Mercurial > hg > orthanc-tests
annotate Plugins/WebDav/Run.py @ 530:937bee4a2fe3
fix
author | Alain Mazy <am@osimis.io> |
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date | Tue, 18 Apr 2023 17:14:01 +0200 |
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1 #!/usr/bin/python |
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2 |
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3 # Orthanc - A Lightweight, RESTful DICOM Store |
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4 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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5 # Department, University Hospital of Liege, Belgium |
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6 # Copyright (C) 2017-2023 Osimis S.A., Belgium |
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7 # Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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8 # |
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9 # This program is free software: you can redistribute it and/or |
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10 # modify it under the terms of the GNU General Public License as |
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11 # published by the Free Software Foundation, either version 3 of the |
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12 # License, or (at your option) any later version. |
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13 # |
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14 # This program is distributed in the hope that it will be useful, but |
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15 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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17 # General Public License for more details. |
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18 # |
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19 # You should have received a copy of the GNU General Public License |
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20 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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21 |
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22 |
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23 |
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24 import argparse |
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25 import easywebdav |
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26 import io |
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27 import os |
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28 import pprint |
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29 import re |
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30 import sys |
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31 import unittest |
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32 |
339 | 33 # https://stackoverflow.com/a/49336105/881731 |
34 if ((3, 0) <= sys.version_info <= (3, 9)): | |
35 from urllib.parse import unquote | |
36 elif ((2, 0) <= sys.version_info <= (2, 9)): | |
37 from urlparse import unquote | |
38 | |
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39 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) |
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40 from Toolbox import * |
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41 |
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42 |
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43 ## |
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44 ## Parse the command-line arguments |
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45 ## |
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46 |
375 | 47 parser = argparse.ArgumentParser(description = 'Run the integration tests for the WebDAV server.') |
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48 |
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49 parser.add_argument('--server', |
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50 default = 'localhost', |
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51 help = 'Address of the Orthanc server to test') |
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52 parser.add_argument('--rest', |
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53 type = int, |
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54 default = 8042, |
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55 help = 'Port to the REST API') |
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56 parser.add_argument('--username', |
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57 default = 'alice', |
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58 help = 'Username to the REST API') |
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59 parser.add_argument('--password', |
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60 default = 'orthanctest', |
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61 help = 'Password to the REST API') |
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62 parser.add_argument('--force', help = 'Do not warn the user', |
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63 action = 'store_true') |
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64 parser.add_argument('options', metavar = 'N', nargs = '*', |
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65 help='Arguments to Python unittest') |
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66 |
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67 args = parser.parse_args() |
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68 |
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69 |
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70 ## |
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71 ## Configure the testing context |
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72 ## |
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73 |
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74 if not args.force: |
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75 print(""" |
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76 WARNING: This test will remove all the content of your |
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77 Orthanc instance running on %s! |
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78 |
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79 Are you sure ["yes" to go on]?""" % args.server) |
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80 |
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81 if sys.stdin.readline().strip() != 'yes': |
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82 print('Aborting...') |
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83 exit(0) |
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84 |
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85 |
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86 ORTHANC = DefineOrthanc(server = args.server, |
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87 username = args.username, |
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88 password = args.password, |
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89 restPort = args.rest) |
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90 |
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91 WEBDAV = easywebdav.connect(args.server, |
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92 port = args.rest, |
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93 username = args.username, |
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94 password = args.password) |
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95 |
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96 |
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97 ## |
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98 ## The tests |
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99 ## |
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100 |
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101 |
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102 def ListFiles(path, recursive): |
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103 result = [ ] |
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104 for i in WEBDAV.ls(path): |
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105 if i.name == path: |
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106 pass |
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107 elif i.contenttype == '': |
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108 if recursive: |
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109 result += ListFiles(i.name + '/', True) |
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110 else: |
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111 result.append(i.name) |
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112 return result |
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113 |
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114 |
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115 def GetFileInfo(path): |
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116 for i in WEBDAV.ls(path[0 : path.rfind('/')]): |
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117 if i.name == path: |
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118 return i |
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119 raise Exception('Cannot find: %s' % path) |
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120 |
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121 |
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122 def DownloadFile(path): |
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123 with tempfile.NamedTemporaryFile(delete = False) as f: |
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124 f.close() |
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125 WEBDAV.download(path, f.name) |
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126 with open(f.name, 'rb') as g: |
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127 result = g.read() |
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128 os.unlink(f.name) |
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129 return result |
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130 |
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131 |
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132 class Orthanc(unittest.TestCase): |
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133 def setUp(self): |
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134 if (sys.version_info >= (3, 0)): |
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135 # Remove annoying warnings about unclosed socket in Python 3 |
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136 import warnings |
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137 warnings.simplefilter("ignore", ResourceWarning) |
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138 |
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139 DropOrthanc(ORTHANC) |
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140 |
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141 |
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142 def test_root(self): |
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143 self.assertEqual(6, len(WEBDAV.ls('/webdav/'))) |
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144 for i in WEBDAV.ls('/webdav/'): |
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145 self.assertTrue(i.name in [ |
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146 '/webdav/', |
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147 '/webdav/by-dates', |
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148 '/webdav/by-patients', |
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149 '/webdav/by-studies', |
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150 '/webdav/by-uids', |
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151 '/webdav/uploads' |
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152 ]) |
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153 self.assertEqual(0, i.size) |
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154 self.assertEqual('', i.contenttype) |
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155 |
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156 patients = WEBDAV.ls('/webdav/by-patients/') |
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157 self.assertEqual(1, len(patients)) |
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158 self.assertEqual(patients[0].name, '/webdav/by-patients/') |
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159 self.assertEqual(0, patients[0].size) |
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160 self.assertEqual('', patients[0].contenttype) |
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161 |
342
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162 self.assertRaises(Exception, lambda: WEBDAV.delete('/webdav/nope')) |
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163 self.assertRaises(Exception, lambda: WEBDAV.delete('/webdav/by-uids')) |
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164 |
338
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165 |
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166 def test_upload(self): |
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167 self.assertEqual(0, len(ListFiles('/webdav/uploads/', True))) |
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168 |
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169 uploads = WEBDAV.ls('/webdav/uploads/') |
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170 for i in uploads: |
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171 self.assertEqual(i.contenttype, '') # Only folders are allowed |
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172 |
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173 self.assertEqual(0, len(DoGet(ORTHANC, '/studies'))) |
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174 WEBDAV.upload(GetDatabasePath('DummyCT.dcm'), '/webdav/uploads/DummyCT.dcm') |
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175 |
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176 while len(ListFiles('/webdav/uploads/', True)) > 1: |
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177 time.sleep(0.1) |
343 | 178 time.sleep(0.1) # Give some more delay to be sure that the store has succeeded (necessary for Wine) |
338
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179 |
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180 instances = DoGet(ORTHANC, '/instances?expand') |
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181 self.assertEqual(1, len(instances)) |
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182 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
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183 instances[0]['MainDicomTags']['SOPInstanceUID']) |
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184 |
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185 |
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186 def test_upload_folders(self): |
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187 self.assertEqual(0, len(ListFiles('/webdav/uploads/', True))) |
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188 self.assertEqual(0, len(DoGet(ORTHANC, '/studies'))) |
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189 |
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190 try: |
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191 WEBDAV.mkdir('/webdav/uploads/a') |
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192 except: |
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193 pass |
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194 try: |
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195 WEBDAV.mkdir('/webdav/uploads/b') |
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196 except: |
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197 pass |
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198 |
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199 WEBDAV.upload(GetDatabasePath('DummyCT.dcm'), '/webdav/uploads/a/DummyCT.dcm') |
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200 WEBDAV.upload(GetDatabasePath('ColorTestMalaterre.dcm'), '/webdav/uploads/b/ColorTestMalaterre.dcm') |
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201 |
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202 while len(ListFiles('/webdav/uploads/', True)) > 1: |
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203 time.sleep(0.1) |
343 | 204 time.sleep(0.1) # Give some more delay to be sure that the store has succeeded (necessary for Wine) |
338
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205 |
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206 self.assertEqual(2, len(DoGet(ORTHANC, '/instances'))) |
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207 |
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208 |
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209 def test_by_uids(self): |
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210 self.assertEqual(1, len(WEBDAV.ls('/webdav/by-uids/'))) |
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211 self.assertEqual(0, len(ListFiles('/webdav/by-uids/', True))) |
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212 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) |
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213 |
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214 i = UploadInstance(ORTHANC, 'DummyCT.dcm')['ID'] |
339 | 215 tags = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) |
216 studyUid = tags['StudyInstanceUID'] | |
217 seriesUid = tags['SeriesInstanceUID'] | |
218 sopUid = tags['SOPInstanceUID'] | |
338
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219 |
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220 self.assertEqual(0, len(ListFiles('/webdav/by-uids/', False))) |
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221 self.assertEqual(1, len(ListFiles('/webdav/by-uids/%s/' % studyUid, False))) |
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222 self.assertEqual(2, len(ListFiles('/webdav/by-uids/%s/%s/' % (studyUid, seriesUid), False))) |
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223 |
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224 content = ListFiles('/webdav/by-uids/', True) |
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225 self.assertEqual(3, len(content)) |
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226 self.assertTrue(('/webdav/by-uids/%s/study.json' % studyUid) in content) |
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227 self.assertTrue(('/webdav/by-uids/%s/%s/series.json' % (studyUid, seriesUid)) in content) |
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228 self.assertTrue(('/webdav/by-uids/%s/%s/%s.dcm' % (studyUid, seriesUid, sopUid)) in content) |
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229 |
342
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230 # Deleting the virtual files "study|series.json" has no |
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231 # effect, but is needed for recursive DELETE in some file explorers |
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232 WEBDAV.delete('/webdav/by-uids/%s/study.json' % studyUid) |
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233 WEBDAV.delete('/webdav/by-uids/%s/%s/series.json' % (studyUid, seriesUid)) |
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234 |
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235 info = GetFileInfo('/webdav/by-uids/%s/study.json' % studyUid) |
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236 self.assertEqual(info.contenttype, 'application/json') |
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237 |
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238 info = GetFileInfo('/webdav/by-uids/%s/%s/series.json' % (studyUid, seriesUid)) |
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239 self.assertEqual(info.contenttype, 'application/json') |
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240 |
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241 info = GetFileInfo('/webdav/by-uids/%s/%s/%s.dcm' % (studyUid, seriesUid, sopUid)) |
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242 self.assertEqual(info.contenttype, 'application/dicom') |
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243 self.assertEqual(info.size, os.stat(GetDatabasePath('DummyCT.dcm')).st_size) |
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244 |
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245 a = DownloadFile('/webdav/by-uids/%s/%s/%s.dcm' % (studyUid, seriesUid, sopUid)) |
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246 self.assertEqual(len(a), info.size) |
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247 |
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248 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
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249 self.assertEqual(a, f.read()) |
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250 |
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251 self.assertEqual(studyUid, json.loads(DownloadFile('/webdav/by-uids/%s/study.json' % studyUid)) |
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252 ['MainDicomTags']['StudyInstanceUID']) |
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253 |
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254 self.assertEqual(seriesUid, json.loads(DownloadFile('/webdav/by-uids/%s/%s/series.json' % (studyUid, seriesUid))) |
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255 ['MainDicomTags']['SeriesInstanceUID']) |
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256 |
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257 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) |
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258 WEBDAV.delete('/webdav/by-uids/%s/%s/%s.dcm' % (studyUid, seriesUid, sopUid)) |
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259 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) |
339 | 260 self.assertEqual(0, len(ListFiles('/webdav/by-uids/', True))) |
261 | |
262 | |
263 def test_by_patients(self): | |
264 self.assertEqual(0, len(ListFiles('/webdav/by-dates/', True))) | |
265 self.assertEqual(0, len(ListFiles('/webdav/by-patients/', True))) | |
266 self.assertEqual(0, len(ListFiles('/webdav/by-studies/', True))) | |
267 self.assertEqual(0, len(ListFiles('/webdav/by-uids/', True))) | |
268 | |
269 self.assertEqual(1, len(WEBDAV.ls('/webdav/by-patients/'))) | |
270 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) | |
271 | |
272 i = UploadInstance(ORTHANC, 'DummyCT.dcm')['ID'] | |
273 tags = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) | |
274 patient = '%s - %s' % (tags['PatientID'], tags['PatientName']) | |
275 study = '%s - %s' % (tags['StudyDate'], tags['StudyDescription']) | |
276 series = '%s - %s' % (tags['Modality'], tags['SeriesDescription']) | |
277 self.assertEqual('ozp00SjY2xG - KNIX', patient) | |
278 self.assertEqual('20070101 - Knee (R)', study) | |
279 self.assertEqual('MR - AX. FSE PD', series) | |
280 | |
281 self.assertEqual(1, len(ListFiles('/webdav/by-dates/', True))) | |
282 self.assertEqual(1, len(ListFiles('/webdav/by-patients/', True))) | |
283 self.assertEqual(1, len(ListFiles('/webdav/by-studies/', True))) | |
284 self.assertEqual(3, len(ListFiles('/webdav/by-uids/', True))) | |
285 | |
286 self.assertEqual(0, len(ListFiles('/webdav/by-patients/', False))) | |
287 self.assertEqual(2, len(WEBDAV.ls('/webdav/by-patients/'))) | |
288 self.assertEqual(0, len(ListFiles('/webdav/by-patients/%s' % patient, False))) | |
289 self.assertEqual(2, len(WEBDAV.ls('/webdav/by-patients/%s' % patient))) | |
290 self.assertEqual(0, len(ListFiles('/webdav/by-patients/%s/%s' % (patient, study), False))) | |
291 self.assertEqual(2, len(WEBDAV.ls('/webdav/by-patients/%s/%s' % (patient, study)))) | |
292 | |
293 folder = '/webdav/by-patients/%s/%s/%s' % (patient, study, series) | |
294 self.assertEqual(1, len(ListFiles(folder, False))) | |
295 self.assertEqual(2, len(WEBDAV.ls(folder))) | |
296 self.assertEqual('%s/%s.dcm' % (folder, i), unquote(ListFiles(folder, False) [0])) | |
297 | |
340
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298 files = ListFiles('/webdav/by-patients/', True) |
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299 self.assertEqual(1, len(files)) |
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300 self.assertEqual('%s/%s.dcm' % (folder, i), unquote(files[0])) |
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301 |
339 | 302 a = DownloadFile('%s/%s.dcm' % (folder, i)) |
303 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: | |
304 self.assertEqual(a, f.read()) | |
305 | |
306 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
307 WEBDAV.delete('%s/%s.dcm' % (folder, i)) | |
308 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) | |
309 | |
310 self.assertEqual(0, len(ListFiles('/webdav/by-dates/', True))) | |
311 self.assertEqual(0, len(ListFiles('/webdav/by-patients/', True))) | |
312 self.assertEqual(0, len(ListFiles('/webdav/by-studies/', True))) | |
313 self.assertEqual(0, len(ListFiles('/webdav/by-uids/', True))) | |
314 | |
315 | |
316 def test_by_studies(self): | |
317 self.assertEqual(0, len(ListFiles('/webdav/by-studies/', True))) | |
318 self.assertEqual(1, len(WEBDAV.ls('/webdav/by-patients/'))) | |
319 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) | |
320 | |
321 i = UploadInstance(ORTHANC, 'DummyCT.dcm')['ID'] | |
322 tags = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) | |
323 study = '%s - %s - %s' % (tags['PatientID'], tags['PatientName'], tags['StudyDescription']) | |
324 series = '%s - %s' % (tags['Modality'], tags['SeriesDescription']) | |
325 self.assertEqual('ozp00SjY2xG - KNIX - Knee (R)', study) | |
326 self.assertEqual('MR - AX. FSE PD', series) | |
327 | |
328 self.assertEqual(0, len(ListFiles('/webdav/by-studies/', False))) | |
329 self.assertEqual(2, len(WEBDAV.ls('/webdav/by-studies/'))) | |
330 self.assertEqual(0, len(ListFiles('/webdav/by-studies/%s' % study, False))) | |
331 self.assertEqual(2, len(WEBDAV.ls('/webdav/by-studies/%s' % study))) | |
332 | |
333 folder = '/webdav/by-studies/%s/%s' % (study, series) | |
334 self.assertEqual(1, len(ListFiles(folder, False))) | |
335 self.assertEqual(2, len(WEBDAV.ls(folder))) | |
336 self.assertEqual('%s/%s.dcm' % (folder, i), unquote(ListFiles(folder, False) [0])) | |
337 | |
340
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338 files = ListFiles('/webdav/by-studies/', True) |
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339 self.assertEqual(1, len(files)) |
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340 self.assertEqual('%s/%s.dcm' % (folder, i), unquote(files[0])) |
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341 |
339 | 342 a = DownloadFile('%s/%s.dcm' % (folder, i)) |
343 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: | |
344 self.assertEqual(a, f.read()) | |
345 | |
346 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
347 WEBDAV.delete('%s/%s.dcm' % (folder, i)) | |
348 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) | |
349 self.assertEqual(0, len(ListFiles('/webdav/by-studies/', True))) | |
350 | |
351 | |
340
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352 def test_by_dates(self): |
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353 self.assertEqual(0, len(ListFiles('/webdav/by-dates/', True))) |
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354 self.assertEqual(1, len(WEBDAV.ls('/webdav/by-patients/'))) |
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355 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) |
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356 |
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357 i = UploadInstance(ORTHANC, 'DummyCT.dcm')['ID'] |
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358 tags = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) |
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359 year = tags['StudyDate'][0:4] |
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360 month = tags['StudyDate'][4:6] |
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361 study = '%s - %s - %s' % (tags['PatientID'], tags['PatientName'], tags['StudyDescription']) |
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362 series = '%s - %s' % (tags['Modality'], tags['SeriesDescription']) |
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363 self.assertEqual('ozp00SjY2xG - KNIX - Knee (R)', study) |
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364 self.assertEqual('MR - AX. FSE PD', series) |
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365 |
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366 self.assertEqual(0, len(ListFiles('/webdav/by-dates/', False))) |
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367 self.assertEqual(2, len(WEBDAV.ls('/webdav/by-dates/'))) |
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368 self.assertEqual(0, len(ListFiles('/webdav/by-dates/%s' % year, False))) |
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369 self.assertEqual(2, len(WEBDAV.ls('/webdav/by-dates/%s' % year))) |
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370 self.assertEqual(0, len(ListFiles('/webdav/by-dates/%s/%s-%s' % (year, year, month), False))) |
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371 self.assertEqual(2, len(WEBDAV.ls('/webdav/by-dates/%s/%s-%s' % (year, year, month)))) |
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372 |
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373 folder = '/webdav/by-dates/%s/%s-%s/%s/%s' % (year, year, month, study, series) |
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374 self.assertEqual(1, len(ListFiles(folder, False))) |
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375 self.assertEqual(2, len(WEBDAV.ls(folder))) |
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376 self.assertEqual('%s/%s.dcm' % (folder, i), unquote(ListFiles(folder, False) [0])) |
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377 |
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378 files = ListFiles('/webdav/by-dates/', True) |
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379 self.assertEqual(1, len(files)) |
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380 self.assertEqual('%s/%s.dcm' % (folder, i), unquote(files[0])) |
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381 |
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382 a = DownloadFile('%s/%s.dcm' % (folder, i)) |
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383 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
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384 self.assertEqual(a, f.read()) |
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385 |
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386 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) |
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387 WEBDAV.delete('%s/%s.dcm' % (folder, i)) |
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388 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) |
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389 self.assertEqual(0, len(ListFiles('/webdav/by-dates/', True))) |
339 | 390 |
342
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391 |
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392 def test_delete_folder(self): |
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393 # These deletes should have no effect |
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394 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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395 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) |
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396 WEBDAV.delete('/webdav/by-uids/1.2.840.113619.2.176.2025.1499492.7391.1171285944.390/study.json') |
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397 WEBDAV.delete('/webdav/by-uids/1.2.840.113619.2.176.2025.1499492.7391.1171285944.390/1.2.840.113619.2.176.2025.1499492.7391.1171285944.394/series.json') |
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398 WEBDAV.delete('/webdav/by-dates/2007/2007-02') |
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399 WEBDAV.delete('/webdav/by-dates/2006') |
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400 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) |
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401 |
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402 for path in [ |
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403 '/webdav/by-uids/1.2.840.113619.2.176.2025.1499492.7391.1171285944.390/1.2.840.113619.2.176.2025.1499492.7391.1171285944.394/1.2.840.113619.2.176.2025.1499492.7040.1171286242.109.dcm', |
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404 '/webdav/by-patients/ozp00SjY2xG - KNIX/20070101 - Knee (R)/MR - AX. FSE PD/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d.dcm', |
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405 '/webdav/by-studies/ozp00SjY2xG - KNIX - Knee (R)/MR - AX. FSE PD/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d.dcm', |
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406 '/webdav/by-dates/2007/2007-01/ozp00SjY2xG - KNIX - Knee (R)/MR - AX. FSE PD/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d.dcm', |
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407 ]: |
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408 tokens = path.split('/') |
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409 for i in range(4, len(tokens) + 1): |
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410 p = '/'.join(tokens[0:i]) |
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411 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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412 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) |
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413 WEBDAV.delete(p) |
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414 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) |
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415 |
358
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416 |
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417 def test_upload_zip(self): |
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418 f = StringIO() |
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419 with zipfile.ZipFile(f, 'w') as z: |
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420 z.writestr('hello/world/invalid.txt', 'Hello world') |
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421 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as g: |
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422 c = g.read() |
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423 z.writestr('hello/world/dicom1.dcm', c) |
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424 z.writestr('hello/world/dicom2.dcm', c) |
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425 |
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426 f.seek(0) |
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427 archive = f.read() |
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428 |
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429 self.assertEqual(0, len(DoGet(ORTHANC, '/studies'))) |
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430 |
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431 with tempfile.NamedTemporaryFile(delete = True) as f: |
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432 f.close() |
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433 with open(f.name, 'wb') as g: |
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434 g.write(archive) |
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435 WEBDAV.upload(f.name, '/webdav/uploads/DummyCT.zip') |
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436 os.unlink(f.name) |
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437 |
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438 while len(ListFiles('/webdav/uploads/', True)) > 1: |
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439 time.sleep(0.1) |
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440 time.sleep(0.1) # Give some more delay to be sure that the store has succeeded (necessary for Wine) |
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441 |
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442 instances = DoGet(ORTHANC, '/instances') |
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443 self.assertEqual(1, len(instances)) |
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444 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', instances[0]) |
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445 |
339 | 446 |
338
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447 try: |
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448 print('\nStarting the tests...') |
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449 unittest.main(argv = [ sys.argv[0] ] + args.options) |
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450 |
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451 finally: |
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452 print('\nDone') |