the REST API')
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56 parser.add_argument('--username',
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57 default = 'alice',
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58 help = 'Username to the REST API')
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59 parser.add_argument('--password',
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60 default = 'orthanctest',
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61 help = 'Password to the REST API')
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62 parser.add_argument('--force', help = 'Do not warn the user',
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63 action = 'store_true')
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64 parser.add_argument('options', metavar = 'N', nargs = '*',
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65 help='Arguments to Python unittest')
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66
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67 args = parser.parse_args()
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68
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69
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70 ##
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71 ## Configure the testing context
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72 ##
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73
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74 if not args.force:
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75 print("""
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76 WARNING: This test will remove all the content of your
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77 Orthanc instance running on %s!
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78
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79 Are you sure ["yes" to go on]?""" % args.server)
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80
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81 if sys.stdin.readline().strip() != 'yes':
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82 print('Aborting...')
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83 exit(0)
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84
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85
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86 ORTHANC = DefineOrthanc(server = args.server,
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87 username = args.username,
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88 password = args.password,
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89 restPort = args.rest,
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90 aet = args.aet,
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91 dicomPort = args.dicom)
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92
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93
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94 ##
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95 ## pydicom toolbox
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96 ##
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97
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98 from pydicom.dataset import Dataset
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99 from pynetdicom import (
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100 AE,
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101 evt,
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102 build_role,
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103 debug_logger,
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104 )
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105 from pynetdicom.sop_class import *
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106
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107 def ExecuteCGet(orthanc, dataset, sopClass, callback):
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108 handlers = [(evt.EVT_C_STORE, callback)]
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109
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110 ae = AE(ae_title = 'ORTHANCTEST')
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111
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112 ae.add_requested_context(PatientRootQueryRetrieveInformationModelGet)
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113 ae.add_requested_context(sopClass)
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114 role = build_role(sopClass, scp_role = True, scu_role = True)
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115
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116 assoc = ae.associate(orthanc['Server'], orthanc['DicomPort'],
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117 ext_neg = [role], evt_handlers = handlers)
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118
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119 if assoc.is_established:
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120 responses = assoc.send_c_get(
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121 dataset,
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122 PatientRootQueryRetrieveInformationModelGet,
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123 msg_id = 9999,
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124 )
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125
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126 # Only report the result of the last sub-operation
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127 last = None
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128
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129 for (result, identifier) in responses:
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130 if result:
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131 last = result
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132 else:
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133 assoc.release()
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134 raise Exception('Connection timed out, was aborted or received invalid response')
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135
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136 assoc.release()
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137 return last
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138 else:
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139 raise Exception('Association rejected, aborted or never connected')
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140
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141
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142
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143
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144
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145 ##
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146 ## The tests
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147 ##
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148 ## IMPORTANT RESOURCES:
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149 ## http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.3.html#table_C.4-3
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150 ## http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.3.3.html
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151 ##
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152
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153
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154 def DefaultCallback(event):
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155 to_match = PatientRootQueryRetrieveInformationModelGet
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156 cxs = [cx for cx in event.assoc.accepted_contexts if cx.abstract_syntax == to_match]
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157 if len(cxs) != 1:
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158 raise Exception()
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159 else:
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160 return 0x0000
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161
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162
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163
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164 class Orthanc(unittest.TestCase):
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165 def setUp(self):
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166 if (sys.version_info >= (3, 0)):
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167 # Remove annoying warnings about unclosed socket in Python 3
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168 import warnings
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169 warnings.simplefilter('ignore', ResourceWarning)
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170
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171 DropOrthanc(ORTHANC)
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172
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173
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174 def test_success(self):
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175 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm')
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176 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm')
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177
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178 dataset = Dataset()
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179 dataset.QueryRetrieveLevel = 'STUDY'
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180 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775'
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181
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182 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, DefaultCallback)
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183
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184 self.assertEqual(0x0000, result[0x00000900].value) # Status - Success
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185 self.assertEqual(2, result[0x00001021].value) # Completed sub-operations
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186 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations
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187 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations
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188
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189 # "Warning, Failure, or Success shall not contain the Number
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190 # of Remaining Sub-operations Attribute."
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191 self.assertFalse(0x00001020 in result) # Remaining sub-operations
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192
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193
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194 def test_some_failure(self):
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195 # Failure in 1 on 2 images
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196 def Callback(event):
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197 Callback.count += 1
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198
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199 if Callback.count == 1:
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200 return 0xA702 # Refused: Out of resources - Unable to perform sub-operations
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201 elif Callback.count == 2:
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202 return 0x0000
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203 else:
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204 raise Exception('')
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205
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206 Callback.count = 0 # Static variable of function "Callback"
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207
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208 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm')
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209 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0002.dcm')
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210
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211 dataset = Dataset()
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212 dataset.QueryRetrieveLevel = 'STUDY'
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213 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775'
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214
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215 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback)
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216
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217 # Fixed in Orthanc 1.8.1. "From what I read from the DICOM
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218 # standard the C-GET should at least return a warning
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219 # (0xB000), see C.4.3.1.4 Status as one or more sub-operations
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220 # failed."
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221 # https://groups.google.com/g/orthanc-users/c/tS826iEzHb0/m/KzHZk61tAgAJ
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222 # https://github.com/pydicom/pynetdicom/issues/552#issuecomment-712477451
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223
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224 self.assertEqual(0xB000, result[0x00000900].value) # Status - One or more Failures or Warnings
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225 self.assertEqual(1, result[0x00001021].value) # Completed sub-operations
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226 self.assertEqual(1, result[0x00001022].value) # Failed sub-operations
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227 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations
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228
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229 # "Warning, Failure, or Success shall not contain the Number
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230 # of Remaining Sub-operations Attribute."
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231 self.assertFalse(0x00001020 in result) # Remaining sub-operations
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232
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233
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234 def test_all_failure(self):
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235 def Callback(event):
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236 return 0xA702 # Refused: Out of resources - Unable to perform sub-operations
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237
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238 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm')
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239 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0002.dcm')
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240
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241 dataset = Dataset()
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242 dataset.QueryRetrieveLevel = 'STUDY'
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243 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775'
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244
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245 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback)
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246
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247 # Must return "Failure or Refused if all sub-operations were unsuccessful"
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248 # http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.3.3.html
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249
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250 self.assertEqual(0xA702, result[0x00000900].value) # Status - Unable to perform sub-operations
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251 self.assertEqual(0, result[0x00001021].value) # Completed sub-operations
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252 self.assertEqual(2, result[0x00001022].value) # Failed sub-operations
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253 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations
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254
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255 # "Warning, Failure, or Success shall not contain the Number
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256 # of Remaining Sub-operations Attribute."
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257 self.assertFalse(0x00001020 in result) # Remaining sub-operations
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258
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259
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260 def test_warning(self):
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261 def Callback(event):
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262 return 0xB000 # Sub-operations Complete - One or more Failures or Warnings
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263
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264 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm')
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265
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266 dataset = Dataset()
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267 dataset.QueryRetrieveLevel = 'STUDY'
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268 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775'
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269
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270 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback)
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271
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272 self.assertEqual(0xB000, result[0x00000900].value) # Status - One or more Failures or Warnings
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273 self.assertEqual(0, result[0x00001021].value) # Completed sub-operations
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274 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations
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275 self.assertEqual(1, result[0x00001023].value) # Warning sub-operations
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276
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277 # "Warning, Failure, or Success shall not contain the Number
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278 # of Remaining Sub-operations Attribute."
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279 self.assertFalse(0x00001020 in result) # Remaining sub-operations
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280
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281
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282 def test_missing(self):
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283 dataset = Dataset()
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284 dataset.QueryRetrieveLevel = 'STUDY'
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285 dataset.StudyInstanceUID = 'nope'
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286
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287 result = ExecuteCGet(ORTHANC, dataset, UltrasoundImageStorage, DefaultCallback)
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288
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289 self.assertEqual(0xC000, result[0x00000900].value) # Status - Failed: Unable to process
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290 self.assertEqual(0, result[0x00001021].value) # Completed sub-operations
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291 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations
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292 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations
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293
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294 # "Warning, Failure, or Success shall not contain the Number
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295 # of Remaining Sub-operations Attribute."
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296 self.assertFalse(0x00001020 in result) # Remaining sub-operations
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297
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298
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299 def test_cancel(self):
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300 # Fixed in Orthanc 1.8.1.
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301 # https://groups.google.com/g/orthanc-users/c/tS826iEzHb0/m/QbPw6XPZAgAJ
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302 # https://github.com/pydicom/pynetdicom/issues/553#issuecomment-713164041
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303
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304 def Callback(event):
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305 Callback.count += 1
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306
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307 if Callback.count == 1:
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308 return 0x0000
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309 elif Callback.count == 2:
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310 to_match = PatientRootQueryRetrieveInformationModelGet
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311 cxs = [cx for cx in event.assoc.accepted_contexts if cx.abstract_syntax == to_match]
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312 cx_id = cxs[0].context_id
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313 event.assoc.send_c_cancel(9999, cx_id)
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314 return 0x0000 # Success
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315 else:
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316 raise Exception('')
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317
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318 Callback.count = 0 # Static variable of function "Callback"
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319
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320 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm')
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321 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0002.dcm')
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322 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm')
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323
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324 dataset = Dataset()
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325 dataset.QueryRetrieveLevel = 'STUDY'
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326 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775'
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327
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328 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback)
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329
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330 self.assertEqual(0xfe00, result[0x00000900].value) # Status - Sub-operations terminated due to Cancel Indication
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331 self.assertEqual(2, result[0x00001020].value) # Remaining sub-operations
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332 self.assertEqual(1, result[0x00001021].value) # Completed sub-operations
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333 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations
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334 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations
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335
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336
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337
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338 try:
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339 print('\nStarting the tests...')
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340 unittest.main(argv = [ sys.argv[0] ] + args.options)
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341
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342 finally:
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343 print('\nDone')