annotate Tests/Toolbox.py @ 161:27b3b0df5f90

2 upload tests
author am@osimis.io
date Fri, 17 Aug 2018 17:24:11 +0200
parents 0682740fcfcb
children ed3db6386587
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1 #!/usr/bin/python
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2
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3 # Orthanc - A Lightweight, RESTful DICOM Store
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4 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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5 # Department, University Hospital of Liege, Belgium
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6 # Copyright (C) 2017-2018 Osimis S.A., Belgium
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7 #
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8 # This program is free software: you can redistribute it and/or
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9 # modify it under the terms of the GNU General Public License as
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10 # published by the Free Software Foundation, either version 3 of the
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11 # License, or (at your option) any later version.
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12 #
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13 # This program is distributed in the hope that it will be useful, but
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14 # WITHOUT ANY WARRANTY; without even the implied warranty of
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15 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 # General Public License for more details.
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17 #
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18 # You should have received a copy of the GNU General Public License
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19 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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21
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22 import hashlib
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23 import httplib2
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24 import json
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25 import os
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26 import re
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27 import signal
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28 import subprocess
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29 import threading
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30 import sys
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31 import time
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32 import zipfile
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33
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34 from PIL import Image
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36 if (sys.version_info >= (3, 0)):
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37 from urllib.parse import urlencode
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38 from io import StringIO
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39 from io import BytesIO
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40
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41 else:
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42 from urllib import urlencode
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43
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44 # http://stackoverflow.com/a/1313868/881731
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45 try:
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46 from cStringIO import StringIO
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47 except:
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48 from StringIO import StringIO
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51 def _DecodeJson(s):
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52 t = s
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54 if (sys.version_info >= (3, 0)):
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55 try:
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56 t = s.decode()
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57 except:
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58 pass
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60 try:
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61 return json.loads(t)
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62 except:
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63 return t
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65
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66 def DefineOrthanc(server = 'localhost',
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67 restPort = 8042,
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68 username = None,
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69 password = None,
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70 aet = 'ORTHANC',
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71 dicomPort = 4242):
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72 #m = re.match(r'(http|https)://([^:]+):([^@]+)@([^@]+)', url)
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73 #if m != None:
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74 # url = m.groups()[0] + '://' + m.groups()[3]
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75 # username = m.groups()[1]
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76 # password = m.groups()[2]
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78 #if not url.endswith('/'):
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79 # url += '/'
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81 return {
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82 'Server' : server,
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83 'Url' : 'http://%s:%d/' % (server, restPort),
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84 'Username' : username,
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85 'Password' : password,
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86 'DicomAet' : aet,
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87 'DicomPort' : dicomPort
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88 }
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91 def _SetupCredentials(orthanc, http):
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92 if (orthanc['Username'] != None and
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93 orthanc['Password'] != None):
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94 http.add_credentials(orthanc['Username'], orthanc['Password'])
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96 def DoGetRaw(orthanc, uri, data = {}, body = None, headers = {}):
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97 d = ''
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98 if len(data.keys()) > 0:
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99 d = '?' + urlencode(data)
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100
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101 http = httplib2.Http()
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102 http.follow_redirects = False
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103 _SetupCredentials(orthanc, http)
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104
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105 resp, content = http.request(orthanc['Url'] + uri + d, 'GET', body = body,
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106 headers = headers)
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107 return (resp, content)
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108
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109
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110 def DoGet(orthanc, uri, data = {}, body = None, headers = {}):
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111 (resp, content) = DoGetRaw(orthanc, uri, data = data, body = body, headers = headers)
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112
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113 if not (resp.status in [ 200 ]):
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114 raise Exception(resp.status)
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115 else:
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116 return _DecodeJson(content)
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117
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118 def _DoPutOrPost(orthanc, uri, method, data, contentType, headers):
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119 http = httplib2.Http()
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120 http.follow_redirects = False
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121 _SetupCredentials(orthanc, http)
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122
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123 if isinstance(data, (str, bytearray, bytes)):
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124 body = data
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125 if len(contentType) != 0:
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126 headers['content-type'] = contentType
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127 else:
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128 body = json.dumps(data)
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129 headers['content-type'] = 'application/json'
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130
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131 headers['expect'] = ''
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132
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133 resp, content = http.request(orthanc['Url'] + uri, method,
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134 body = body,
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135 headers = headers)
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136 if not (resp.status in [ 200, 302 ]):
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137 raise Exception(resp.status)
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138 else:
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139 return _DecodeJson(content)
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140
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141 def DoDelete(orthanc, uri):
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142 http = httplib2.Http()
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143 http.follow_redirects = False
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144 _SetupCredentials(orthanc, http)
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145
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146 resp, content = http.request(orthanc['Url'] + uri, 'DELETE')
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147 if not (resp.status in [ 200 ]):
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148 raise Exception(resp.status)
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149 else:
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150 return _DecodeJson(content)
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151
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152 def DoPut(orthanc, uri, data = {}, contentType = ''):
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153 return _DoPutOrPost(orthanc, uri, 'PUT', data, contentType, {})
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154
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155 def DoPost(orthanc, uri, data = {}, contentType = '', headers = {}):
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156 return _DoPutOrPost(orthanc, uri, 'POST', data, contentType, headers)
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157
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158 def GetDatabasePath(filename):
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159 return os.path.join(os.path.dirname(__file__), '..', 'Database', filename)
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160
0
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161 def UploadInstance(orthanc, filename):
83
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162 with open(GetDatabasePath(filename), 'rb') as f:
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163 d = f.read()
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164
0
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165 return DoPost(orthanc, '/instances', d, 'application/dicom')
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166
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167 def UploadFolder(orthanc, path):
13
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168 for i in os.listdir(GetDatabasePath(path)):
1
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169 try:
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170 UploadInstance(orthanc, os.path.join(path, i))
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171 except:
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172 pass
0
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173
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174 def DropOrthanc(orthanc):
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175 # Reset the Lua callbacks
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176 DoPost(orthanc, '/tools/execute-script', 'function OnStoredInstance(instanceId, tags, metadata) end', 'application/lua')
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177
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178 DoDelete(orthanc, '/exports')
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179
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180 for s in DoGet(orthanc, '/patients'):
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181 DoDelete(orthanc, '/patients/%s' % s)
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182
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183 def ComputeMD5(data):
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184 m = hashlib.md5()
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185 m.update(data)
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186 return m.hexdigest()
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187
59
84378ada15ab test_decode_brainix_as_jpeg
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188 def GetImage(orthanc, uri, headers = {}):
0
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189 # http://www.pythonware.com/library/pil/handbook/introduction.htm
59
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190 data = DoGet(orthanc, uri, headers = headers)
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diff changeset
191 if (sys.version_info >= (3, 0)):
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192 return Image.open(BytesIO(data))
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193 else:
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194 return Image.open(StringIO(data))
0
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195
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196 def GetArchive(orthanc, uri):
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197 # http://stackoverflow.com/a/1313868/881731
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198 s = DoGet(orthanc, uri)
83
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199
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200 if (sys.version_info >= (3, 0)):
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201 return zipfile.ZipFile(BytesIO(s), "r")
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202 else:
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203 return zipfile.ZipFile(StringIO(s), "r")
0
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204
1
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diff changeset
205 def IsDefinedInLua(orthanc, name):
0
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206 s = DoPost(orthanc, '/tools/execute-script', 'print(type(%s))' % name, 'application/lua')
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207 return (s.strip() != 'nil')
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208
1
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diff changeset
209 def WaitEmpty(orthanc):
0
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210 while True:
1
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diff changeset
211 if len(DoGet(orthanc, '/instances')) == 0:
0
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212 return
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213 time.sleep(0.1)
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214
137
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215 def WaitJobDone(orthanc, job):
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216 while True:
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217 s = DoGet(orthanc, '/jobs/%s' % job) ['State']
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diff changeset
218
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diff changeset
219 if s == 'Success':
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220 return True
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diff changeset
221 elif s == 'Failure':
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diff changeset
222 return False
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diff changeset
223
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diff changeset
224 time.sleep(0.1)
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diff changeset
225
138
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diff changeset
226 def MonitorJob(orthanc, func): # "func" is a lambda
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diff changeset
227 a = set(DoGet(orthanc, '/jobs'))
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diff changeset
228 func()
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diff changeset
229 b = set(DoGet(orthanc, '/jobs'))
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diff changeset
230
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diff changeset
231 diff = list(b - a)
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diff changeset
232 if len(diff) != 1:
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diff changeset
233 print('No job was created!')
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diff changeset
234 return False
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diff changeset
235 else:
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diff changeset
236 return WaitJobDone(orthanc, diff[0])
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diff changeset
237
1
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parents: 0
diff changeset
238 def GetDockerHostAddress():
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diff changeset
239 route = subprocess.check_output([ '/sbin/ip', 'route' ])
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240 m = re.search(r'default via ([0-9.]+)', route)
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diff changeset
241 if m == None:
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diff changeset
242 return 'localhost'
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diff changeset
243 else:
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diff changeset
244 return m.groups()[0]
4
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diff changeset
245
44
ffa542cce638 Toolbox.FindExecutable()
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diff changeset
246 def FindExecutable(name):
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diff changeset
247 p = os.path.join('/usr/local/bin', name)
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diff changeset
248 if os.path.isfile(p):
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diff changeset
249 return p
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diff changeset
250
ffa542cce638 Toolbox.FindExecutable()
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diff changeset
251 p = os.path.join('/usr/local/sbin', name)
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diff changeset
252 if os.path.isfile(p):
ffa542cce638 Toolbox.FindExecutable()
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diff changeset
253 return p
ffa542cce638 Toolbox.FindExecutable()
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diff changeset
254
ffa542cce638 Toolbox.FindExecutable()
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diff changeset
255 return name
4
292a46fe374c reorganization
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parents: 3
diff changeset
256
292a46fe374c reorganization
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parents: 3
diff changeset
257
292a46fe374c reorganization
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diff changeset
258
292a46fe374c reorganization
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diff changeset
259 class ExternalCommandThread:
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diff changeset
260 @staticmethod
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diff changeset
261 def ExternalCommandFunction(arg, stop_event, command, env):
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diff changeset
262 external = subprocess.Popen(command, env = env)
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diff changeset
263
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diff changeset
264 while (not stop_event.is_set()):
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diff changeset
265 error = external.poll()
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parents: 3
diff changeset
266 if error != None:
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diff changeset
267 # http://stackoverflow.com/a/1489838/881731
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diff changeset
268 os._exit(-1)
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diff changeset
269 stop_event.wait(0.1)
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parents: 3
diff changeset
270
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diff changeset
271 print('Stopping the external command')
4
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diff changeset
272 external.terminate()
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3670535fbd4b fix external thread
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diff changeset
273 external.communicate() # Wait for the command to stop
4
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diff changeset
274
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diff changeset
275 def __init__(self, command, env = None):
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diff changeset
276 self.thread_stop = threading.Event()
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diff changeset
277 self.thread = threading.Thread(target = self.ExternalCommandFunction,
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diff changeset
278 args = (10, self.thread_stop, command, env))
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diff changeset
279 #self.daemon = True
4
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diff changeset
280 self.thread.start()
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diff changeset
281
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diff changeset
282 def stop(self):
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diff changeset
283 self.thread_stop.set()
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diff changeset
284 self.thread.join()