Mercurial > hg > orthanc-tests

annotate Plugins/CGet/Run.py @ 353:49f2943544eb

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 03 Dec 2020 15:59:08 +0100
parents c56eaf5928f0
children 79ce0f7a9714
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1 #!/usr/bin/python
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2
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3 # Orthanc - A Lightweight, RESTful DICOM Store
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4 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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5 # Department, University Hospital of Liege, Belgium
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6 # Copyright (C) 2017-2020 Osimis S.A., Belgium
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7 #
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8 # This program is free software: you can redistribute it and/or
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9 # modify it under the terms of the GNU General Public License as
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10 # published by the Free Software Foundation, either version 3 of the
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11 # License, or (at your option) any later version.
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12 #
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13 # This program is distributed in the hope that it will be useful, but
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14 # WITHOUT ANY WARRANTY; without even the implied warranty of
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15 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 # General Public License for more details.
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17 #
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18 # You should have received a copy of the GNU General Public License
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19 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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20
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21
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22
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23 import argparse
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24 import os
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25 import pprint
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26 import re
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27 import sys
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28 import unittest
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29
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30 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests'))
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31 from Toolbox import *
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32
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33
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34 ##
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35 ## Parse the command-line arguments
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36 ##
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37
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38 parser = argparse.ArgumentParser(description = 'Run the integration tests for the patient recycling behavior.')
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39
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40 parser.add_argument('--server',
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41 default = 'localhost',
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42 help = 'Address of the Orthanc server to test')
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43 parser.add_argument('--aet',
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44 default = 'ORTHANC',
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45 help = 'AET of the Orthanc instance to test')
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46 parser.add_argument('--dicom',
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47 type = int,
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48 default = 4242,
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49 help = 'DICOM port of the Orthanc instance to test')
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50 parser.add_argument('--rest',
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51 type = int,
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52 default = 8042,
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53 help = 'Port to the REST API')
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54 parser.add_argument('--username',
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55 default = 'alice',
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56 help = 'Username to the REST API')
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57 parser.add_argument('--password',
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58 default = 'orthanctest',
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59 help = 'Password to the REST API')
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60 parser.add_argument('--force', help = 'Do not warn the user',
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61 action = 'store_true')
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62 parser.add_argument('options', metavar = 'N', nargs = '*',
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63 help='Arguments to Python unittest')
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64
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65 args = parser.parse_args()
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66
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67
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68 ##
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69 ## Configure the testing context
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70 ##
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71
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72 if not args.force:
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73 print("""
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74 WARNING: This test will remove all the content of your
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75 Orthanc instance running on %s!
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76
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77 Are you sure ["yes" to go on]?""" % args.server)
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78
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79 if sys.stdin.readline().strip() != 'yes':
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80 print('Aborting...')
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81 exit(0)
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82
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83
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84 ORTHANC = DefineOrthanc(server = args.server,
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85 username = args.username,
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86 password = args.password,
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87 restPort = args.rest,
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88 aet = args.aet,
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89 dicomPort = args.dicom)
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90
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91
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92 ##
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93 ## pydicom toolbox
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94 ##
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95
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96 from pydicom.dataset import Dataset
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97 from pynetdicom import (
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98 AE,
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99 evt,
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100 build_role,
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101 debug_logger,
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102 )
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103 from pynetdicom.sop_class import *
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104
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105 def ExecuteCGet(orthanc, dataset, sopClass, callback):
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106 handlers = [(evt.EVT_C_STORE, callback)]
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107
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108 ae = AE(ae_title = 'ORTHANCTEST')
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109
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110 ae.add_requested_context(PatientRootQueryRetrieveInformationModelGet)
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111 ae.add_requested_context(sopClass)
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112 role = build_role(sopClass, scp_role = True, scu_role = True)
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113
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114 assoc = ae.associate(orthanc['Server'], orthanc['DicomPort'],
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115 ext_neg = [role], evt_handlers = handlers)
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116
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117 if assoc.is_established:
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118 responses = assoc.send_c_get(
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119 dataset,
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120 PatientRootQueryRetrieveInformationModelGet,
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121 msg_id = 9999,
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122 )
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123
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124 # Only report the result of the last sub-operation
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125 last = None
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126
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127 for (result, identifier) in responses:
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128 if result:
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129 last = result
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130 else:
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131 assoc.release()
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132 raise Exception('Connection timed out, was aborted or received invalid response')
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133
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134 assoc.release()
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135 return last
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136 else:
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137 raise Exception('Association rejected, aborted or never connected')
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138
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139
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140
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141
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142
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143 ##
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144 ## The tests
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145 ##
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146 ## IMPORTANT RESOURCES:
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147 ## http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.3.html#table_C.4-3
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148 ## http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.3.3.html
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149 ##
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150
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151
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152 def DefaultCallback(event):
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153 to_match = PatientRootQueryRetrieveInformationModelGet
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154 cxs = [cx for cx in event.assoc.accepted_contexts if cx.abstract_syntax == to_match]
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155 if len(cxs) != 1:
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156 raise Exception()
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157 else:
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158 return 0x0000
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159
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160
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161
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162 class Orthanc(unittest.TestCase):
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163 def setUp(self):
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164 if (sys.version_info >= (3, 0)):
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165 # Remove annoying warnings about unclosed socket in Python 3
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166 import warnings
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167 warnings.simplefilter('ignore', ResourceWarning)
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168
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169 DropOrthanc(ORTHANC)
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170
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171
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172 def test_success(self):
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173 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm')
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174 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm')
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175
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176 dataset = Dataset()
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177 dataset.QueryRetrieveLevel = 'STUDY'
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178 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775'
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179
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180 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, DefaultCallback)
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181
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182 self.assertEqual(0x0000, result[0x00000900].value) # Status - Success
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183 self.assertEqual(2, result[0x00001021].value) # Completed sub-operations
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184 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations
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185 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations
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186
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187 # "Warning, Failure, or Success shall not contain the Number
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188 # of Remaining Sub-operations Attribute."
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189 self.assertFalse(0x00001020 in result) # Remaining sub-operations
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190
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191
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192 def test_some_failure(self):
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193 # Failure in 1 on 2 images
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194 def Callback(event):
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195 Callback.count += 1
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196
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197 if Callback.count == 1:
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198 return 0xA702 # Refused: Out of resources - Unable to perform sub-operations
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199 elif Callback.count == 2:
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200 return 0x0000
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201 else:
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202 raise Exception('')
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203
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204 Callback.count = 0 # Static variable of function "Callback"
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205
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206 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm')
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207 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0002.dcm')
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208
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209 dataset = Dataset()
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210 dataset.QueryRetrieveLevel = 'STUDY'
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211 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775'
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212
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213 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback)
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214
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215 # Fixed in Orthanc 1.8.1. "From what I read from the DICOM
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216 # standard the C-GET should at least return a warning
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217 # (0xB000), see C.4.3.1.4 Status as one or more sub-operations
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218 # failed."
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219 # https://groups.google.com/g/orthanc-users/c/tS826iEzHb0/m/KzHZk61tAgAJ
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220 # https://github.com/pydicom/pynetdicom/issues/552#issuecomment-712477451
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221
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222 self.assertEqual(0xB000, result[0x00000900].value) # Status - One or more Failures or Warnings
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223 self.assertEqual(1, result[0x00001021].value) # Completed sub-operations
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224 self.assertEqual(1, result[0x00001022].value) # Failed sub-operations
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225 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations
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226
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227 # "Warning, Failure, or Success shall not contain the Number
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228 # of Remaining Sub-operations Attribute."
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229 self.assertFalse(0x00001020 in result) # Remaining sub-operations
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230
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231
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232 def test_all_failure(self):
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233 def Callback(event):
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234 return 0xA702 # Refused: Out of resources - Unable to perform sub-operations
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235
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236 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm')
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237 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0002.dcm')
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238
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239 dataset = Dataset()
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240 dataset.QueryRetrieveLevel = 'STUDY'
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241 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775'
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242
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243 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback)
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244
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245 # Must return "Failure or Refused if all sub-operations were unsuccessful"
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246 # http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.3.3.html
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247
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248 self.assertEqual(0xA702, result[0x00000900].value) # Status - Unable to perform sub-operations
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249 self.assertEqual(0, result[0x00001021].value) # Completed sub-operations
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250 self.assertEqual(2, result[0x00001022].value) # Failed sub-operations
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251 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations
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252
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253 # "Warning, Failure, or Success shall not contain the Number
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254 # of Remaining Sub-operations Attribute."
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255 self.assertFalse(0x00001020 in result) # Remaining sub-operations
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256
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257
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258 def test_warning(self):
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259 def Callback(event):
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260 return 0xB000 # Sub-operations Complete - One or more Failures or Warnings
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261
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262 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm')
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263
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264 dataset = Dataset()
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265 dataset.QueryRetrieveLevel = 'STUDY'
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266 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775'
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267
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268 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback)
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269
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270 self.assertEqual(0xB000, result[0x00000900].value) # Status - One or more Failures or Warnings
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271 self.assertEqual(0, result[0x00001021].value) # Completed sub-operations
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272 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations
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273 self.assertEqual(1, result[0x00001023].value) # Warning sub-operations
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274
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275 # "Warning, Failure, or Success shall not contain the Number
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276 # of Remaining Sub-operations Attribute."
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277 self.assertFalse(0x00001020 in result) # Remaining sub-operations
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278
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279
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280 def test_missing(self):
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281 dataset = Dataset()
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282 dataset.QueryRetrieveLevel = 'STUDY'
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283 dataset.StudyInstanceUID = 'nope'
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284
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285 result = ExecuteCGet(ORTHANC, dataset, UltrasoundImageStorage, DefaultCallback)
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286
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287 self.assertEqual(0xC000, result[0x00000900].value) # Status - Failed: Unable to process
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288 self.assertEqual(0, result[0x00001021].value) # Completed sub-operations
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289 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations
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290 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations
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291
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292 # "Warning, Failure, or Success shall not contain the Number
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293 # of Remaining Sub-operations Attribute."
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294 self.assertFalse(0x00001020 in result) # Remaining sub-operations
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295
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296
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297 def test_cancel(self):
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298 # Fixed in Orthanc 1.8.1.
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299 # https://groups.google.com/g/orthanc-users/c/tS826iEzHb0/m/QbPw6XPZAgAJ
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300 # https://github.com/pydicom/pynetdicom/issues/553#issuecomment-713164041
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301
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302 def Callback(event):
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303 Callback.count += 1
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304
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305 if Callback.count == 1:
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306 return 0x0000
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307 elif Callback.count == 2:
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308 to_match = PatientRootQueryRetrieveInformationModelGet
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309 cxs = [cx for cx in event.assoc.accepted_contexts if cx.abstract_syntax == to_match]
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310 cx_id = cxs[0].context_id
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311 event.assoc.send_c_cancel(9999, cx_id)
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312 return 0x0000 # Success
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313 else:
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314 raise Exception('')
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315
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316 Callback.count = 0 # Static variable of function "Callback"
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317
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318 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm')
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319 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0002.dcm')
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320 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm')
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321
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322 dataset = Dataset()
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323 dataset.QueryRetrieveLevel = 'STUDY'
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324 dataset.StudyInstanceUID = '2.16.840.1.113669.632.20.1211.10000357775'
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325
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326 result = ExecuteCGet(ORTHANC, dataset, MRImageStorage, Callback)
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327
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328 self.assertEqual(0xfe00, result[0x00000900].value) # Status - Sub-operations terminated due to Cancel Indication
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329 self.assertEqual(2, result[0x00001020].value) # Remaining sub-operations
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330 self.assertEqual(1, result[0x00001021].value) # Completed sub-operations
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331 self.assertEqual(0, result[0x00001022].value) # Failed sub-operations
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332 self.assertEqual(0, result[0x00001023].value) # Warning sub-operations
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333
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334
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335
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336 try:
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337 print('\nStarting the tests...')
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338 unittest.main(argv = [ sys.argv[0] ] + args.options)
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339
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340 finally:
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341 print('\nDone')