Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 21:2a29bcff60a7
tests of image decoding
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Mon, 22 Jun 2015 14:14:37 +0200 |
| parents | 16c37933384d |
| children | 8f4b70c89467 |
| rev | line source |
|---|---|
| 3 | 1 # Orthanc - A Lightweight, RESTful DICOM Store |
| 2 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics | |
| 3 # Department, University Hospital of Liege, Belgium | |
| 4 # | |
| 5 # This program is free software: you can redistribute it and/or | |
| 6 # modify it under the terms of the GNU General Public License as | |
| 7 # published by the Free Software Foundation, either version 3 of the | |
| 8 # License, or (at your option) any later version. | |
| 9 # | |
| 10 # This program is distributed in the hope that it will be useful, but | |
| 11 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 13 # General Public License for more details. | |
| 14 # | |
| 15 # You should have received a copy of the GNU General Public License | |
| 16 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 17 | |
| 18 | |
| 14 | 19 import tempfile |
| 3 | 20 import unittest |
| 21 | |
| 11 | 22 from PIL import ImageChops |
| 3 | 23 from Toolbox import * |
| 13 | 24 from xml.dom import minidom |
| 3 | 25 |
| 26 _LOCAL = None | |
| 27 _REMOTE = None | |
| 28 | |
| 29 | |
| 30 def SetOrthancParameters(local, remote): | |
| 31 global _LOCAL, _REMOTE | |
| 32 _LOCAL = local | |
| 33 _REMOTE = remote | |
| 34 | |
| 35 | |
| 14 | 36 def ExtractDicomTags(rawDicom, tags): |
| 37 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 38 f.write(rawDicom) | |
| 39 f.flush() | |
| 40 data = subprocess.check_output([ 'dcm2xml', f.name ]) | |
| 41 | |
| 42 result = [] | |
| 43 for tag in tags: | |
| 44 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 45 if match == None: | |
| 46 result.append('') | |
| 47 else: | |
| 48 result.append(match.group(1)) | |
| 49 | |
| 50 return result | |
| 51 | |
| 52 | |
| 15 | 53 def InstallLuaScript(path): |
| 54 with open(GetDatabasePath(path), 'r') as f: | |
| 55 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
| 56 | |
| 57 | |
| 58 def UninstallLuaCallbacks(): | |
| 59 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
| 60 | |
| 61 | |
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62 def CompareLists(a, b): |
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63 if len(a) != len(b): |
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64 return False |
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65 |
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66 for i in range(len(a)): |
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67 d = a[i] - b[i] |
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68 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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69 return False |
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70 |
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71 return True |
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72 |
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73 |
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74 |
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75 |
| 15 | 76 |
| 3 | 77 class Orthanc(unittest.TestCase): |
| 78 def setUp(self): | |
| 79 DropOrthanc(_LOCAL) | |
| 80 DropOrthanc(_REMOTE) | |
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81 #print "In test", self._testMethodName |
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82 |
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83 def AssertSameImages(self, truth, url): |
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84 im = GetImage(_REMOTE, url) |
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85 self.assertTrue(CompareLists(truth, im.getdata())) |
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86 |
| 3 | 87 |
| 88 def test_system(self): | |
| 89 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
| 90 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 91 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 92 | |
| 93 def test_upload(self): | |
| 94 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 95 self.assertEqual('Success', u['Status']) | |
| 96 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 97 self.assertEqual('AlreadyStored', u['Status']) | |
| 98 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 99 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 100 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 101 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 102 | |
| 103 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
| 104 self.assertEqual('20070101', i['StudyDate']) | |
| 105 | |
| 106 | |
| 5 | 107 def test_upload_2(self): |
| 3 | 108 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 109 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 110 self.assertEqual(i, instance['ID']) | |
| 111 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 112 instance['MainDicomTags']['SOPInstanceUID']) | |
| 113 | |
| 114 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 115 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 116 series['MainDicomTags']['SeriesInstanceUID']) | |
| 117 | |
| 118 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 119 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 120 study['MainDicomTags']['StudyInstanceUID']) | |
| 121 | |
| 122 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 123 self.assertEqual('ozp00SjY2xG', | |
| 124 patient['MainDicomTags']['PatientID']) | |
| 125 | |
| 126 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 127 self.assertEqual(2472, len(dicom)) | |
| 128 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 129 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 130 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 131 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
| 132 | |
| 133 | |
| 5 | 134 def test_images(self): |
| 135 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 136 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 137 |
| 5 | 138 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 139 self.assertEqual("L", im.mode) | |
| 140 self.assertEqual(512, im.size[0]) | |
| 141 self.assertEqual(358, im.size[1]) | |
| 142 | |
| 143 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 144 self.assertEqual("L", im.mode) | |
| 145 self.assertEqual(512, im.size[0]) | |
| 146 self.assertEqual(358, im.size[1]) | |
| 147 | |
| 148 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 149 self.assertEqual(512, im.size[0]) | |
| 150 self.assertEqual(358, im.size[1]) | |
| 151 | |
| 152 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 153 self.assertEqual("L", im.mode) | |
| 154 self.assertEqual(512, im.size[0]) | |
| 155 self.assertEqual(358, im.size[1]) | |
| 156 | |
| 157 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 158 self.assertEqual("L", im.mode) | |
| 159 self.assertEqual(512, im.size[0]) | |
| 160 self.assertEqual(358, im.size[1]) | |
| 161 | |
| 162 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 163 self.assertEqual(512, im.size[0]) | |
| 164 self.assertEqual(358, im.size[1]) | |
| 165 | |
| 6 | 166 |
| 167 def test_hierarchy(self): | |
| 168 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 169 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 170 UploadFolder(_REMOTE, 'Knee/T1') | |
| 171 UploadFolder(_REMOTE, 'Knee/T2') | |
| 172 | |
| 173 p = DoGet(_REMOTE, '/patients') | |
| 174 s = DoGet(_REMOTE, '/studies') | |
| 175 t = DoGet(_REMOTE, '/series') | |
| 176 self.assertEqual(2, len(p)) | |
| 177 self.assertEqual(2, len(s)) | |
| 178 self.assertEqual(4, len(t)) | |
| 179 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 180 | |
| 181 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 182 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 183 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 184 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 185 | |
| 186 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 187 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 188 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 189 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 190 | |
| 191 self.assertTrue(brainixPatient in p) | |
| 192 self.assertTrue(kneePatient in p) | |
| 193 self.assertTrue(brainixStudy in s) | |
| 194 self.assertTrue(kneeStudy in s) | |
| 195 self.assertTrue(brainixEpi in t) | |
| 196 self.assertTrue(brainixFlair in t) | |
| 197 self.assertTrue(kneeT1 in t) | |
| 198 self.assertTrue(kneeT2 in t) | |
| 199 | |
| 200 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 201 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 202 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 203 | |
| 204 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 205 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 206 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 207 | |
| 208 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 209 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 210 | |
| 211 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 212 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 213 | |
| 214 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 215 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 216 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 217 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 218 | |
| 219 for patient in p: | |
| 220 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 221 self.assertEqual(patient, study['ParentPatient']) | |
| 222 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 223 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 224 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 225 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 226 | |
| 227 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 228 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 229 | |
| 230 | |
| 231 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 232 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 233 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 234 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 235 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 236 self.assertEqual(None, r) | |
| 237 | |
| 238 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 239 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 240 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 241 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 242 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 243 self.assertEqual('Study', r['Type']) | |
| 244 self.assertEqual(kneeStudy, r['ID']) | |
| 245 | |
| 246 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 247 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 248 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 249 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 250 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 251 self.assertEqual('Series', r['Type']) | |
| 252 self.assertEqual(kneeT1, r['ID']) | |
| 253 | |
| 254 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 255 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 256 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 257 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 258 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 259 self.assertEqual(None, r) | |
| 260 | |
| 261 DropOrthanc(_REMOTE) | |
| 262 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 263 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 264 |
| 265 | |
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266 def test_multiframe(self): |
| 7 | 267 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 268 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 269 | |
| 270 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 271 self.assertEqual("L", im.mode) | |
| 272 self.assertEqual(512, im.size[0]) | |
| 273 self.assertEqual(512, im.size[1]) | |
| 274 | |
| 275 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 276 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 277 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 278 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 279 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 280 | |
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281 |
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282 def test_changes(self): |
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283 # Check emptiness |
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284 c = DoGet(_REMOTE, '/changes') |
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285 self.assertEqual(0, len(c['Changes'])) |
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286 self.assertEqual(0, c['Last']) |
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287 self.assertTrue(c['Done']) |
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288 c = DoGet(_REMOTE, '/changes?last') |
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289 self.assertEqual(0, len(c['Changes'])) |
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290 self.assertEqual(0, c['Last']) |
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291 self.assertTrue(c['Done']) |
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292 |
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293 # Add 1 instance |
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294 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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295 c = DoGet(_REMOTE, '/changes') |
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296 begin = c['Last'] |
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297 self.assertEqual(4, len(c['Changes'])) |
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298 self.assertTrue(c['Done']) |
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299 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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300 |
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301 c = DoGet(_REMOTE, '/changes?last') |
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302 self.assertEqual(1, len(c['Changes'])) |
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303 self.assertEqual(begin, c['Last']) |
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304 self.assertTrue(c['Done']) |
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305 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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306 self.assertEqual(1, len(c['Changes'])) |
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307 self.assertEqual(begin, c['Last']) |
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308 self.assertTrue(c['Done']) |
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309 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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310 self.assertEqual(1, len(c['Changes'])) |
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311 self.assertEqual(begin - 1, c['Last']) |
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312 self.assertFalse(c['Done']) |
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313 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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314 self.assertEqual(1, len(c['Changes'])) |
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315 self.assertEqual(begin - 2, c['Last']) |
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316 self.assertFalse(c['Done']) |
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317 |
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318 UploadFolder(_REMOTE, 'Knee/T1') |
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319 UploadFolder(_REMOTE, 'Knee/T2') |
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320 since = begin |
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321 countPatients = 0 |
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322 countStudies = 0 |
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323 countSeries = 0 |
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324 countInstances = 0 |
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325 completed = 0 |
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326 while True: |
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327 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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328 since = c['Last'] |
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329 for i in c['Changes']: |
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330 if i['ResourceType'] == 'Instance': |
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331 countInstances += 1 |
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332 if i['ResourceType'] == 'Patient': |
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333 countPatients += 1 |
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334 if i['ResourceType'] == 'Study': |
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335 countStudies += 1 |
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336 if i['ResourceType'] == 'Series': |
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337 countSeries += 1 |
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338 if i['ChangeType'] == 'NewInstance': |
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339 countInstances += 1 |
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340 if i['ChangeType'] == 'NewPatient': |
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341 countPatients += 1 |
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342 if i['ChangeType'] == 'NewStudy': |
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343 countStudies += 1 |
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344 if i['ChangeType'] == 'NewSeries': |
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345 countSeries += 1 |
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346 if i['ChangeType'] == 'CompletedSeries': |
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347 completed += 1 |
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348 self.assertTrue('ID' in i) |
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349 self.assertTrue('Path' in i) |
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350 self.assertTrue('Seq' in i) |
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351 if c['Done']: |
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352 break |
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353 |
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354 self.assertEqual(2 * 50, countInstances) |
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355 self.assertEqual(2 * 1, countPatients) |
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356 self.assertEqual(2 * 1, countStudies) |
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357 self.assertEqual(2 * 2, countSeries) |
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358 self.assertEqual(0, completed) |
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359 |
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|
360 |
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361 def test_archive(self): |
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362 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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363 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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364 |
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365 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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366 self.assertEqual(2, len(z.namelist())) |
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|
367 |
|
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368 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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369 self.assertEqual(2, len(z.namelist())) |
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|
370 |
|
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371 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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372 self.assertEqual(1, len(z.namelist())) |
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373 |
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374 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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375 |
|
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376 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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377 self.assertEqual(2, len(z.namelist())) |
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|
378 |
|
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|
379 |
|
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380 def test_media_archive(self): |
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381 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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382 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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|
383 |
|
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|
384 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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385 self.assertEqual(3, len(z.namelist())) |
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386 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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387 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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388 self.assertTrue('DICOMDIR' in z.namelist()) |
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changeset
|
389 |
|
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changeset
|
390 try: |
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|
391 os.remove('/tmp/DICOMDIR') |
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changeset
|
392 except: |
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changeset
|
393 # The file does not exist |
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changeset
|
394 pass |
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changeset
|
395 |
|
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changeset
|
396 z.extract('DICOMDIR', '/tmp') |
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changeset
|
397 a = subprocess.check_output([ 'dciodvfy', '/tmp/DICOMDIR' ], |
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changeset
|
398 stderr = subprocess.STDOUT).split('\n') |
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changeset
|
399 self.assertEqual(3, len(a)) |
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|
400 self.assertTrue(a[0].startswith('Warning')) |
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changeset
|
401 self.assertEqual('BasicDirectory', a[1]) |
|
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402 self.assertEqual('', a[2]) |
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403 |
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404 a = subprocess.check_output([ 'dcentvfy', '/tmp/DICOMDIR' ], |
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405 stderr = subprocess.STDOUT).split('\n') |
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406 self.assertEqual(1, len(a)) |
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407 self.assertEqual('', a[0]) |
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408 |
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409 a = subprocess.check_output([ 'dcm2xml', '/tmp/DICOMDIR' ]) |
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410 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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411 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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412 |
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413 os.remove('/tmp/DICOMDIR') |
| 10 | 414 |
| 415 | |
| 416 def test_protection(self): | |
| 417 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 418 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 419 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 420 a = DoGet(_REMOTE, '/patients')[0] | |
| 421 b = DoGet(_REMOTE, '/patients')[1] | |
| 422 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 423 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 424 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 425 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 426 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 427 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 428 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 429 | |
| 430 | |
| 12 | 431 def test_raw_tags(self): |
| 10 | 432 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 433 | |
| 434 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 435 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 436 | |
| 437 s = '/instances/%s/content/' % i | |
| 438 | |
| 439 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 440 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 441 | |
| 442 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 443 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 444 | |
| 445 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 446 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 447 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 448 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 449 | |
| 450 for i in DoGet(_REMOTE, '/instances'): | |
| 451 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 452 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 453 | |
| 454 | |
| 455 def test_raw_tags_mdn(self): | |
| 456 # Bug reported by Cyril Paulus | |
| 457 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 458 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 459 | |
| 460 | |
| 461 def test_modify_instance(self): | |
| 462 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 463 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 464 json.dumps({ | |
| 465 "Replace" : { | |
| 466 "PatientName" : "hello", | |
| 467 #"PatientID" : "world" | |
| 468 }, | |
| 469 "Remove" : [ "StationName" ], | |
| 470 "RemovePrivateTags" : None | |
| 471 }), | |
| 472 'application/json') | |
| 473 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 474 | |
| 475 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 476 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 477 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) | |
| 478 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag | |
| 479 | |
| 480 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 481 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 482 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 483 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 484 | |
| 485 | |
| 486 def test_modify_series(self): | |
| 487 # Upload 4 images from the same series | |
| 488 for i in range(4): | |
| 489 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 490 | |
| 491 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 492 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 493 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 494 'application/json')['ID'] | |
| 495 | |
| 496 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 497 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 498 self.assertEqual(4, len(instances)) | |
| 499 for i in instances: | |
| 500 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 501 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 502 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 503 | |
| 504 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 505 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 506 | |
| 507 | |
| 508 def test_modify_study(self): | |
| 509 # Upload 4 images from the 2 series of the same study | |
| 510 for i in range(4): | |
| 511 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 512 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 513 | |
| 514 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 515 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 516 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 517 'application/json')['ID'] | |
| 518 | |
| 519 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 520 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 521 self.assertEqual(2, len(series)) | |
| 522 for s in series: | |
| 523 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 524 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 525 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 526 | |
| 527 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 528 for i in instances: | |
| 529 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 530 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 531 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 532 | |
| 533 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 534 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 535 | |
| 536 | |
| 537 def test_anonymize_series(self): | |
| 538 # Upload 4 images from the same series | |
| 539 for i in range(4): | |
| 540 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 541 | |
| 542 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 543 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 544 '{}', | |
| 545 'application/json')['ID'] | |
| 546 | |
| 547 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 548 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 549 self.assertEqual(4, len(instances)) | |
| 550 for i in instances: | |
| 551 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 552 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 553 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 554 | |
| 555 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 556 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 557 | |
| 558 | |
| 559 def test_anonymize_study(self): | |
| 560 # Upload 4 images from the 2 series of the same study | |
| 561 for i in range(4): | |
| 562 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 563 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 564 | |
| 565 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 566 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 567 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 568 'application/json')['ID'] | |
| 569 | |
| 570 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 571 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 572 self.assertEqual(2, len(series)) | |
| 573 for s in series: | |
| 574 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 575 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 576 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 577 | |
| 578 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 579 for i in instances: | |
| 580 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 581 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 582 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 583 | |
| 584 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 585 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 586 |
| 587 | |
| 588 | |
| 589 def test_storescu(self): | |
| 590 # Check emptiness | |
| 591 e = DoGet(_REMOTE, '/exports') | |
| 592 self.assertEqual(0, len(e['Exports'])) | |
| 593 self.assertEqual(0, e['Last']) | |
| 594 self.assertTrue(e['Done']) | |
| 595 e = DoGet(_REMOTE, '/exports?last') | |
| 596 self.assertEqual(0, len(e['Exports'])) | |
| 597 self.assertEqual(0, e['Last']) | |
| 598 self.assertTrue(e['Done']) | |
| 599 | |
| 600 # Add 1 instance | |
| 601 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 602 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 603 | |
| 604 # Export the instance | |
| 605 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 606 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 607 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 608 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 609 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 610 | |
| 611 e = DoGet(_REMOTE, '/exports') | |
| 612 self.assertEqual(1, len(e['Exports'])) | |
| 613 self.assertTrue(e['Done']) | |
| 614 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 615 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 616 self.assertEqual(1, len(e['Exports'])) | |
| 617 self.assertTrue(e['Done']) | |
| 618 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 619 e = DoGet(_REMOTE, '/exports?last') | |
| 620 self.assertEqual(1, len(e['Exports'])) | |
| 621 self.assertTrue(e['Done']) | |
| 622 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 623 seqInstance = e['Last'] | |
| 624 | |
| 625 # Export the series | |
| 626 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 627 | |
| 628 e = DoGet(_REMOTE, '/exports') | |
| 629 self.assertEqual(2, len(e['Exports'])) | |
| 630 self.assertTrue(e['Done']) | |
| 631 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 632 seqSeries = e['Last'] | |
| 633 self.assertNotEqual(seqInstance, seqSeries) | |
| 634 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 635 self.assertEqual(1, len(e['Exports'])) | |
| 636 self.assertFalse(e['Done']) | |
| 637 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 638 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 639 self.assertEqual(1, len(e['Exports'])) | |
| 640 self.assertTrue(e['Done']) | |
| 641 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 642 e = DoGet(_REMOTE, '/exports?last') | |
| 643 self.assertEqual(1, len(e['Exports'])) | |
| 644 self.assertTrue(e['Done']) | |
| 645 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 646 | |
| 647 # Export the study | |
| 648 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 649 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 650 | |
| 651 # Export the patient | |
| 652 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 653 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 654 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 655 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 656 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 657 | |
| 658 e = DoGet(_REMOTE, '/exports') | |
| 659 self.assertEqual(4, len(e['Exports'])) | |
| 660 self.assertTrue(e['Done']) | |
| 661 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 662 seqPatient = e['Last'] | |
| 663 self.assertNotEqual(seqInstance, seqSeries) | |
| 664 self.assertNotEqual(seqSeries, seqStudy) | |
| 665 self.assertNotEqual(seqStudy, seqPatient) | |
| 666 self.assertTrue(seqInstance < seqSeries) | |
| 667 self.assertTrue(seqSeries < seqStudy) | |
| 668 self.assertTrue(seqStudy < seqPatient) | |
| 669 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 670 self.assertEqual(1, len(e['Exports'])) | |
| 671 self.assertFalse(e['Done']) | |
| 672 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 673 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 674 self.assertEqual(1, len(e['Exports'])) | |
| 675 self.assertFalse(e['Done']) | |
| 676 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 677 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 678 self.assertEqual(1, len(e['Exports'])) | |
| 679 self.assertFalse(e['Done']) | |
| 680 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 681 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 682 self.assertEqual(1, len(e['Exports'])) | |
| 683 self.assertTrue(e['Done']) | |
| 684 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 685 e = DoGet(_REMOTE, '/exports?last') | |
| 686 self.assertEqual(1, len(e['Exports'])) | |
| 687 self.assertTrue(e['Done']) | |
| 688 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 689 | |
| 690 | |
| 691 # Check the content of the logged information | |
| 692 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 693 | |
| 694 if 'PatientID' in e[0]: | |
| 695 # Since Orthanc 0.8.6 | |
| 696 patient = 'PatientID' | |
| 697 study = 'StudyInstanceUID' | |
| 698 series = 'SeriesInstanceUID' | |
| 699 instance = 'SOPInstanceUID' | |
| 700 else: | |
| 701 # Up to Orthanc 0.8.5 | |
| 702 patient = 'PatientId' | |
| 703 study = 'StudyInstanceUid' | |
| 704 series = 'SeriesInstanceUid' | |
| 705 instance = 'SopInstanceUid' | |
| 706 | |
| 707 for k in range(4): | |
| 708 self.assertTrue('Date' in e[k]) | |
| 709 self.assertTrue('Seq' in e[k]) | |
| 710 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 711 | |
| 712 self.assertEqual(10, len(e[0])) | |
| 713 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 714 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 715 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 716 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 717 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 718 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 719 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 720 | |
| 721 self.assertEqual(9, len(e[1])) | |
| 722 self.assertEqual('Series', e[1]['ResourceType']) | |
| 723 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 724 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 725 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 726 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 727 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 728 | |
| 729 self.assertEqual(8, len(e[2])) | |
| 730 self.assertEqual('Study', e[2]['ResourceType']) | |
| 731 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 732 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 733 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 734 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 735 | |
| 736 self.assertEqual(7, len(e[3])) | |
| 737 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 738 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 739 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 740 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 741 | |
| 742 DropOrthanc(_REMOTE) | |
| 743 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 744 | |
| 745 | |
| 746 def test_store_peer(self): | |
| 747 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 748 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 749 | |
| 750 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 751 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 752 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 753 | |
| 754 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 755 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 756 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 757 | |
| 758 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 759 | |
| 760 DropOrthanc(_REMOTE) | |
| 761 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 762 | |
| 763 | |
| 764 def test_bulk_storescu(self): | |
| 765 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 766 | |
| 767 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 768 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 769 | |
| 770 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 771 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 772 | |
| 773 DropOrthanc(_LOCAL) | |
| 774 | |
| 775 # Send using patient's UUID | |
| 776 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 777 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 778 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 779 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 780 | |
| 781 | |
| 782 def test_color(self): | |
| 783 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 784 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 785 self.assertEqual("RGB", im.mode) | |
| 786 self.assertEqual(41, im.size[0]) | |
| 787 self.assertEqual(41, im.size[1]) | |
| 788 | |
| 789 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 790 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 791 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 792 | |
| 793 | |
| 12 | 794 def test_faking_ruby_put(self): |
| 795 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 796 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 797 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 798 a = DoGet(_REMOTE, '/patients')[0] | |
| 799 b = DoGet(_REMOTE, '/patients')[1] | |
| 800 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 801 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 802 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 803 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 804 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 805 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 806 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 807 | |
| 808 | |
| 809 def test_faking_ruby_delete(self): | |
| 810 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 811 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 812 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 813 a = DoGet(_REMOTE, '/patients')[0] | |
| 814 b = DoGet(_REMOTE, '/patients')[1] | |
| 815 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 816 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 817 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 818 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 819 | |
| 820 | |
| 821 def test_faking_google_put(self): | |
| 822 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 823 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 824 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 825 a = DoGet(_REMOTE, '/patients')[0] | |
| 826 b = DoGet(_REMOTE, '/patients')[1] | |
| 827 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 828 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 829 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 830 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 831 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 832 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 833 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 834 | |
| 835 | |
| 836 def test_faking_google_delete(self): | |
| 837 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 838 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 839 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 840 a = DoGet(_REMOTE, '/patients')[0] | |
| 841 b = DoGet(_REMOTE, '/patients')[1] | |
| 842 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 843 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 844 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 845 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 846 | |
| 847 | |
| 848 def test_lua(self): | |
| 849 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 850 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 851 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 852 | |
| 853 | |
| 854 def test_metadata(self): | |
| 855 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 856 p = DoGet(_REMOTE, '/patients')[0] | |
| 857 i = DoGet(_REMOTE, '/instances')[0] | |
| 858 | |
| 859 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 860 self.assertEqual(1, len(m)) | |
| 861 self.assertEqual('LastUpdate', m[0]) | |
| 862 | |
| 863 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
| 864 self.assertEqual(3, len(m)) | |
| 865 self.assertTrue('IndexInSeries' in m) | |
| 866 self.assertTrue('ReceptionDate' in m) | |
| 867 self.assertTrue('RemoteAET' in m) | |
| 868 | |
| 869 # Play with custom metadata | |
| 870 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 871 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 872 self.assertEqual(2, len(m)) | |
| 873 self.assertTrue('LastUpdate' in m) | |
| 874 self.assertTrue('5555' in m) | |
| 875 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 876 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 877 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 878 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 879 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 880 self.assertEqual(1, len(m)) | |
| 881 self.assertTrue('LastUpdate' in m) | |
| 13 | 882 |
| 883 | |
| 884 def test_statistics(self): | |
| 885 # Upload 16 instances | |
| 886 for i in range(4): | |
| 887 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 888 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 889 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 890 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 891 | |
| 892 s = DoGet(_REMOTE, '/statistics') | |
| 893 self.assertEqual(16, s['CountInstances']) | |
| 894 self.assertEqual(2, s['CountPatients']) | |
| 895 self.assertEqual(2, s['CountStudies']) | |
| 896 self.assertEqual(4, s['CountSeries']) | |
| 897 d = int(s['TotalUncompressedSize']) | |
| 898 | |
| 899 e = 0 | |
| 900 for patient in DoGet(_REMOTE, '/patients'): | |
| 901 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 902 self.assertEqual(8, s['CountInstances']) | |
| 903 self.assertEqual(1, s['CountStudies']) | |
| 904 self.assertEqual(2, s['CountSeries']) | |
| 905 e += int(s['UncompressedSize']) | |
| 906 | |
| 907 for study in DoGet(_REMOTE, '/studies'): | |
| 908 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 909 self.assertEqual(8, s['CountInstances']) | |
| 910 self.assertEqual(2, s['CountSeries']) | |
| 911 e += int(s['UncompressedSize']) | |
| 912 | |
| 913 for series in DoGet(_REMOTE, '/series'): | |
| 914 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 915 self.assertEqual(4, s['CountInstances']) | |
| 916 e += int(s['UncompressedSize']) | |
| 917 | |
| 918 self.assertEqual(3 * d, e) | |
| 919 | |
| 920 | |
| 921 def test_custom_attachment(self): | |
| 922 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 923 patient = DoGet(_REMOTE, '/patients')[0] | |
| 924 instance = DoGet(_REMOTE, '/instances')[0] | |
| 925 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 926 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 927 | |
| 928 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 929 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 930 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 931 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 932 | |
| 933 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 934 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 935 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 936 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 937 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 938 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 939 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 940 | |
| 941 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 942 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 943 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 944 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 945 size + | |
| 946 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 947 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 948 | |
| 949 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 950 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 951 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 952 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 953 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 954 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 955 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 956 | |
| 957 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 958 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 959 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 960 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 961 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 962 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 963 | |
| 964 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 965 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 966 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 967 | |
| 968 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 969 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 970 | |
| 971 | |
| 972 def test_incoming_storescu(self): | |
| 973 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 974 subprocess.check_call([ 'storescu', _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
| 975 GetDatabasePath('ColorTestImageJ.dcm') ]) | |
| 976 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 977 | |
| 978 | |
| 979 def test_incoming_findscu(self): | |
| 980 def CallFindScu(args): | |
| 981 p = subprocess.Popen([ 'findscu', '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], | |
| 982 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, | |
| 983 stderr=subprocess.PIPE) | |
| 984 return p.communicate()[1] | |
| 985 | |
| 986 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 987 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 988 | |
| 989 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 990 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 991 self.assertEqual(2, len(patientNames)) | |
| 992 self.assertTrue('Test Patient BG ' in patientNames) | |
| 993 self.assertTrue('Anonymized' in patientNames) | |
| 994 | |
| 995 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 996 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 997 self.assertEqual(2, len(series)) | |
| 998 self.assertTrue('20070208' in series) | |
| 999 self.assertTrue('19980312' in series) | |
| 1000 | |
| 1001 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) | |
| 1002 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1003 self.assertEqual(1, len(series)) | |
| 1004 | |
| 1005 # Test the "CaseSentitivePN" flag (false by default) | |
| 1006 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1007 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1008 self.assertEqual(1, len(series)) | |
| 1009 | |
| 1010 | |
| 1011 def test_incoming_movescu(self): | |
| 1012 def CallMoveScu(args): | |
| 1013 subprocess.check_call([ 'movescu', | |
| 17 | 1014 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) |
| 1015 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 1016 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 13 | 1017 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
| 1018 stderr=subprocess.PIPE) | |
| 1019 | |
| 1020 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1021 | |
| 1022 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 17 | 1023 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1024 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
| 1025 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
| 1026 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1027 | |
| 1028 | |
| 1029 def test_findscu(self): | |
| 1030 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1031 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1032 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1033 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1034 | |
| 1035 # Test the "find-patient" level | |
| 1036 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1037 self.assertEqual(1, len(p)) | |
| 1038 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1039 | |
| 1040 # Test wildcards constraints. The "LO" value representation | |
| 1041 # for PatientID is always case-sensitive, but the "PN" for | |
| 1042 # PatientName might depend on the implementation: | |
| 1043 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1044 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1045 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1046 self.assertEqual(1, len(p)) | |
| 1047 | |
| 1048 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1049 self.assertEqual(1, len(p)) | |
| 1050 | |
| 1051 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1052 self.assertEqual(1, len(p)) | |
| 1053 | |
| 1054 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1055 self.assertEqual(1, len(p)) | |
| 1056 | |
| 1057 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1058 self.assertEqual(0, len(p)) | |
| 1059 | |
| 1060 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1061 self.assertEqual(0, len(p)) | |
| 1062 | |
| 1063 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1064 self.assertEqual(0, len(p)) | |
| 1065 | |
| 1066 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1067 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1068 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1069 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1070 | |
| 1071 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1072 self.assertEqual(2, len(p)) | |
| 1073 | |
| 1074 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1075 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1076 self.assertEqual(1, len(s)) | |
| 1077 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1078 | |
| 1079 # Test range searches | |
| 1080 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1081 'StudyDate' : '-20070101' }) | |
| 1082 self.assertEqual(0, len(t)) | |
| 1083 | |
| 1084 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1085 'StudyDate' : '20090101-' }) | |
| 1086 self.assertEqual(0, len(t)) | |
| 1087 | |
| 1088 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1089 'StudyDate' : '20070101-' }) | |
| 1090 self.assertEqual(1, len(t)) | |
| 1091 | |
| 1092 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1093 'StudyDate' : '-20090101' }) | |
| 1094 self.assertEqual(1, len(t)) | |
| 1095 | |
| 1096 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1097 'StudyDate' : '20070207-20070207' }) | |
| 1098 self.assertEqual(0, len(t)) | |
| 1099 | |
| 1100 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1101 'StudyDate' : '20070208-20070208' }) | |
| 1102 self.assertEqual(1, len(t)) | |
| 1103 | |
| 1104 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1105 'StudyDate' : '20070209-20070209' }) | |
| 1106 self.assertEqual(0, len(t)) | |
| 1107 | |
| 1108 # Test the ModalitiesInStudy tag | |
| 1109 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1110 'PatientID' : 'B9uTHKOZ', | |
| 1111 'ModalitiesInStudy' : 'US' }) | |
| 1112 self.assertEqual(0, len(t)) | |
| 1113 | |
| 1114 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1115 'PatientID' : 'B9uTHKOZ', | |
| 1116 'ModalitiesInStudy' : 'CT' }) | |
| 1117 self.assertEqual(1, len(t)) | |
| 1118 | |
| 1119 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1120 'PatientID' : 'B9uTHKOZ', | |
| 1121 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1122 self.assertEqual(1, len(t)) | |
| 1123 | |
| 1124 # Test the "find-series" level | |
| 1125 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1126 'PatientID' : 'B9uTHKOZ', | |
| 1127 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1128 self.assertEqual(1, len(t)) | |
| 1129 | |
| 1130 # Test "\" separator | |
| 1131 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1132 'PatientID' : 'B9uTHKOZ', | |
| 1133 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1134 'Modality' : 'MR\\CT\\US' }) | |
| 1135 self.assertEqual(1, len(t)) | |
| 1136 | |
| 1137 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1138 'PatientID' : 'B9uTHKOZ', | |
| 1139 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1140 'Modality' : 'MR\\US' }) | |
| 1141 self.assertEqual(0, len(t)) | |
| 1142 | |
| 1143 | |
| 1144 def test_update_modalities(self): | |
| 1145 try: | |
| 1146 DoDelete(_REMOTE, '/modalities/toto') | |
| 1147 except: | |
| 1148 pass | |
| 1149 try: | |
| 1150 DoDelete(_REMOTE, '/modalities/tata') | |
| 1151 except: | |
| 1152 pass | |
| 1153 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1154 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 1155 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) | |
| 1156 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) | |
| 1157 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) | |
| 1158 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1159 DoDelete(_REMOTE, '/modalities/toto') | |
| 1160 DoDelete(_REMOTE, '/modalities/tata') | |
| 1161 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1162 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1163 | |
| 1164 | |
| 1165 def test_update_peers(self): | |
| 1166 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1167 try: | |
| 1168 DoDelete(_REMOTE, '/peers/toto') | |
| 1169 except: | |
| 1170 pass | |
| 1171 try: | |
| 1172 DoDelete(_REMOTE, '/peers/tata') | |
| 1173 except: | |
| 1174 pass | |
| 1175 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1176 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 1177 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
| 1178 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
| 1179 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1180 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1181 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1182 DoDelete(_REMOTE, '/peers/toto') | |
| 1183 DoDelete(_REMOTE, '/peers/tata') | |
| 1184 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1185 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1186 | |
| 1187 | |
| 1188 def test_mesterhazy_modification(self): | |
| 1189 # When I modify a series ( eg. curl | |
| 1190 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1191 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1192 # series is added to a new Study, instead of the existing | |
| 1193 # Study. Fixed in Orthanc 0.7.5 | |
| 1194 | |
| 1195 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1196 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1197 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1198 | |
| 1199 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1200 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1201 | |
| 1202 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1203 | |
| 1204 | |
| 1205 def test_create(self): | |
| 1206 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1207 json.dumps({ | |
| 1208 'PatientName' : 'Jodogne', | |
| 1209 'Modality' : 'CT', | |
| 1210 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA | |
| 1211 })) | |
| 1212 | |
| 1213 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1214 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1215 | |
| 1216 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1217 self.assertEqual((5, 5), png.size) | |
| 1218 | |
| 1219 | |
| 1220 def test_pilates(self): | |
| 1221 # "SCU failed error when accessing orthanc with osirix" by | |
| 1222 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1223 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1224 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1225 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1226 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1227 | |
| 1228 | |
| 1229 def test_shared_tags(self): | |
| 1230 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1231 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1232 p = DoGet(_REMOTE, '/patients')[0] | |
| 1233 | |
| 1234 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1235 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1236 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1237 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1238 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1239 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1240 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1241 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1242 | |
| 1243 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1244 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1245 | |
| 1246 | |
| 1247 def test_modules(self): | |
| 1248 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1249 p = DoGet(_REMOTE, '/patients')[0] | |
| 1250 s = DoGet(_REMOTE, '/studies')[0] | |
| 1251 t = DoGet(_REMOTE, '/series')[0] | |
| 1252 | |
| 1253 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1254 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1255 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1256 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1257 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1258 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1259 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1260 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1261 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1262 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1263 | |
| 1264 | |
| 1265 def test_auto_directory(self): | |
| 1266 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1267 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1268 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
| 1269 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) | |
| 1270 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1271 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1272 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1273 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1274 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1275 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1276 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1277 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1278 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1279 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 1280 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) | |
| 1281 | |
| 1282 | |
| 1283 def test_echo(self): | |
| 1284 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1285 | |
| 1286 | |
| 1287 def test_xml(self): | |
| 1288 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1289 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1290 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1291 self.assertEqual(len(items), len(json)) | |
| 1292 | |
| 1293 self.assertTrue('dicom-conformance' in json) | |
| 1294 | |
| 1295 ok = False | |
| 1296 for i in items: | |
| 1297 if i.childNodes[0].data == 'dicom-conformance': | |
| 1298 ok = True | |
| 1299 self.assertTrue(ok) | |
| 1300 | |
| 1301 | |
| 1302 def test_issue_16(self): | |
| 1303 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] | |
| 1304 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1305 self.assertEqual('0018,1063', t) | |
| 1306 | |
| 1307 | |
| 1308 def test_issue_22(self): | |
| 1309 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1310 a = [ | |
| 1311 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1312 "c69eee9a51eea3e8611e82e578897254", | |
| 1313 "315666be83e2d0111c77bc0996d84901", | |
| 1314 "3e27aa959d911172c48a1436443c72b1", | |
| 1315 "958642c9e7e9d232d3869faff546058c", | |
| 1316 "5e7ea8e3e4230cae707d143481355c59", | |
| 1317 "eda37f83558d858a596175aed8b2ad47", | |
| 1318 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1319 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1320 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1321 "e2f39e85896fe58876654b94cd0b5013", | |
| 1322 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1323 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1324 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1325 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1326 "806b8b3e300c615099c11a5ec23465aa", | |
| 1327 "7c836aa298ba6eef96434579af631a11", | |
| 1328 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1329 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1330 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1331 "44e6670f127e612a2b4aa60a0d207698", | |
| 1332 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1333 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1334 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1335 ] | |
| 1336 | |
| 1337 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1338 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1339 | |
| 1340 for i in range(len(a)): | |
| 1341 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1342 | |
| 1343 | |
| 1344 def test_issue_19(self): | |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1345 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1346 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1347 | |
| 1348 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1349 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1350 |
| 1351 | |
| 1352 def test_issue_37(self): | |
| 1353 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 | |
| 1354 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1355 | |
| 1356 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1357 'CaseSensitive' : True, | |
| 1358 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1359 self.assertEqual(1, len(a)) | |
| 14 | 1360 |
| 1361 | |
| 1362 def test_rest_find(self): | |
| 1363 # Upload 8 instances | |
| 1364 for i in range(2): | |
| 1365 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1366 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1367 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1368 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1369 | |
| 1370 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1371 'CaseSensitive' : False, | |
| 1372 'Query' : { 'PatientName' : '*n*' }}) | |
| 1373 self.assertEqual(2, len(a)) | |
| 1374 | |
| 1375 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1376 'CaseSensitive' : True, | |
| 1377 'Query' : { 'PatientName' : '*n*' }}) | |
| 1378 self.assertEqual(0, len(a)) | |
| 1379 | |
| 1380 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1381 'Level' : 'Patient', | |
| 1382 'CaseSensitive' : False, | |
| 1383 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1384 self.assertEqual(1, len(a)) | |
| 1385 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1386 | |
| 1387 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1388 'CaseSensitive' : True, | |
| 1389 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1390 self.assertEqual(0, len(a)) | |
| 1391 | |
| 1392 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1393 'CaseSensitive' : True, | |
| 1394 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1395 self.assertEqual(1, len(a)) | |
| 1396 | |
| 1397 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1398 'CaseSensitive' : True, | |
| 1399 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1400 self.assertEqual(2, len(a)) | |
| 1401 | |
| 1402 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1403 'CaseSensitive' : True, | |
| 1404 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1405 self.assertEqual(4, len(a)) | |
| 1406 | |
| 1407 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1408 self.assertEqual(2, len(a)) | |
| 1409 | |
| 1410 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1411 self.assertEqual(2, len(a)) | |
| 1412 | |
| 1413 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1414 self.assertEqual(4, len(a)) | |
| 1415 | |
| 1416 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1417 self.assertEqual(8, len(a)) | |
| 1418 | |
| 1419 | |
| 1420 def test_rest_query_retrieve(self): | |
| 1421 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1422 | |
| 1423 # Upload 8 instances | |
| 1424 for i in range(2): | |
| 1425 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1426 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1427 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1428 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1429 | |
| 1430 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1431 for p in DoGet(_REMOTE, '/patients'): | |
| 1432 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1433 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1434 | |
| 1435 for q in DoGet(_REMOTE, '/queries'): | |
| 1436 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1437 | |
| 1438 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1439 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1440 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 1441 'Query' : { 'PatientName' : '*NE*' }})['ID'] | |
| 1442 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) | |
| 1443 | |
| 1444 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1445 self.assertTrue('answers' in b) | |
| 1446 self.assertTrue('level' in b) | |
| 1447 self.assertTrue('modality' in b) | |
| 1448 self.assertTrue('query' in b) | |
| 1449 self.assertTrue('retrieve' in b) | |
| 1450 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1451 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1452 | |
| 1453 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 1454 self.assertEqual(1, len(q)) | |
| 1455 self.assertTrue('PatientName' in q) | |
| 1456 self.assertEqual('*NE*', q['PatientName']) | |
| 1457 | |
| 1458 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1459 | |
| 1460 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1461 self.assertTrue('content' in s) | |
| 1462 self.assertTrue('retrieve' in s) | |
| 1463 | |
| 1464 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1465 self.assertEqual('887', s['PatientID']) | |
| 1466 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1467 | |
| 1468 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1469 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1470 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1471 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1472 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1473 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1474 | |
| 1475 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC') | |
| 1476 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1477 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1478 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1479 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1480 | |
| 1481 DoDelete(_REMOTE, '/queries/%s' % a) | |
| 1482 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1483 | |
| 1484 | |
| 1485 def test_parent(self): | |
| 1486 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1487 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1488 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1489 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1490 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 1491 self.assertEqual(instance, u); | |
| 1492 | |
| 1493 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1494 self.assertEqual('Patient', a['Type']) | |
| 1495 self.assertEqual(patient, a['ID']) | |
| 1496 | |
| 1497 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1498 self.assertEqual('Patient', a['Type']) | |
| 1499 self.assertEqual(patient, a['ID']) | |
| 1500 | |
| 1501 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1502 self.assertEqual('Study', a['Type']) | |
| 1503 self.assertEqual(study, a['ID']) | |
| 1504 | |
| 1505 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1506 self.assertEqual('Patient', a['Type']) | |
| 1507 self.assertEqual(patient, a['ID']) | |
| 1508 | |
| 1509 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1510 self.assertEqual('Study', a['Type']) | |
| 1511 self.assertEqual(study, a['ID']) | |
| 1512 | |
| 1513 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1514 self.assertEqual('Series', a['Type']) | |
| 1515 self.assertEqual(series, a['ID']) | |
| 1516 | |
| 1517 | |
| 1518 def test_shanon(self): | |
| 1519 def Anonymize(instance, replacements = {}): | |
| 1520 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json') | |
| 1521 | |
| 1522 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1523 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1524 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1525 | |
| 1526 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1527 ids = [ 'ozp00SjY2xG', | |
| 1528 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1529 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1530 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1531 | |
| 1532 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1533 for i in range(4): | |
| 1534 self.assertNotEqual(ids[i], a[i]) | |
| 1535 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1536 | |
| 1537 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1538 for i in range(4): | |
| 1539 self.assertNotEqual(ids[i], a[i]) | |
| 1540 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1541 | |
| 1542 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1543 self.assertEqual('instance', a[3]) | |
| 1544 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1545 | |
| 1546 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1547 self.assertEqual('series', a[2]) | |
| 1548 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1549 | |
| 1550 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1551 self.assertEqual('study', a[1]) | |
| 1552 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1553 | |
| 1554 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1555 self.assertEqual('patient', a[0]) | |
| 1556 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1557 | |
| 1558 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1559 'StudyInstanceUID' : 'study', | |
| 1560 'SeriesInstanceUID' : 'series', | |
| 1561 'SOPInstanceUID' : 'instance' }), tags) | |
| 1562 self.assertEqual('patient', a[0]) | |
| 1563 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1564 | |
| 1565 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1566 | |
| 1567 | |
| 1568 def test_shanon_2(self): | |
| 1569 def Modify(instance, replacements = {}): | |
| 1570 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json') | |
| 1571 | |
| 1572 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1573 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1574 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1575 | |
| 1576 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1577 ids = [ 'ozp00SjY2xG', | |
| 1578 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1579 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1580 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1581 | |
| 1582 a = ExtractDicomTags(Modify(u), tags) | |
| 1583 self.assertEqual(ids[0], a[0]) | |
| 1584 self.assertEqual(ids[1], a[1]) | |
| 1585 self.assertEqual(ids[2], a[2]) | |
| 1586 self.assertNotEqual(ids[3], a[3]) | |
| 1587 self.assertEqual(0, len(a[4])) | |
| 1588 | |
| 1589 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1590 self.assertEqual(ids[0], a[0]) | |
| 1591 self.assertEqual(ids[1], a[1]) | |
| 1592 self.assertEqual(ids[2], a[2]) | |
| 1593 self.assertEqual('instance', a[3]) | |
| 1594 | |
| 1595 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1596 self.assertEqual(ids[0], a[0]) | |
| 1597 self.assertEqual(ids[1], a[1]) | |
| 1598 self.assertEqual('series', a[2]) | |
| 1599 self.assertNotEqual(ids[3], a[3]) | |
| 1600 | |
| 1601 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1602 self.assertEqual(ids[0], a[0]) | |
| 1603 self.assertEqual('study', a[1]) | |
| 1604 self.assertNotEqual(ids[2], a[2]) | |
| 1605 self.assertNotEqual(ids[3], a[3]) | |
| 1606 | |
| 1607 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1608 self.assertEqual('patient', a[0]) | |
| 1609 self.assertNotEqual(ids[1], a[1]) | |
| 1610 self.assertNotEqual(ids[2], a[2]) | |
| 1611 self.assertNotEqual(ids[3], a[3]) | |
| 1612 | |
| 1613 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1614 'StudyInstanceUID' : 'study', | |
| 1615 'SeriesInstanceUID' : 'series', | |
| 1616 'SOPInstanceUID' : 'instance' }), tags) | |
| 1617 self.assertEqual('patient', a[0]) | |
| 1618 self.assertEqual('study', a[1]) | |
| 1619 self.assertEqual('series', a[2]) | |
| 1620 self.assertEqual('instance', a[3]) | |
| 1621 | |
| 1622 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1623 | |
| 1624 | |
| 1625 def test_instances_tags(self): | |
| 1626 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1627 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1628 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1629 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1630 | |
| 1631 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1632 self.assertEqual(2, len(i)) | |
| 1633 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1634 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1635 | |
| 1636 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 1637 self.assertEqual(2, len(i)) | |
| 1638 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1639 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1640 | |
| 1641 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1642 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 1643 self.assertEqual(1, len(i)) | |
| 1644 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1645 | |
| 1646 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 1647 self.assertEqual(1, len(i)) | |
| 1648 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1649 | |
| 1650 | |
| 1651 def test_lookup(self): | |
| 1652 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1653 self.assertEqual(0, len(a)) | |
| 1654 | |
| 1655 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1656 | |
| 1657 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1658 self.assertEqual(1, len(a)) | |
| 1659 self.assertEqual('Patient', a[0]['Type']) | |
| 1660 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 1661 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 1662 | |
| 1663 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 1664 self.assertEqual(1, len(a)) | |
| 1665 self.assertEqual('Study', a[0]['Type']) | |
| 1666 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 1667 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 1668 | |
| 1669 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 1670 self.assertEqual(1, len(a)) | |
| 1671 self.assertEqual('Series', a[0]['Type']) | |
| 1672 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 1673 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 1674 | |
| 1675 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 1676 self.assertEqual(1, len(a)) | |
| 1677 self.assertEqual('Instance', a[0]['Type']) | |
| 1678 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 1679 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 1680 | |
| 1681 DropOrthanc(_REMOTE) | |
| 1682 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 1683 self.assertEqual(0, len(a)) | |
| 1684 | |
| 15 | 1685 |
| 1686 def test_autorouting(self): | |
| 1687 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 1688 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 1689 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 1690 | |
| 1691 # Check that this version is >= 0.8.0 | |
| 1692 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 1693 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1694 | |
| 1695 UploadInstance(_REMOTE, knee1) | |
| 1696 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1697 | |
| 1698 DropOrthanc(_REMOTE) | |
| 1699 DropOrthanc(_LOCAL) | |
| 1700 InstallLuaScript('Lua/Autorouting.lua') | |
| 1701 UploadInstance(_REMOTE, knee1) | |
| 1702 UploadInstance(_REMOTE, knee2) | |
| 1703 UploadInstance(_REMOTE, other) | |
| 1704 WaitEmpty(_REMOTE) | |
| 1705 UninstallLuaCallbacks() | |
| 1706 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
| 1707 | |
| 1708 DropOrthanc(_REMOTE) | |
| 1709 DropOrthanc(_LOCAL) | |
| 1710 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
| 1711 UploadInstance(_REMOTE, knee1) | |
| 1712 UploadInstance(_REMOTE, knee2) | |
| 1713 UploadInstance(_REMOTE, other) | |
| 1714 WaitEmpty(_REMOTE) | |
| 1715 UninstallLuaCallbacks() | |
| 1716 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 1717 | |
| 1718 DropOrthanc(_REMOTE) | |
| 1719 DropOrthanc(_LOCAL) | |
| 1720 InstallLuaScript('Lua/AutoroutingModification.lua') | |
| 1721 UploadInstance(_REMOTE, knee1) | |
| 1722 WaitEmpty(_REMOTE) | |
| 1723 UninstallLuaCallbacks() | |
| 1724 i = DoGet(_LOCAL, '/instances') | |
| 1725 self.assertEqual(1, len(i)) | |
| 1726 | |
| 1727 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 1728 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 1729 f.flush() | |
| 1730 routed = subprocess.check_output([ 'dcm2xml', f.name ]) | |
| 1731 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) | |
| 1732 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 1733 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 1734 |
| 1735 | |
| 1736 def test_storescu_rf(self): | |
| 1737 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 1738 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1739 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1740 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 1741 |
| 1742 | |
| 1743 def test_anonymize_instance(self): | |
| 1744 def AnonymizeAndUpload(instanceId, parameters): | |
| 1745 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 1746 'application/json'), 'application/dicom')['ID'] | |
| 1747 | |
| 1748 def ModifyAndUpload(instanceId, parameters): | |
| 1749 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 1750 'application/json'), 'application/dicom')['ID'] | |
| 1751 | |
| 1752 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 1753 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 1754 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 1755 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 1756 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 1757 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1758 | |
| 1759 b = AnonymizeAndUpload(a, '{}') | |
| 1760 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1761 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1762 | |
| 1763 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 1764 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 1765 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1766 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1767 | |
| 1768 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 1769 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1770 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1771 | |
| 1772 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 1773 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 1774 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 1775 | |
| 1776 # Examples from the Wiki | |
| 1777 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null}') | |
| 1778 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1779 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1780 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1781 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1782 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1783 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1784 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 1785 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1786 | |
| 1787 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": null}') | |
| 1788 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1789 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1790 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1791 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 1792 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 1793 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1794 | |
| 1795 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"}}') | |
| 1796 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
| 1797 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 1798 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 1799 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 1800 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 1801 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 1802 | |
| 1803 | |
| 1804 # Test modify non-existing | |
| 1805 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1806 json.dumps({ | |
| 1807 'PatientName' : 'Jodogne', | |
| 1808 'Modality' : 'CT', | |
| 1809 }))['ID'] | |
| 1810 | |
| 1811 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 1812 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 1813 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 1814 | |
| 1815 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 1816 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 1817 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 1818 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 1819 | |
|
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1820 |
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1821 def test_incoming_jpeg(self): |
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1822 def storescu(): |
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1823 with open(os.devnull, 'w') as FNULL: |
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1824 subprocess.check_call([ 'storescu', '-xs', |
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1825 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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1826 GetDatabasePath('Knix/Loc/IM-0001-0001.dcm') ], |
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1827 stderr = FNULL) |
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1828 |
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1829 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1830 InstallLuaScript('Lua/TransferSyntaxDisable.lua') |
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|
1831 self.assertRaises(Exception, storescu) |
|
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diff
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|
1832 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
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18
diff
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|
1833 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
|
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diff
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|
1834 storescu() |
|
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diff
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|
1835 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
|
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diff
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|
1836 |
|
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diff
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|
1837 |
|
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diff
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|
1838 def test_storescu_jpeg(self): |
|
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diff
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1839 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
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1840 |
|
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diff
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|
1841 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
|
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diff
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1842 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') |
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|
1843 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
|
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|
1844 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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|
1845 |
|
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|
1846 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
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diff
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|
1847 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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1848 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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diff
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|
1849 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
|
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diff
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1850 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
|
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|
1851 |
|
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|
1852 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
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|
1853 |
|
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diff
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|
1854 DropOrthanc(_REMOTE) |
|
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diff
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|
1855 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
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|
1856 |
|
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|
1857 |
|
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|
1858 def test_pixel_data(self): |
|
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diff
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|
1859 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
|
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|
1860 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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diff
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|
1861 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
|
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diff
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|
1862 |
|
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|
1863 phenixSize = 358 * 512 * 2 |
|
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diff
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|
1864 colorSize = 1000 * 1000 * 3 |
|
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diff
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|
1865 jpegSize = 51918 |
|
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|
1866 |
|
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diff
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|
1867 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
|
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diff
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|
1868 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
|
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diff
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|
1869 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
|
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diff
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|
1870 |
|
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|
1871 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
|
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|
1872 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
|
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diff
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|
1873 |
|
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|
1874 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
|
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diff
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1875 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
|
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diff
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|
1876 |
|
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diff
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|
1877 |
|
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diff
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|
1878 def test_decode_brainix(self): |
|
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|
1879 brainix = [ |
|
2a29bcff60a7
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diff
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|
1880 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
|
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diff
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|
1881 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
|
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1882 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
|
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|
1883 ] |
|
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|
1884 h = '6fb11b932d535c2be04beabd99793ff8' |
|
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1885 maxValue = 426.0 |
|
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diff
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|
1886 |
|
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1887 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
|
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|
1888 for i in brainix: |
|
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diff
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|
1889 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
|
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1890 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
|
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1891 |
|
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1892 truth2 = map(lambda x: min(255, x), truth.getdata()) |
|
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|
1893 for i in brainix: |
|
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diff
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1894 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
|
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diff
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|
1895 |
|
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diff
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|
1896 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
|
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|
1897 for i in brainix: |
|
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1898 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
|
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diff
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|
1899 |
|
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|
1900 for i in brainix: |
|
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diff
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|
1901 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
|
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|
1902 |
|
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|
1903 |
|
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|
1904 def test_decode_color(self): |
|
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1905 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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1906 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
|
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1907 |
|
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|
1908 for i in [ imagej, color ]: |
|
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|
1909 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
|
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|
1910 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
|
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|
1911 |
|
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|
1912 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
|
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1913 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
|
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1914 |
|
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1915 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
|
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|
1916 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
|
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1917 |
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|
1918 |
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|
1919 def test_decode_rf(self): |
|
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1920 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
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diff
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1921 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
|
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1922 |
|
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|
1923 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
|
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1924 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
|
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1925 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
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diff
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|
1926 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
|
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|
1927 |
|
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diff
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|
1928 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
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|
1929 |
|
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diff
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|
1930 |
|
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|
1931 def test_decode_multiframe(self): |
|
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1932 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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1933 |
|
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1934 # Test the first frame |
|
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1935 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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1936 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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1937 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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1938 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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1939 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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1940 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
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1941 |
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1942 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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1943 |
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1944 # Test the last frame |
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1945 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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1946 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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1947 |
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1948 |
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1949 def test_decode_signed(self): |
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1950 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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1951 minValue = -2000 |
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1952 maxValue = 4042 |
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1953 |
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1954 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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1955 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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1956 |
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1957 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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1958 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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1959 |
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1960 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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1961 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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1962 |
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1963 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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1964 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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1965 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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1966 |
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1967 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |