Mercurial > hg > orthanc-tests
annotate Plugins/DicomWeb/Run.py @ 228:84244277413b
fix
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
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| date | Wed, 27 Feb 2019 15:41:35 +0100 |
| parents | 875ff7460ae8 |
| children | a4804d3f7499 |
| rev | line source |
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1 #!/usr/bin/python |
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2 # -*- coding: utf-8 -*- |
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3 |
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4 |
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5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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7 # Department, University Hospital of Liege, Belgium |
| 195 | 8 # Copyright (C) 2017-2019 Osimis S.A., Belgium |
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9 # |
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10 # This program is free software: you can redistribute it and/or |
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11 # modify it under the terms of the GNU General Public License as |
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12 # published by the Free Software Foundation, either version 3 of the |
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13 # License, or (at your option) any later version. |
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14 # |
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15 # This program is distributed in the hope that it will be useful, but |
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16 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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18 # General Public License for more details. |
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19 # |
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20 # You should have received a copy of the GNU General Public License |
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21 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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22 |
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23 |
| 85 | 24 |
| 25 # You must add the following to the configuration file: | |
| 26 # | |
| 27 # "DicomWeb" : { | |
| 28 # "Servers" : { | |
| 29 # "sample" : [ "http://localhost:8042/dicom-web/", "alice", "orthanctest" ] | |
| 30 # } | |
| 31 # } | |
| 32 | |
| 33 | |
| 34 | |
| 35 | |
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36 import os |
| 33 | 37 import pprint |
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38 import sys |
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39 import argparse |
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40 import unittest |
| 83 | 41 import re |
| 33 | 42 from DicomWeb import * |
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43 |
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44 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) |
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45 from Toolbox import * |
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46 |
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47 |
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48 ## |
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49 ## Parse the command-line arguments |
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50 ## |
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51 |
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52 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOMweb plugin.') |
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53 |
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54 parser.add_argument('--server', |
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55 default = 'localhost', |
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56 help = 'Address of the Orthanc server to test') |
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57 parser.add_argument('--rest', |
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58 type = int, |
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59 default = 8042, |
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60 help = 'Port to the REST API') |
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61 parser.add_argument('--username', |
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62 default = 'alice', |
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63 help = 'Username to the REST API') |
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64 parser.add_argument('--password', |
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65 default = 'orthanctest', |
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66 help = 'Password to the REST API') |
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67 parser.add_argument('--wado', |
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68 default = '/wado', |
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69 help = 'Path to the WADO API') |
| 33 | 70 parser.add_argument('--dicomweb', |
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71 default = '/dicom-web/', |
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72 help = 'Path to the DICOMweb API') |
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73 parser.add_argument('--force', help = 'Do not warn the user', |
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74 action = 'store_true') |
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75 parser.add_argument('options', metavar = 'N', nargs = '*', |
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76 help='Arguments to Python unittest') |
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77 |
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78 args = parser.parse_args() |
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79 |
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80 |
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81 ## |
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82 ## Configure the testing context |
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83 ## |
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84 |
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85 if not args.force: |
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86 print(""" |
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87 WARNING: This test will remove all the content of your |
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88 Orthanc instance running on %s! |
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89 |
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90 Are you sure ["yes" to go on]?""" % args.server) |
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91 |
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92 if sys.stdin.readline().strip() != 'yes': |
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93 print('Aborting...') |
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94 exit(0) |
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95 |
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96 |
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97 ORTHANC = DefineOrthanc(server = args.server, |
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98 username = args.username, |
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99 password = args.password, |
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100 restPort = args.rest) |
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101 |
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102 |
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103 ## |
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104 ## The tests |
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105 ## |
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106 |
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107 class Orthanc(unittest.TestCase): |
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108 def setUp(self): |
| 83 | 109 if (sys.version_info >= (3, 0)): |
| 110 # Remove annoying warnings about unclosed socket in Python 3 | |
| 111 import warnings | |
| 112 warnings.simplefilter("ignore", ResourceWarning) | |
| 113 | |
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114 DropOrthanc(ORTHANC) |
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115 |
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116 def test_wado_dicom(self): |
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117 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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118 |
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119 SIZE = 169478 |
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120 INSTANCE = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
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121 SERIES = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
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122 STUDY = '2.16.840.1.113669.632.20.1211.10000357775' |
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123 |
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124 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado)) |
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125 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO')) |
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126 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?objectUID=%s' % INSTANCE)) |
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127 |
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128 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s' % INSTANCE) |
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129 self.assertEqual(SIZE, len(dicom)) |
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130 |
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131 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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132 self.assertEqual(SIZE, len(dicom)) |
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133 |
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134 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s&studyUID=%s' % (INSTANCE, SERIES, STUDY)) |
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135 self.assertEqual(SIZE, len(dicom)) |
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136 |
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137 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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138 self.assertEqual(SIZE, len(dicom)) |
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139 |
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140 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&studyUID=%s' % (INSTANCE, STUDY)) |
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141 self.assertEqual(SIZE, len(dicom)) |
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142 |
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143 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope' % INSTANCE)) |
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144 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&studyUID=nope' % INSTANCE)) |
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145 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope&studyUID=nope' % INSTANCE)) |
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146 |
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147 def test_wado_image(self): |
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148 UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') |
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149 INSTANCE = '1.2.840.113704.7.1.1.6632.1127829031.2' |
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150 |
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151 im = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s' % INSTANCE) |
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152 self.assertEqual('JPEG', im.format) |
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153 self.assertEqual('L', im.mode) |
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154 self.assertEqual(512, im.size[0]) |
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155 self.assertEqual(358, im.size[1]) |
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156 |
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157 im = GetImage(ORTHANC, args.wado + '?contentType=image/jpg&requestType=WADO&objectUID=%s' % INSTANCE) |
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158 self.assertEqual('JPEG', im.format) |
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159 |
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160 im = GetImage(ORTHANC, args.wado + '?contentType=image/png&requestType=WADO&objectUID=%s' % INSTANCE) |
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161 self.assertEqual('PNG', im.format) |
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162 self.assertEqual('L', im.mode) |
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163 self.assertEqual(512, im.size[0]) |
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164 self.assertEqual(358, im.size[1]) |
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165 |
| 33 | 166 def test_stow(self): |
| 167 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) | |
| 168 SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
| 169 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
| 170 a = SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
| 171 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
| 172 | |
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173 self.assertEqual(4, len(a)) |
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174 |
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175 # Specific character set |
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176 self.assertTrue('00080005' in a) |
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177 self.assertEqual('CS', a['00080005']['vr']) |
| 33 | 178 |
| 179 self.assertTrue(a['00081190']['Value'][0].endswith('studies/2.16.840.1.113669.632.20.1211.10000098591')) | |
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180 self.assertEqual('UR', a['00081190']['vr']) |
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181 |
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182 self.assertFalse('Value' in a['00081198']) # No error => empty sequence |
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183 self.assertEqual('SQ', a['00081198']['vr']) |
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184 |
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185 self.assertEqual(1, len(a['00081199']['Value'])) # 1 success |
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186 self.assertEqual('SQ', a['00081199']['vr']) |
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187 |
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188 b = a['00081199']['Value'][0] |
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189 |
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190 # Referenced SOP class UID |
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191 self.assertEqual('UI', b['00081150']['vr']) |
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192 self.assertEqual(1, len(b['00081150']['Value'])) |
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193 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', b['00081150']['Value'][0]) |
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194 |
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195 # Referenced SOP instance UID |
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196 self.assertEqual('UI', b['00081155']['vr']) |
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197 self.assertEqual(1, len(b['00081155']['Value'])) |
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198 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', b['00081155']['Value'][0]) |
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199 |
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200 # Retrieve URL |
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201 self.assertEqual('UR', b['00081190']['vr']) |
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202 self.assertEqual(1, len(b['00081190']['Value'])) |
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203 self.assertTrue(b['00081190']['Value'][0]. |
| 33 | 204 endswith('series/1.2.840.113704.1.111.5692.1127828999.2/instances/1.2.840.113704.7.1.1.6632.1127829031.2')) |
| 205 | |
| 83 | 206 # Remove the "http://localhost:8042" prefix |
| 207 url = a['00081190']['Value'][0] | |
| 208 url = re.sub(r'(http|https)://[^/]+(/.*)', r'\2', url) | |
| 209 | |
| 210 # Get the content-length of all the multiparts of this WADO-RS request | |
| 211 b = DoGet(ORTHANC, url).decode('utf-8', 'ignore') | |
| 212 parts = re.findall(r'^Content-Length:\s*(\d+)\s*', b, re.IGNORECASE | re.MULTILINE) | |
| 213 self.assertEqual(1, len(parts)) | |
| 214 self.assertEqual(os.path.getsize(GetDatabasePath('Phenix/IM-0001-0001.dcm')), int(parts[0])) | |
| 33 | 215 |
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216 |
| 84 | 217 def test_server_get(self): |
| 218 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') | |
| 219 | |
| 220 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/servers'))) | |
| 221 self.assertTrue('sample' in DoGet(ORTHANC, '/dicom-web/servers')) | |
| 222 | |
| 129 | 223 serversReadback = DoGet(ORTHANC, '/dicom-web/servers?expand') |
| 224 self.assertEqual('http://localhost:8042/dicom-web/', serversReadback['sample']['Url']) | |
| 225 self.assertEqual('alice', serversReadback['sample']['Username']) | |
| 226 | |
| 84 | 227 sample = DoGet(ORTHANC, '/dicom-web/servers/sample') |
| 228 self.assertEqual(3, len(sample)) | |
| 229 self.assertTrue('stow' in sample) | |
| 230 self.assertTrue('retrieve' in sample) | |
| 231 self.assertTrue('get' in sample) | |
| 232 | |
| 233 # application/dicom+xml | |
|
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234 self.assertEqual(2, len(re.findall('^--', DoGet(ORTHANC, '/dicom-web/studies', |
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235 headers = { 'Accept' : 'application/dicom+xml' }), |
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236 re.MULTILINE))) |
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237 self.assertEqual(2, len(re.findall('^--', DoPost |
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238 (ORTHANC, '/dicom-web/servers/sample/get', |
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239 { 'Uri' : '/studies', |
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240 'HttpHeaders' : { 'Accept' : 'application/dicom+xml' } |
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241 }), re.MULTILINE))) |
| 84 | 242 |
| 243 # application/dicom+json | |
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244 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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245 headers = { 'Accept' : 'application/dicom+json' }))) |
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246 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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247 { 'Uri' : '/studies', |
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248 'HttpHeaders' : { 'Accept' : 'application/dicom+json' }}))) |
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249 |
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250 # application/json |
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251 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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252 headers = { 'Accept' : 'application/json' }))) |
| 84 | 253 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
| 254 { 'Uri' : '/studies', | |
| 255 'HttpHeaders' : { 'Accept' : 'application/json' }}))) | |
| 256 | |
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257 # application/dicom+json is the default as of OrthancDicomWeb-0.5 |
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258 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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259 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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260 { 'Uri' : '/studies' }))) |
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261 |
| 84 | 262 |
| 263 def test_server_stow(self): | |
| 264 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') | |
| 265 | |
| 266 self.assertRaises(Exception, lambda: | |
| 267 DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
| 268 { 'Resources' : [ 'nope' ]})) # inexisting resource | |
| 269 | |
| 270 self.assertEqual(0, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
| 271 { 'Resources' : [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]}))) # patient | |
| 272 | |
| 273 self.assertEqual(0, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
| 274 { 'Resources' : [ '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' ]}))) # study | |
| 275 | |
| 276 self.assertEqual(0, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
| 277 { 'Resources' : [ '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' ]}))) # series | |
| 278 | |
| 279 self.assertEqual(0, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
| 280 { 'Resources' : [ 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ]}))) # instance | |
| 281 | |
| 282 self.assertEqual(0, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
| 283 { 'Resources' : [ | |
| 284 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 285 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 286 '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285', | |
| 287 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ]}))) # altogether | |
| 288 | |
| 289 | |
| 290 def test_server_retrieve(self): | |
| 291 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') | |
| 292 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0002.dcm') | |
| 293 UploadInstance(ORTHANC, 'Knee/T2/IM-0001-0001.dcm') | |
| 294 | |
| 295 self.assertRaises(Exception, lambda: | |
| 296 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 297 { 'Resources' : [ { 'Study' : 'nope' } ]})) # inexisting resource | |
| 298 | |
| 299 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 300 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881' } ] }) | |
| 301 self.assertEqual(3, len(t['Instances'])) | |
| 302 | |
| 303 # Missing "Study" field | |
| 304 self.assertRaises(Exception, lambda: | |
| 305 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 306 { 'Resources' : [ { 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ]})) | |
| 307 | |
| 308 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 309 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 310 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
| 311 self.assertEqual(2, len(t['Instances'])) | |
| 312 | |
| 313 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 314 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 315 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' } ] }) | |
| 316 self.assertEqual(1, len(t['Instances'])) | |
| 317 | |
| 318 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 319 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 320 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' }, | |
| 321 { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 322 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
| 323 self.assertEqual(3, len(t['Instances'])) | |
| 324 | |
| 325 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 326 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 327 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350', | |
| 328 'Instance' : '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' } ] }) | |
| 329 self.assertEqual(1, len(t['Instances'])) | |
| 330 | |
| 331 | |
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332 def test_bitbucket_issue_53(self): |
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333 # DICOMWeb plugin support for "limit" and "offset" parameters in QIDO-RS |
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334 # https://bitbucket.org/sjodogne/orthanc/issues/53 |
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335 |
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336 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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337 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
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338 |
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339 brainix = '2.16.840.1.113669.632.20.1211.10000357775' |
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340 knee = '2.16.840.1.113669.632.20.121711.10000160881' |
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341 |
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342 a = DoGet(ORTHANC, '/dicom-web/studies', |
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343 headers = { 'accept' : 'application/json' }) |
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344 self.assertEqual(2, len(a)) |
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345 |
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346 b = [] |
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347 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1', |
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348 headers = { 'accept' : 'application/json' }) |
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349 self.assertEqual(1, len(a)) |
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350 b.append(a[0]['0020000D']['Value'][0]) |
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351 |
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352 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1&offset=1', |
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353 headers = { 'accept' : 'application/json' }) |
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354 self.assertEqual(1, len(a)) |
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355 b.append(a[0]['0020000D']['Value'][0]) |
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356 |
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357 self.assertTrue(brainix in b) |
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358 self.assertTrue(knee in b) |
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359 |
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360 |
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361 def test_bitbucket_issue_111(self): |
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362 # Wrong serialization of empty values |
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363 # https://bitbucket.org/sjodogne/orthanc/issues/111 |
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364 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/3/ |
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365 |
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366 # According to the standard, section F.2.5 |
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367 # (http://dicom.nema.org/medical/dicom/current/output/chtml/part18/sect_F.2.5.html), |
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368 # null values behave as follows: If an attribute is present in |
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369 # DICOM but empty (i.e., Value Length is 0), it shall be |
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370 # preserved in the DICOM JSON attribute object containing no |
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371 # "Value", "BulkDataURI" or "InlineBinary". |
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372 # https://bitbucket.org/sjodogne/orthanc/issues/111/qido-rs-wrong-serialization-of-empty |
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373 |
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374 UploadInstance(ORTHANC, 'Issue111.dcm') |
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375 |
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376 # Test WADO-RS |
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377 a = DoGet(ORTHANC, '/dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.30185.1551199973.371589/metadata') |
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378 self.assertEqual(1, len(a)) |
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379 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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380 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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381 self.assertEqual('SH', a[0]['00080050']['vr']) |
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382 |
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383 # Test QIDO-RS |
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384 a = DoGet(ORTHANC, '/dicom-web/studies') |
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385 self.assertEqual(1, len(a)) |
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386 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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387 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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388 self.assertEqual('SH', a[0]['00080050']['vr']) |
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389 |
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390 |
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391 def test_wado_hierarchy(self): |
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392 def CheckJson(uri, headers = {}): |
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393 with open(GetDatabasePath('DummyCT.json'), 'r') as f: |
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394 expected = json.loads(f.read()) |
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395 actual = DoGet(ORTHANC, uri, headers) |
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396 self.assertEqual(1, len(actual)) |
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397 AssertAlmostEqualRecursive(self, expected, actual[0]) |
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398 |
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399 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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400 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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401 series = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394' |
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402 instance = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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403 |
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404 URI = '/dicom-web/studies/%s/series/%s/instances/%s/metadata' |
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405 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, instance), |
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406 headers = { 'accept' : 'application/nope' })) |
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407 |
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408 CheckJson(URI % (study, series, instance), headers = { 'accept' : 'application/dicom+json' }) |
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409 CheckJson('/dicom-web/studies/%s/series/%s/metadata' % (study, series)) |
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410 CheckJson('/dicom-web/studies/%s/metadata' % study) |
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411 |
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412 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % ('nope', series, instance))) |
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413 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, 'nope', instance))) |
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414 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, 'nope'))) |
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415 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % ('nope', series))) |
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416 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % (study, 'nope'))) |
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417 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % 'nope')) |
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418 |
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419 |
| 228 | 420 def test_wado_pixel_data(self): |
| 421 orthanc = UploadInstance(ORTHANC, 'Issue29.dcm') ['ID'] | |
| 422 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 423 self.assertEqual(1, len(a)) | |
| 424 url = a[0]['00081190']['Value'][0] | |
| 425 | |
| 426 prefix = 'http://localhost:8042' | |
| 427 self.assertTrue(url.startswith(prefix)) | |
| 428 | |
| 429 b = DoGet(ORTHANC, url[len(prefix):] + '/metadata') | |
| 430 self.assertEqual('OB', b[0]['7FE00010']['vr']) | |
| 431 self.assertEqual(2, len(b[0]['7FE00010'])) | |
| 432 self.assertTrue('BulkDataURI' in b[0]['7FE00010']) | |
| 433 | |
| 434 url = b[0]['7FE00010']['BulkDataURI'] | |
| 435 self.assertTrue(url.startswith(prefix)) | |
| 436 | |
| 437 p = DoGetMultipart(ORTHANC, url[len(prefix):]) | |
| 438 print(p) | |
| 439 print(len(p)) | |
| 440 for i in len(p): | |
| 441 print(len(p[i])) | |
| 442 | |
| 443 self.assertEqual(2, len(p)) # There are 2 fragments in this image | |
| 444 self.assertEqual(4, len(p[0])) | |
| 445 self.assertEqual(114486, len(p[1])) | |
| 446 | |
| 447 | |
| 448 def test_wado_hierarchy_bulk(self): | |
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449 def CheckBulk(value, bulk): |
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450 self.assertEqual(2, len(value)) |
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451 self.assertTrue('BulkDataURI' in value) |
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452 self.assertTrue('vr' in value) |
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453 self.assertEqual(value['BulkDataURI'], bulk) |
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454 |
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455 orthanc = UploadInstance(ORTHANC, 'PrivateTags.dcm') ['ID'] |
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456 study = '1.2.840.113619.2.115.147416.1094281639.0.29' |
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457 series = '1.2.840.113619.2.115.147416.1094281639.0.30' |
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458 sop = '1.2.840.113619.2.115.147416.1094281639.0.38' |
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459 |
| 228 | 460 # WARNING: This test will fail on Orthanc <= 1.5.5, because |
| 461 # the following fix is not included yet: | |
| 462 # https://bitbucket.org/sjodogne/orthanc/commits/b88937ef597b33c4387a546c751827019bcdc205 | |
| 463 | |
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464 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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465 self.assertEqual(1, len(a)) |
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466 |
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467 BASE_URI = '/dicom-web/studies/%s/series/%s/instances/%s/bulk' % (study, series, sop) |
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468 BASE_URL = 'http://localhost:8042%s' % BASE_URI |
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469 |
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470 self.assertEqual(2, len(a[0]['60031010']['Value'])) |
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471 CheckBulk(a[0]['60031010']['Value'][0]['60031011'], '%s/60031010/1/60031011' % BASE_URL) |
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472 CheckBulk(a[0]['60031010']['Value'][1]['60031011'], '%s/60031010/2/60031011' % BASE_URL) |
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473 CheckBulk(a[0]['7FE00010'], '%s/7fe00010' % BASE_URL) |
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474 |
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475 b = DoGetRaw(ORTHANC, '/instances/%s/content/6003-1010/0/6003-1011' % orthanc) [1] |
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476 c = DoGetMultipart(ORTHANC, '%s/60031010/1/60031011' % BASE_URI) |
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477 |
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478 self.assertEqual(12288, len(b)) |
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479 self.assertEqual(1, len(c)) |
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480 self.assertEqual(b, c[0]) |
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481 |
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482 |
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483 def test_bitbucket_issue_112(self): |
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484 # Wrong serialization of number values |
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485 # https://bitbucket.org/sjodogne/orthanc/issues/112 |
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486 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/4/ |
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487 |
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488 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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489 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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490 |
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491 # This is the WADO-RS testing |
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492 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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493 self.assertEqual(1, len(a)) |
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494 self.assertEqual('IS', a[0]['00180091']['vr']) # EchoTrainLength |
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495 |
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496 if (sys.version_info >= (3, 0)): |
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497 types = (int) |
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498 else: |
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499 types = (int, long) |
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500 |
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501 b = a[0]['00180091']['Value'][0] |
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502 self.assertTrue(isinstance(b, types)) |
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503 self.assertEqual(10, b) |
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504 |
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505 # This is the QIDO-RS testing |
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506 a = DoGet(ORTHANC, '/dicom-web/studies') |
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507 self.assertEqual(1, len(a)) |
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508 self.assertEqual('IS', a[0]['00201208']['vr']) # Number of Study Related Instances |
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509 |
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510 b = a[0]['00201208']['Value'][0] |
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511 self.assertTrue(isinstance(b, types)) |
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512 self.assertEqual(1, b) |
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513 |
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514 |
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515 def test_bitbucket_issue_113(self): |
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516 # Wrong serialization of PN VR |
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517 # https://bitbucket.org/sjodogne/orthanc/issues/113 |
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518 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/2/ |
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519 |
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520 UploadInstance(ORTHANC, 'Encodings/DavidClunie/SCSX1') |
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521 study = '1.3.6.1.4.1.5962.1.2.0.1175775771.5711.0' |
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522 |
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523 # This is the WADO-RS testing |
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524 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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525 self.assertEqual(1, len(a)) |
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526 |
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527 pn = a[0]['00100010'] # Patient name |
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528 self.assertEqual('PN', pn['vr']) |
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529 self.assertEqual(1, len(pn['Value'])) |
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530 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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531 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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532 |
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533 # This is the QIDO-RS testing |
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534 a = DoGet(ORTHANC, '/dicom-web/studies') |
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535 self.assertEqual(1, len(a)) |
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536 |
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537 pn = a[0]['00100010'] # Patient name |
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538 self.assertEqual('PN', pn['vr']) |
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539 self.assertEqual(1, len(pn['Value'])) |
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540 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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541 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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542 |
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222
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543 |
| 225 | 544 def test_bitbucket_issue_96(self): |
| 545 # WADO-RS RetrieveFrames rejects valid accept headers | |
| 546 # https://bitbucket.org/sjodogne/orthanc/issues/96 | |
| 547 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/5/ | |
| 548 | |
| 228 | 549 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm') |
| 225 | 550 |
| 551 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 552 self.assertEqual(1, len(a)) | |
| 228 | 553 self.assertEqual(256, a[0]['00280010']['Value'][0]) # Rows |
| 554 self.assertEqual(256, a[0]['00280011']['Value'][0]) # Columns | |
| 555 self.assertEqual(16, a[0]['00280100']['Value'][0]) # Bits allocated | |
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556 |
| 225 | 557 url = a[0]['00081190']['Value'][0] |
| 558 | |
| 559 prefix = 'http://localhost:8042' | |
| 560 self.assertTrue(url.startswith(prefix)) | |
| 561 uri = url[len(prefix):] | |
| 562 | |
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563 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 0))) |
| 228 | 564 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 2))) |
| 565 | |
| 566 print('%s/frames/%d' % (uri, 1)) | |
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567 b = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1)) |
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568 self.assertEqual(1, len(b)) |
| 228 | 569 self.assertEqual(256 * 256 * 2, len(b[0])) |
| 225 | 570 |
| 228 | 571 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
|
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572 headers = { 'Accept' : 'multipart/related; type=application/octet-stream' }) |
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573 self.assertEqual(1, len(c)) |
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574 self.assertEqual(b[0], c[0]) |
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575 |
| 228 | 576 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
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577 headers = { 'Accept' : 'multipart/related; type="application/octet-stream"' }) |
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578 self.assertEqual(1, len(c)) |
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579 self.assertEqual(b[0], c[0]) |
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580 |
| 228 | 581 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
| 582 headers = { 'Accept' : 'multipart/related; type="nope"' })) | |
| 583 | |
| 584 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
| 585 headers = { 'Accept' : 'multipart/related; type=nope' })) | |
| 586 | |
| 587 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
| 588 headers = { 'Accept' : 'nope' })) | |
| 589 | |
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590 |
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591 def test_qido_fields(self): |
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592 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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593 |
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594 a = DoGet(ORTHANC, '/dicom-web/studies') |
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595 self.assertEqual(1, len(a)) |
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596 self.assertFalse('00280010' in a[0]) # Rows |
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597 |
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598 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=Rows') |
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599 self.assertEqual(1, len(a)) |
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600 self.assertTrue('00280010' in a[0]) |
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601 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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602 |
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603 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=128') |
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604 self.assertEqual(0, len(a)) |
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605 |
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606 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=512') |
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607 self.assertEqual(1, len(a)) |
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608 self.assertTrue('00280010' in a[0]) |
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609 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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610 |
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611 |
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612 def test_stow_errors(self): |
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613 # Pushing an instance to a study that is not its parent |
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614 a = SendStow(ORTHANC, args.dicomweb + '/studies/nope', GetDatabasePath('Phenix/IM-0001-0001.dcm')) |
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615 self.assertEqual(3, len(a)) |
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616 self.assertTrue('00080005' in a) |
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617 self.assertEqual('CS', a['00080005']['vr']) |
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618 self.assertTrue('00081198' in a) |
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619 self.assertEqual('SQ', a['00081198']['vr']) |
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620 self.assertEqual(1, len(['00081198'])) |
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621 self.assertTrue('00081199' in a) |
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622 self.assertEqual('SQ', a['00081199']['vr']) |
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623 self.assertEqual(1, len(['00081199'])) |
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624 |
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625 # Pushing an instance with missing tags |
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626 a = SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dcm')) |
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627 self.assertEqual(3, len(a)) |
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628 self.assertTrue('00080005' in a) |
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629 self.assertEqual('CS', a['00080005']['vr']) |
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630 self.assertTrue('00081198' in a) |
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631 self.assertEqual('SQ', a['00081198']['vr']) |
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632 self.assertEqual(1, len(['00081198'])) |
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633 self.assertTrue('00081199' in a) |
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634 self.assertEqual('SQ', a['00081199']['vr']) |
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635 self.assertEqual(1, len(['00081199'])) |
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636 |
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637 # Pushing a file that is not in the DICOM format |
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638 a = SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dump')) |
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639 self.assertEqual(3, len(a)) |
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640 self.assertTrue('00080005' in a) |
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641 self.assertEqual('CS', a['00080005']['vr']) |
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642 self.assertTrue('00081198' in a) |
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643 self.assertEqual('SQ', a['00081198']['vr']) |
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644 self.assertEqual(1, len(['00081198'])) |
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645 self.assertTrue('00081199' in a) |
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646 self.assertEqual('SQ', a['00081199']['vr']) |
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647 self.assertEqual(1, len(['00081199'])) |
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648 |
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649 |
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650 try: |
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651 print('\nStarting the tests...') |
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652 unittest.main(argv = [ sys.argv[0] ] + args.options) |
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653 |
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654 finally: |
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655 print('\nDone') |