Mercurial > hg > orthanc-tests

annotate Plugins/CGet/Run.py @ 488:e904b2282b0e

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Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
author Alain Mazy <am@osimis.io>
date Fri, 08 Jul 2022 15:27:27 +0200
parents 06eea14c5906
children 933fe1bbce4f
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1 #!/usr/bin/python
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2
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3 # Orthanc - A Lightweight, RESTful DICOM Store
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4 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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5 # Department, University Hospital of Liege, Belgium
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6 # Copyright (C) 2017-2022 Osimis S.A., Belgium
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7 # Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 #
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9 # This program is free software: you can redistribute it and/or
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10 # modify it under the terms of the GNU General Public License as
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11 # published by the Free Software Foundation, either version 3 of the
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12 # License, or (at your option) any later version.
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13 #
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14 # This program is distributed in the hope that it will be useful, but
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15 # WITHOUT ANY WARRANTY; without even the implied warranty of
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16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 # General Public License for more details.
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18 #
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19 # You should have received a copy of the GNU General Public License
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20 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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21
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23
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24 import argparse
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25 import os
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26 import pprint
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27 import re
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28 import sys
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29 import unittest
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30
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31 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests'))
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32 from Toolbox import *
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33
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34
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35 ##
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36 ## Parse the command-line arguments
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37 ##
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38
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39 parser = argparse.ArgumentParser(description = 'Run the integration tests for the C-GET SCP of Orthanc.')
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40
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41 parser.add_argument('--server',
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42 default = 'localhost',
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43 help = 'Address of the Orthanc server to test')
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44 parser.add_argument('--aet',
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45 default = 'ORTHANC',
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46 help = 'AET of the Orthanc instance to test')
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47 parser.add_argument('--dicom',
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48 type = int,
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49 default = 4242,
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50 help = 'DICOM port of the Orthanc instance to test')
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51 parser.add_argument('--rest',
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52 type = int,
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53 default = 8042,
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54 help = 'Port to the REST API')
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55 parser.add_argument('--username',
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56 default = 'alice',
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57 help = 'Username to the REST API')
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58 parser.add_argument('--password',
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59 default = 'orthanctest',
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60 help = 'Password to the REST API')
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61 parser.add_argument('--force', help = 'Do not warn the user',
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62 action = 'store_true')
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63 parser.add_argument('options', metavar = 'N', nargs = '*',
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64 help='Arguments to Python unittest')
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65
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66 args = parser.parse_args()
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67
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68
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69 ##
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70 ## Configure the testing context
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71 ##
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72
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73 if not args.force:
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74 print("""
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75 WARNING: This test will remove all the content of your
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76 Orthanc instance running on %s!
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77
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78 Are you sure ["yes" to go on]?""" % args.server)
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79
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80 if sys.stdin.readline().strip() != 'yes':
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81 print('Aborting...')
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82 exit(0)
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83
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84
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85 ORTHANC = DefineOrthanc(server = args.server,
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86 username = args.username,
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87 password = args.password,
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88 restPort = args.rest,
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89 aet = args.aet,
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90 dicomPort = args.dicom)
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91
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92
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93 ##
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94 ## pydicom toolbox
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95 ##
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96
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97 from pydicom.dataset import Dataset
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98 from pynetdicom import (
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99 AE,
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100 evt,
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101 build_role,
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102 debug_logger,
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103 )
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104 from pynetdicom.sop_class import *
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105
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106 def ExecuteCGet(orthanc, dataset, sopClass, callback):
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107 handlers = [(evt.EVT_C_STORE, callback)]
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108
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109 ae = AE(ae_title = 'ORTHANCTEST')
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110
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111 ae.add_requested_context(PatientRootQueryRetrieveInformationModelGet)
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112 ae.add_requested_context(sopClass)
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113 role = build_role(sopClass, scp_role = True, scu_role = True)
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114
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115 assoc = ae.associate(orthanc['Server'], orthanc['DicomPort'],
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116 ext_neg = [role], evt_handlers = handlers)
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117
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118 if assoc.is_established:
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119 responses = assoc.send_c_get(
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120 dataset,
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121 PatientRootQueryRetrieveInformationModelGet,
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122 msg_id = 9999,
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123 )
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124
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125 # Only report the result of the last sub-operation
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126 last = None
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127
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128 for (result, identifier) in responses:
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129 if result:
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130 last = result
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131 else:
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132 assoc.release()
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133 raise Exception('Connection timed out, was aborted or received invalid response')
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134
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135 assoc.release()
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136 return last
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137 else:
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138 raise Exception('Association rejected, aborted or never connected')
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139
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140
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141
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142
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143
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144 ##
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145 ## The tests
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146 ##
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147 ## IMPORTANT RESOURCES:
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148 ## http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.3.html#table_C.4-3
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149 ## http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.3.3.html
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150 ##
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151
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152
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153 def DefaultCallback(event):
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154 to_match = PatientRootQueryRetrieveInformationModelGet
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155 cxs = [cx for cx in event.assoc.accepted_contexts if cx.abstract_syntax == to_match]
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156 if len(cxs) != 1:
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157 raise Exception()
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158 else:
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159 return 0x0000
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160
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161
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162
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163 class Orthanc(unittest.TestCase):
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164 def setUp(self):
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165 if (sys.version_info >= (3, 0)):
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166 # Remove annoying warnings about unclosed socket in Python 3
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167 import warnings
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168 warnings.simplefilter('ignore', ResourceWarning)
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169
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170 DropOrthanc(ORTHANC)
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171
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172
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173 def test_success(self):
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174 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm')
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175 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm')
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176
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177 dataset = Dataset()
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178 dataset.QueryRetrieveLevel = 'STUDY'
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179 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775'
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180
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181 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, DefaultCallback)
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182
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183 self.assertEqual(0x0000, result[0x00000900].value) # Status - Success
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184 self.assertEqual(2, result[0x00001021].value) # Completed sub-operations
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185 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations
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186 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations
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187
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188 # "Warning, Failure, or Success shall not contain the Number
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189 # of Remaining Sub-operations Attribute."
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190 self.assertFalse(0x00001020 in result) # Remaining sub-operations
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191
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192
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193 def test_some_failure(self):
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194 # Failure in 1 on 2 images
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195 def Callback(event):
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196 Callback.count += 1
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197
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198 if Callback.count == 1:
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199 return 0xA702 # Refused: Out of resources - Unable to perform sub-operations
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200 elif Callback.count == 2:
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201 return 0x0000
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202 else:
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203 raise Exception('')
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204
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205 Callback.count = 0 # Static variable of function "Callback"
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206
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207 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm')
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208 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0002.dcm')
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209
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210 dataset = Dataset()
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211 dataset.QueryRetrieveLevel = 'STUDY'
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212 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775'
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213
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214 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback)
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215
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216 # Fixed in Orthanc 1.8.1. "From what I read from the DICOM
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217 # standard the C-GET should at least return a warning
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218 # (0xB000), see C.4.3.1.4 Status as one or more sub-operations
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219 # failed."
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220 # https://groups.google.com/g/orthanc-users/c/tS826iEzHb0/m/KzHZk61tAgAJ
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221 # https://github.com/pydicom/pynetdicom/issues/552#issuecomment-712477451
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222
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223 self.assertEqual(0xB000, result[0x00000900].value) # Status - One or more Failures or Warnings
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224 self.assertEqual(1, result[0x00001021].value) # Completed sub-operations
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225 self.assertEqual(1, result[0x00001022].value) # Failed sub-operations
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226 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations
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227
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228 # "Warning, Failure, or Success shall not contain the Number
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229 # of Remaining Sub-operations Attribute."
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230 self.assertFalse(0x00001020 in result) # Remaining sub-operations
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231
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232
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233 def test_all_failure(self):
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234 def Callback(event):
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235 return 0xA702 # Refused: Out of resources - Unable to perform sub-operations
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236
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237 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm')
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238 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0002.dcm')
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239
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240 dataset = Dataset()
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241 dataset.QueryRetrieveLevel = 'STUDY'
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242 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775'
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243
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244 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback)
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245
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246 # Must return "Failure or Refused if all sub-operations were unsuccessful"
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247 # http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.3.3.html
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248
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249 self.assertEqual(0xA702, result[0x00000900].value) # Status - Unable to perform sub-operations
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250 self.assertEqual(0, result[0x00001021].value) # Completed sub-operations
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251 self.assertEqual(2, result[0x00001022].value) # Failed sub-operations
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252 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations
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253
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254 # "Warning, Failure, or Success shall not contain the Number
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255 # of Remaining Sub-operations Attribute."
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256 self.assertFalse(0x00001020 in result) # Remaining sub-operations
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257
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258
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259 def test_warning(self):
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260 def Callback(event):
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261 return 0xB000 # Sub-operations Complete - One or more Failures or Warnings
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262
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263 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm')
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264
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265 dataset = Dataset()
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266 dataset.QueryRetrieveLevel = 'STUDY'
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267 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775'
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268
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269 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback)
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270
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271 self.assertEqual(0xB000, result[0x00000900].value) # Status - One or more Failures or Warnings
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272 self.assertEqual(0, result[0x00001021].value) # Completed sub-operations
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273 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations
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274 self.assertEqual(1, result[0x00001023].value) # Warning sub-operations
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275
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276 # "Warning, Failure, or Success shall not contain the Number
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277 # of Remaining Sub-operations Attribute."
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278 self.assertFalse(0x00001020 in result) # Remaining sub-operations
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279
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280
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281 def test_missing(self):
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282 dataset = Dataset()
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283 dataset.QueryRetrieveLevel = 'STUDY'
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284 dataset.StudyInstanceUID = 'nope'
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285
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286 result = ExecuteCGet(ORTHANC, dataset, UltrasoundImageStorage, DefaultCallback)
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287
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288 self.assertEqual(0xC000, result[0x00000900].value) # Status - Failed: Unable to process
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289 self.assertEqual(0, result[0x00001021].value) # Completed sub-operations
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290 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations
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291 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations
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292
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293 # "Warning, Failure, or Success shall not contain the Number
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294 # of Remaining Sub-operations Attribute."
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295 self.assertFalse(0x00001020 in result) # Remaining sub-operations
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296
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297
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298 def test_cancel(self):
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299 # Fixed in Orthanc 1.8.1.
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300 # https://groups.google.com/g/orthanc-users/c/tS826iEzHb0/m/QbPw6XPZAgAJ
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301 # https://github.com/pydicom/pynetdicom/issues/553#issuecomment-713164041
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302
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303 def Callback(event):
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304 Callback.count += 1
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305
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306 if Callback.count == 1:
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307 return 0x0000
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308 elif Callback.count == 2:
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309 to_match = PatientRootQueryRetrieveInformationModelGet
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310 cxs = [cx for cx in event.assoc.accepted_contexts if cx.abstract_syntax == to_match]
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311 cx_id = cxs[0].context_id
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312 event.assoc.send_c_cancel(9999, cx_id)
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313 return 0x0000 # Success
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314 else:
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315 raise Exception('')
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316
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317 Callback.count = 0 # Static variable of function "Callback"
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318
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319 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm')
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320 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0002.dcm')
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321 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm')
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322
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323 dataset = Dataset()
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324 dataset.QueryRetrieveLevel = 'STUDY'
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325 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775'
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326
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327 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback)
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328
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329 self.assertEqual(0xfe00, result[0x00000900].value) # Status - Sub-operations terminated due to Cancel Indication
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330 self.assertEqual(2, result[0x00001020].value) # Remaining sub-operations
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331 self.assertEqual(1, result[0x00001021].value) # Completed sub-operations
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332 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations
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333 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations
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334
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335
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336
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337 try:
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338 print('\nStarting the tests...')
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339 unittest.main(argv = [ sys.argv[0] ] + args.options)
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340
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341 finally:
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342 print('\nDone')