Mercurial > hg > orthanc-tests

annotate Plugins/DicomWeb/Run.py @ 85:96a4cce190dc

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 30 Jun 2016 20:59:30 +0200
parents dc90b87471a8
children 2af6c0fb850d
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1 #!/usr/bin/python
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2
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3 # Orthanc - A Lightweight, RESTful DICOM Store
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4 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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5 # Department, University Hospital of Liege, Belgium
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6 #
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7 # This program is free software: you can redistribute it and/or
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8 # modify it under the terms of the GNU General Public License as
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9 # published by the Free Software Foundation, either version 3 of the
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10 # License, or (at your option) any later version.
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11 #
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12 # This program is distributed in the hope that it will be useful, but
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13 # WITHOUT ANY WARRANTY; without even the implied warranty of
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14 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 # General Public License for more details.
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16 #
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17 # You should have received a copy of the GNU General Public License
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18 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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21
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22 # You must add the following to the configuration file:
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23 #
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24 # "DicomWeb" : {
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25 # "Servers" : {
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26 # "sample" : [ "http://localhost:8042/dicom-web/", "alice", "orthanctest" ]
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27 # }
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28 # }
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33 import os
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34 import pprint
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35 import sys
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36 import argparse
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37 import unittest
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38 import re
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39 from DicomWeb import *
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40
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41 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests'))
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42 from Toolbox import *
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43
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45 ##
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46 ## Parse the command-line arguments
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47 ##
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48
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49 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOMweb plugin.')
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50
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51 parser.add_argument('--server',
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52 default = 'localhost',
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53 help = 'Address of the Orthanc server to test')
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54 parser.add_argument('--rest',
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55 type = int,
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56 default = 8042,
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57 help = 'Port to the REST API')
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58 parser.add_argument('--username',
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59 default = 'alice',
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60 help = 'Username to the REST API')
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61 parser.add_argument('--password',
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62 default = 'orthanctest',
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63 help = 'Password to the REST API')
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64 parser.add_argument('--wado',
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65 default = '/wado',
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66 help = 'Path to the WADO API')
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67 parser.add_argument('--dicomweb',
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68 default = '/dicom-web/',
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69 help = 'Path to the DICOMweb API')
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70 parser.add_argument('--force', help = 'Do not warn the user',
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71 action = 'store_true')
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72 parser.add_argument('options', metavar = 'N', nargs = '*',
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73 help='Arguments to Python unittest')
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74
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75 args = parser.parse_args()
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78 ##
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79 ## Configure the testing context
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80 ##
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81
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82 if not args.force:
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83 print("""
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84 WARNING: This test will remove all the content of your
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85 Orthanc instance running on %s!
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86
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87 Are you sure ["yes" to go on]?""" % args.server)
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88
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89 if sys.stdin.readline().strip() != 'yes':
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90 print('Aborting...')
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91 exit(0)
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92
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93
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94 ORTHANC = DefineOrthanc(server = args.server,
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95 username = args.username,
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96 password = args.password,
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97 restPort = args.rest)
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98
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99
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100 ##
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101 ## The tests
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102 ##
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103
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104 class Orthanc(unittest.TestCase):
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105 def setUp(self):
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106 if (sys.version_info >= (3, 0)):
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107 # Remove annoying warnings about unclosed socket in Python 3
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108 import warnings
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109 warnings.simplefilter("ignore", ResourceWarning)
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110
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111 DropOrthanc(ORTHANC)
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112
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113 def test_wado_dicom(self):
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114 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm')
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115
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116 SIZE = 169478
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117 INSTANCE = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549'
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118 SERIES = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497'
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119 STUDY = '2.16.840.1.113669.632.20.1211.10000357775'
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120
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121 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado))
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122 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO'))
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123 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?objectUID=%s' % INSTANCE))
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124
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125 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s' % INSTANCE)
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126 self.assertEqual(SIZE, len(dicom))
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127
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128 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES))
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129 self.assertEqual(SIZE, len(dicom))
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130
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131 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s&studyUID=%s' % (INSTANCE, SERIES, STUDY))
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132 self.assertEqual(SIZE, len(dicom))
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133
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134 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES))
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135 self.assertEqual(SIZE, len(dicom))
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136
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137 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&studyUID=%s' % (INSTANCE, STUDY))
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138 self.assertEqual(SIZE, len(dicom))
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139
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140 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope' % INSTANCE))
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141 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&studyUID=nope' % INSTANCE))
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142 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope&studyUID=nope' % INSTANCE))
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143
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144 def test_wado_image(self):
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145 UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm')
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146 INSTANCE = '1.2.840.113704.7.1.1.6632.1127829031.2'
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147
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148 im = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s' % INSTANCE)
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149 self.assertEqual('JPEG', im.format)
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150 self.assertEqual('L', im.mode)
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151 self.assertEqual(512, im.size[0])
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152 self.assertEqual(358, im.size[1])
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153
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154 im = GetImage(ORTHANC, args.wado + '?contentType=image/jpg&requestType=WADO&objectUID=%s' % INSTANCE)
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155 self.assertEqual('JPEG', im.format)
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156
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157 im = GetImage(ORTHANC, args.wado + '?contentType=image/png&requestType=WADO&objectUID=%s' % INSTANCE)
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158 self.assertEqual('PNG', im.format)
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159 self.assertEqual('L', im.mode)
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160 self.assertEqual(512, im.size[0])
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161 self.assertEqual(358, im.size[1])
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162
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163 def test_stow(self):
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164 self.assertEqual(0, len(DoGet(ORTHANC, '/instances')))
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165 SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm'))
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166 self.assertEqual(1, len(DoGet(ORTHANC, '/instances')))
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167 a = SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm'))
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168 self.assertEqual(1, len(DoGet(ORTHANC, '/instances')))
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169
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170 self.assertEqual(0, len(a['00081198']['Value'])) # No error
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171 self.assertEqual(1, len(a['00081199']['Value'])) # 1 success
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172
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173 self.assertTrue(a['00081190']['Value'][0].endswith('studies/2.16.840.1.113669.632.20.1211.10000098591'))
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174 self.assertTrue(a['00081199']['Value'][0]['00081190']['Value'][0].
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175 endswith('series/1.2.840.113704.1.111.5692.1127828999.2/instances/1.2.840.113704.7.1.1.6632.1127829031.2'))
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176
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177 # Remove the "http://localhost:8042" prefix
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178 url = a['00081190']['Value'][0]
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179 url = re.sub(r'(http|https)://[^/]+(/.*)', r'\2', url)
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180
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181 # Get the content-length of all the multiparts of this WADO-RS request
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182 b = DoGet(ORTHANC, url).decode('utf-8', 'ignore')
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183 parts = re.findall(r'^Content-Length:\s*(\d+)\s*', b, re.IGNORECASE | re.MULTILINE)
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184 self.assertEqual(1, len(parts))
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185 self.assertEqual(os.path.getsize(GetDatabasePath('Phenix/IM-0001-0001.dcm')), int(parts[0]))
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186
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187 def test_server_get(self):
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188 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm')
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189
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190 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/servers')))
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191 self.assertTrue('sample' in DoGet(ORTHANC, '/dicom-web/servers'))
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192
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193 sample = DoGet(ORTHANC, '/dicom-web/servers/sample')
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194 self.assertEqual(3, len(sample))
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195 self.assertTrue('stow' in sample)
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196 self.assertTrue('retrieve' in sample)
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197 self.assertTrue('get' in sample)
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198
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199 # application/dicom+xml
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200 self.assertEqual(2, len(re.findall('^--', DoGet(ORTHANC, '/dicom-web/studies'), re.MULTILINE)))
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201 self.assertEqual(2, len(re.findall('^--', DoPost(ORTHANC, '/dicom-web/servers/sample/get',
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202 { 'Uri' : '/studies' }), re.MULTILINE)))
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203
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204 # application/dicom+json
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205 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', headers = { 'Accept' : 'application/json' })))
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206 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get',
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207 { 'Uri' : '/studies',
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208 'HttpHeaders' : { 'Accept' : 'application/json' }})))
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209
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210
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211 def test_server_stow(self):
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212 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm')
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213
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214 self.assertRaises(Exception, lambda:
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215 DoPost(ORTHANC, '/dicom-web/servers/sample/stow',
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216 { 'Resources' : [ 'nope' ]})) # inexisting resource
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217
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218 self.assertEqual(0, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow',
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219 { 'Resources' : [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]}))) # patient
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220
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221 self.assertEqual(0, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow',
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222 { 'Resources' : [ '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' ]}))) # study
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223
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224 self.assertEqual(0, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow',
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225 { 'Resources' : [ '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' ]}))) # series
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226
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227 self.assertEqual(0, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow',
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228 { 'Resources' : [ 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ]}))) # instance
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229
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230 self.assertEqual(0, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow',
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231 { 'Resources' : [
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232 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17',
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233 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918',
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234 '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285',
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235 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ]}))) # altogether
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236
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237
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238 def test_server_retrieve(self):
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239 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm')
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240 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0002.dcm')
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241 UploadInstance(ORTHANC, 'Knee/T2/IM-0001-0001.dcm')
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242
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243 self.assertRaises(Exception, lambda:
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244 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve',
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245 { 'Resources' : [ { 'Study' : 'nope' } ]})) # inexisting resource
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246
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247 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve',
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248 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881' } ] })
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249 self.assertEqual(3, len(t['Instances']))
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250
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251 # Missing "Study" field
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252 self.assertRaises(Exception, lambda:
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253 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve',
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254 { 'Resources' : [ { 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ]}))
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255
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256 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve',
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257 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881',
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258 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] })
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259 self.assertEqual(2, len(t['Instances']))
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260
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261 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve',
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262 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881',
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263 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' } ] })
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264 self.assertEqual(1, len(t['Instances']))
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265
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266 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve',
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267 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881',
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268 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' },
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269 { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881',
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270 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] })
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271 self.assertEqual(3, len(t['Instances']))
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272
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273 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve',
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274 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881',
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275 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350',
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276 'Instance' : '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' } ] })
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277 self.assertEqual(1, len(t['Instances']))
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278
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279
32
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280
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281
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282 try:
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283 print('\nStarting the tests...')
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284 unittest.main(argv = [ sys.argv[0] ] + args.options)
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285
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286 finally:
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287 print('\nDone')