Mercurial > hg > orthanc-tests
annotate Plugins/CGet/Run.py @ 491:b517391a035f
fix pip dep
author | Alain Mazy <am@osimis.io> |
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date | Tue, 09 Aug 2022 18:00:16 +0200 |
parents | 06eea14c5906 |
children | 933fe1bbce4f |
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1 #!/usr/bin/python |
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2 |
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3 # Orthanc - A Lightweight, RESTful DICOM Store |
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4 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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5 # Department, University Hospital of Liege, Belgium |
449
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6 # Copyright (C) 2017-2022 Osimis S.A., Belgium |
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7 # Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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8 # |
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9 # This program is free software: you can redistribute it and/or |
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10 # modify it under the terms of the GNU General Public License as |
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11 # published by the Free Software Foundation, either version 3 of the |
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12 # License, or (at your option) any later version. |
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13 # |
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14 # This program is distributed in the hope that it will be useful, but |
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15 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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17 # General Public License for more details. |
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18 # |
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19 # You should have received a copy of the GNU General Public License |
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20 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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21 |
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22 |
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23 |
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24 import argparse |
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25 import os |
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26 import pprint |
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27 import re |
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28 import sys |
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29 import unittest |
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30 |
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31 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) |
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32 from Toolbox import * |
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33 |
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34 |
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35 ## |
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36 ## Parse the command-line arguments |
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37 ## |
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38 |
375 | 39 parser = argparse.ArgumentParser(description = 'Run the integration tests for the C-GET SCP of Orthanc.') |
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40 |
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41 parser.add_argument('--server', |
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42 default = 'localhost', |
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43 help = 'Address of the Orthanc server to test') |
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44 parser.add_argument('--aet', |
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45 default = 'ORTHANC', |
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46 help = 'AET of the Orthanc instance to test') |
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47 parser.add_argument('--dicom', |
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48 type = int, |
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49 default = 4242, |
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50 help = 'DICOM port of the Orthanc instance to test') |
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51 parser.add_argument('--rest', |
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52 type = int, |
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53 default = 8042, |
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54 help = 'Port to the REST API') |
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55 parser.add_argument('--username', |
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56 default = 'alice', |
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57 help = 'Username to the REST API') |
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58 parser.add_argument('--password', |
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59 default = 'orthanctest', |
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60 help = 'Password to the REST API') |
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61 parser.add_argument('--force', help = 'Do not warn the user', |
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62 action = 'store_true') |
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63 parser.add_argument('options', metavar = 'N', nargs = '*', |
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64 help='Arguments to Python unittest') |
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65 |
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66 args = parser.parse_args() |
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67 |
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68 |
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69 ## |
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70 ## Configure the testing context |
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71 ## |
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72 |
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73 if not args.force: |
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74 print(""" |
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75 WARNING: This test will remove all the content of your |
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76 Orthanc instance running on %s! |
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77 |
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78 Are you sure ["yes" to go on]?""" % args.server) |
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79 |
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80 if sys.stdin.readline().strip() != 'yes': |
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81 print('Aborting...') |
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82 exit(0) |
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83 |
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84 |
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85 ORTHANC = DefineOrthanc(server = args.server, |
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86 username = args.username, |
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87 password = args.password, |
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88 restPort = args.rest, |
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89 aet = args.aet, |
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90 dicomPort = args.dicom) |
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91 |
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92 |
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93 ## |
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94 ## pydicom toolbox |
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95 ## |
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96 |
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97 from pydicom.dataset import Dataset |
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98 from pynetdicom import ( |
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99 AE, |
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100 evt, |
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101 build_role, |
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102 debug_logger, |
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103 ) |
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104 from pynetdicom.sop_class import * |
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105 |
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106 def ExecuteCGet(orthanc, dataset, sopClass, callback): |
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107 handlers = [(evt.EVT_C_STORE, callback)] |
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108 |
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109 ae = AE(ae_title = 'ORTHANCTEST') |
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110 |
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111 ae.add_requested_context(PatientRootQueryRetrieveInformationModelGet) |
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112 ae.add_requested_context(sopClass) |
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113 role = build_role(sopClass, scp_role = True, scu_role = True) |
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114 |
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115 assoc = ae.associate(orthanc['Server'], orthanc['DicomPort'], |
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116 ext_neg = [role], evt_handlers = handlers) |
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117 |
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118 if assoc.is_established: |
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119 responses = assoc.send_c_get( |
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120 dataset, |
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121 PatientRootQueryRetrieveInformationModelGet, |
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122 msg_id = 9999, |
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123 ) |
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124 |
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125 # Only report the result of the last sub-operation |
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126 last = None |
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127 |
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128 for (result, identifier) in responses: |
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129 if result: |
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130 last = result |
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131 else: |
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132 assoc.release() |
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133 raise Exception('Connection timed out, was aborted or received invalid response') |
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134 |
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135 assoc.release() |
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136 return last |
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137 else: |
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138 raise Exception('Association rejected, aborted or never connected') |
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139 |
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140 |
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141 |
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142 |
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143 |
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144 ## |
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145 ## The tests |
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146 ## |
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147 ## IMPORTANT RESOURCES: |
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148 ## http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.3.html#table_C.4-3 |
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149 ## http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.3.3.html |
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150 ## |
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151 |
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152 |
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153 def DefaultCallback(event): |
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154 to_match = PatientRootQueryRetrieveInformationModelGet |
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155 cxs = [cx for cx in event.assoc.accepted_contexts if cx.abstract_syntax == to_match] |
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156 if len(cxs) != 1: |
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157 raise Exception() |
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158 else: |
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159 return 0x0000 |
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160 |
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161 |
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162 |
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163 class Orthanc(unittest.TestCase): |
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164 def setUp(self): |
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165 if (sys.version_info >= (3, 0)): |
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166 # Remove annoying warnings about unclosed socket in Python 3 |
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167 import warnings |
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168 warnings.simplefilter('ignore', ResourceWarning) |
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169 |
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170 DropOrthanc(ORTHANC) |
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171 |
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172 |
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173 def test_success(self): |
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174 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm') |
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175 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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176 |
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177 dataset = Dataset() |
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178 dataset.QueryRetrieveLevel = 'STUDY' |
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179 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775' |
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180 |
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181 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, DefaultCallback) |
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182 |
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183 self.assertEqual(0x0000, result[0x00000900].value) # Status - Success |
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184 self.assertEqual(2, result[0x00001021].value) # Completed sub-operations |
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185 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations |
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186 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations |
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187 |
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188 # "Warning, Failure, or Success shall not contain the Number |
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189 # of Remaining Sub-operations Attribute." |
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190 self.assertFalse(0x00001020 in result) # Remaining sub-operations |
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191 |
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192 |
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193 def test_some_failure(self): |
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194 # Failure in 1 on 2 images |
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195 def Callback(event): |
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196 Callback.count += 1 |
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197 |
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198 if Callback.count == 1: |
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199 return 0xA702 # Refused: Out of resources - Unable to perform sub-operations |
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200 elif Callback.count == 2: |
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201 return 0x0000 |
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202 else: |
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203 raise Exception('') |
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204 |
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205 Callback.count = 0 # Static variable of function "Callback" |
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206 |
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207 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm') |
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208 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0002.dcm') |
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209 |
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210 dataset = Dataset() |
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211 dataset.QueryRetrieveLevel = 'STUDY' |
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212 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775' |
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213 |
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214 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback) |
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215 |
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216 # Fixed in Orthanc 1.8.1. "From what I read from the DICOM |
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217 # standard the C-GET should at least return a warning |
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218 # (0xB000), see C.4.3.1.4 Status as one or more sub-operations |
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219 # failed." |
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220 # https://groups.google.com/g/orthanc-users/c/tS826iEzHb0/m/KzHZk61tAgAJ |
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221 # https://github.com/pydicom/pynetdicom/issues/552#issuecomment-712477451 |
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222 |
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223 self.assertEqual(0xB000, result[0x00000900].value) # Status - One or more Failures or Warnings |
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224 self.assertEqual(1, result[0x00001021].value) # Completed sub-operations |
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225 self.assertEqual(1, result[0x00001022].value) # Failed sub-operations |
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226 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations |
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227 |
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228 # "Warning, Failure, or Success shall not contain the Number |
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229 # of Remaining Sub-operations Attribute." |
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230 self.assertFalse(0x00001020 in result) # Remaining sub-operations |
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231 |
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232 |
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233 def test_all_failure(self): |
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234 def Callback(event): |
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235 return 0xA702 # Refused: Out of resources - Unable to perform sub-operations |
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236 |
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237 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm') |
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238 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0002.dcm') |
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239 |
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240 dataset = Dataset() |
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241 dataset.QueryRetrieveLevel = 'STUDY' |
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242 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775' |
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243 |
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244 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback) |
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245 |
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246 # Must return "Failure or Refused if all sub-operations were unsuccessful" |
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247 # http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.3.3.html |
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248 |
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249 self.assertEqual(0xA702, result[0x00000900].value) # Status - Unable to perform sub-operations |
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250 self.assertEqual(0, result[0x00001021].value) # Completed sub-operations |
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251 self.assertEqual(2, result[0x00001022].value) # Failed sub-operations |
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252 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations |
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253 |
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254 # "Warning, Failure, or Success shall not contain the Number |
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255 # of Remaining Sub-operations Attribute." |
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256 self.assertFalse(0x00001020 in result) # Remaining sub-operations |
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257 |
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258 |
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259 def test_warning(self): |
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260 def Callback(event): |
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261 return 0xB000 # Sub-operations Complete - One or more Failures or Warnings |
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262 |
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263 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm') |
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264 |
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265 dataset = Dataset() |
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266 dataset.QueryRetrieveLevel = 'STUDY' |
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267 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775' |
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268 |
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269 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback) |
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270 |
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271 self.assertEqual(0xB000, result[0x00000900].value) # Status - One or more Failures or Warnings |
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272 self.assertEqual(0, result[0x00001021].value) # Completed sub-operations |
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273 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations |
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274 self.assertEqual(1, result[0x00001023].value) # Warning sub-operations |
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275 |
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276 # "Warning, Failure, or Success shall not contain the Number |
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277 # of Remaining Sub-operations Attribute." |
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278 self.assertFalse(0x00001020 in result) # Remaining sub-operations |
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279 |
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280 |
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281 def test_missing(self): |
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282 dataset = Dataset() |
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283 dataset.QueryRetrieveLevel = 'STUDY' |
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284 dataset.StudyInstanceUID = 'nope' |
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285 |
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286 result = ExecuteCGet(ORTHANC, dataset, UltrasoundImageStorage, DefaultCallback) |
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287 |
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288 self.assertEqual(0xC000, result[0x00000900].value) # Status - Failed: Unable to process |
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289 self.assertEqual(0, result[0x00001021].value) # Completed sub-operations |
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290 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations |
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291 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations |
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292 |
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293 # "Warning, Failure, or Success shall not contain the Number |
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294 # of Remaining Sub-operations Attribute." |
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295 self.assertFalse(0x00001020 in result) # Remaining sub-operations |
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296 |
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297 |
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298 def test_cancel(self): |
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299 # Fixed in Orthanc 1.8.1. |
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300 # https://groups.google.com/g/orthanc-users/c/tS826iEzHb0/m/QbPw6XPZAgAJ |
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301 # https://github.com/pydicom/pynetdicom/issues/553#issuecomment-713164041 |
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302 |
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303 def Callback(event): |
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304 Callback.count += 1 |
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305 |
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306 if Callback.count == 1: |
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307 return 0x0000 |
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308 elif Callback.count == 2: |
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309 to_match = PatientRootQueryRetrieveInformationModelGet |
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310 cxs = [cx for cx in event.assoc.accepted_contexts if cx.abstract_syntax == to_match] |
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311 cx_id = cxs[0].context_id |
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312 event.assoc.send_c_cancel(9999, cx_id) |
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313 return 0x0000 # Success |
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314 else: |
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315 raise Exception('') |
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316 |
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317 Callback.count = 0 # Static variable of function "Callback" |
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318 |
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319 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm') |
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320 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0002.dcm') |
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321 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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322 |
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323 dataset = Dataset() |
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324 dataset.QueryRetrieveLevel = 'STUDY' |
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325 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775' |
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326 |
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327 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback) |
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328 |
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329 self.assertEqual(0xfe00, result[0x00000900].value) # Status - Sub-operations terminated due to Cancel Indication |
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330 self.assertEqual(2, result[0x00001020].value) # Remaining sub-operations |
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331 self.assertEqual(1, result[0x00001021].value) # Completed sub-operations |
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332 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations |
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333 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations |
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334 |
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335 |
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336 |
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337 try: |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
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338 print('\nStarting the tests...') |
c56eaf5928f0
integration tests for c-get using pydicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
339 unittest.main(argv = [ sys.argv[0] ] + args.options) |
c56eaf5928f0
integration tests for c-get using pydicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
340 |
c56eaf5928f0
integration tests for c-get using pydicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
341 finally: |
c56eaf5928f0
integration tests for c-get using pydicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
342 print('\nDone') |