Mercurial > hg > orthanc-tests
annotate Tests/Toolbox.py @ 168:11b7e1fa7aff
fix
| author | am@osimis.io |
|---|---|
| date | Fri, 31 Aug 2018 10:35:09 +0200 |
| parents | 0682740fcfcb |
| children | ed3db6386587 |
| rev | line source |
|---|---|
| 0 | 1 #!/usr/bin/python |
| 2 | |
| 1 | 3 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 4 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
| 1 | 5 # Department, University Hospital of Liege, Belgium |
|
130
50cd127e5330
upgrade to year 2018
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
100
diff
changeset
|
6 # Copyright (C) 2017-2018 Osimis S.A., Belgium |
| 1 | 7 # |
| 8 # This program is free software: you can redistribute it and/or | |
| 9 # modify it under the terms of the GNU General Public License as | |
| 10 # published by the Free Software Foundation, either version 3 of the | |
| 11 # License, or (at your option) any later version. | |
| 12 # | |
| 13 # This program is distributed in the hope that it will be useful, but | |
| 14 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 15 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 16 # General Public License for more details. | |
| 17 # | |
| 18 # You should have received a copy of the GNU General Public License | |
| 19 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 0 | 20 |
| 21 | |
| 22 import hashlib | |
| 23 import httplib2 | |
| 24 import json | |
| 4 | 25 import os |
| 1 | 26 import re |
| 4 | 27 import signal |
| 1 | 28 import subprocess |
| 4 | 29 import threading |
| 83 | 30 import sys |
| 0 | 31 import time |
| 1 | 32 import zipfile |
| 0 | 33 |
| 3 | 34 from PIL import Image |
| 83 | 35 |
| 36 if (sys.version_info >= (3, 0)): | |
| 37 from urllib.parse import urlencode | |
| 38 from io import StringIO | |
| 39 from io import BytesIO | |
| 40 | |
| 41 else: | |
| 42 from urllib import urlencode | |
| 43 | |
| 44 # http://stackoverflow.com/a/1313868/881731 | |
| 45 try: | |
| 46 from cStringIO import StringIO | |
| 47 except: | |
| 48 from StringIO import StringIO | |
| 3 | 49 |
| 0 | 50 |
| 83 | 51 def _DecodeJson(s): |
| 52 t = s | |
| 53 | |
| 54 if (sys.version_info >= (3, 0)): | |
| 55 try: | |
| 56 t = s.decode() | |
| 57 except: | |
| 58 pass | |
| 59 | |
| 60 try: | |
| 61 return json.loads(t) | |
| 62 except: | |
| 63 return t | |
| 0 | 64 |
| 65 | |
| 13 | 66 def DefineOrthanc(server = 'localhost', |
| 67 restPort = 8042, | |
| 1 | 68 username = None, |
| 69 password = None, | |
| 70 aet = 'ORTHANC', | |
| 71 dicomPort = 4242): | |
| 13 | 72 #m = re.match(r'(http|https)://([^:]+):([^@]+)@([^@]+)', url) |
| 73 #if m != None: | |
| 74 # url = m.groups()[0] + '://' + m.groups()[3] | |
| 75 # username = m.groups()[1] | |
| 76 # password = m.groups()[2] | |
| 0 | 77 |
| 13 | 78 #if not url.endswith('/'): |
| 79 # url += '/' | |
| 0 | 80 |
| 1 | 81 return { |
| 13 | 82 'Server' : server, |
| 83 'Url' : 'http://%s:%d/' % (server, restPort), | |
| 1 | 84 'Username' : username, |
| 85 'Password' : password, | |
| 86 'DicomAet' : aet, | |
| 87 'DicomPort' : dicomPort | |
| 88 } | |
| 0 | 89 |
| 90 | |
| 91 def _SetupCredentials(orthanc, http): | |
| 1 | 92 if (orthanc['Username'] != None and |
| 93 orthanc['Password'] != None): | |
| 94 http.add_credentials(orthanc['Username'], orthanc['Password']) | |
| 0 | 95 |
| 28 | 96 def DoGetRaw(orthanc, uri, data = {}, body = None, headers = {}): |
| 0 | 97 d = '' |
| 98 if len(data.keys()) > 0: | |
| 99 d = '?' + urlencode(data) | |
| 100 | |
| 101 http = httplib2.Http() | |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
13
diff
changeset
|
102 http.follow_redirects = False |
| 0 | 103 _SetupCredentials(orthanc, http) |
| 104 | |
| 1 | 105 resp, content = http.request(orthanc['Url'] + uri + d, 'GET', body = body, |
| 0 | 106 headers = headers) |
| 28 | 107 return (resp, content) |
| 108 | |
| 109 | |
| 110 def DoGet(orthanc, uri, data = {}, body = None, headers = {}): | |
| 111 (resp, content) = DoGetRaw(orthanc, uri, data = data, body = body, headers = headers) | |
| 112 | |
| 0 | 113 if not (resp.status in [ 200 ]): |
| 114 raise Exception(resp.status) | |
| 115 else: | |
| 83 | 116 return _DecodeJson(content) |
| 0 | 117 |
| 118 def _DoPutOrPost(orthanc, uri, method, data, contentType, headers): | |
| 119 http = httplib2.Http() | |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
13
diff
changeset
|
120 http.follow_redirects = False |
| 0 | 121 _SetupCredentials(orthanc, http) |
| 122 | |
| 83 | 123 if isinstance(data, (str, bytearray, bytes)): |
| 0 | 124 body = data |
| 125 if len(contentType) != 0: | |
| 126 headers['content-type'] = contentType | |
| 127 else: | |
| 128 body = json.dumps(data) | |
| 129 headers['content-type'] = 'application/json' | |
| 130 | |
| 131 headers['expect'] = '' | |
| 132 | |
| 1 | 133 resp, content = http.request(orthanc['Url'] + uri, method, |
| 0 | 134 body = body, |
| 135 headers = headers) | |
| 136 if not (resp.status in [ 200, 302 ]): | |
| 137 raise Exception(resp.status) | |
| 138 else: | |
| 83 | 139 return _DecodeJson(content) |
| 0 | 140 |
| 141 def DoDelete(orthanc, uri): | |
| 142 http = httplib2.Http() | |
|
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
13
diff
changeset
|
143 http.follow_redirects = False |
| 0 | 144 _SetupCredentials(orthanc, http) |
| 145 | |
| 1 | 146 resp, content = http.request(orthanc['Url'] + uri, 'DELETE') |
| 0 | 147 if not (resp.status in [ 200 ]): |
| 148 raise Exception(resp.status) | |
| 149 else: | |
| 83 | 150 return _DecodeJson(content) |
| 0 | 151 |
| 152 def DoPut(orthanc, uri, data = {}, contentType = ''): | |
| 10 | 153 return _DoPutOrPost(orthanc, uri, 'PUT', data, contentType, {}) |
| 0 | 154 |
| 155 def DoPost(orthanc, uri, data = {}, contentType = '', headers = {}): | |
| 156 return _DoPutOrPost(orthanc, uri, 'POST', data, contentType, headers) | |
| 157 | |
| 13 | 158 def GetDatabasePath(filename): |
| 159 return os.path.join(os.path.dirname(__file__), '..', 'Database', filename) | |
| 160 | |
| 0 | 161 def UploadInstance(orthanc, filename): |
| 83 | 162 with open(GetDatabasePath(filename), 'rb') as f: |
| 163 d = f.read() | |
| 164 | |
| 0 | 165 return DoPost(orthanc, '/instances', d, 'application/dicom') |
| 166 | |
| 167 def UploadFolder(orthanc, path): | |
| 13 | 168 for i in os.listdir(GetDatabasePath(path)): |
| 1 | 169 try: |
| 170 UploadInstance(orthanc, os.path.join(path, i)) | |
| 171 except: | |
| 172 pass | |
| 0 | 173 |
| 174 def DropOrthanc(orthanc): | |
| 175 # Reset the Lua callbacks | |
| 176 DoPost(orthanc, '/tools/execute-script', 'function OnStoredInstance(instanceId, tags, metadata) end', 'application/lua') | |
| 177 | |
| 178 DoDelete(orthanc, '/exports') | |
| 179 | |
| 180 for s in DoGet(orthanc, '/patients'): | |
| 181 DoDelete(orthanc, '/patients/%s' % s) | |
| 182 | |
| 183 def ComputeMD5(data): | |
| 184 m = hashlib.md5() | |
| 185 m.update(data) | |
| 186 return m.hexdigest() | |
| 187 | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
44
diff
changeset
|
188 def GetImage(orthanc, uri, headers = {}): |
| 0 | 189 # http://www.pythonware.com/library/pil/handbook/introduction.htm |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
44
diff
changeset
|
190 data = DoGet(orthanc, uri, headers = headers) |
| 83 | 191 if (sys.version_info >= (3, 0)): |
| 192 return Image.open(BytesIO(data)) | |
| 193 else: | |
| 194 return Image.open(StringIO(data)) | |
| 0 | 195 |
| 196 def GetArchive(orthanc, uri): | |
| 197 # http://stackoverflow.com/a/1313868/881731 | |
| 198 s = DoGet(orthanc, uri) | |
| 83 | 199 |
| 200 if (sys.version_info >= (3, 0)): | |
| 201 return zipfile.ZipFile(BytesIO(s), "r") | |
| 202 else: | |
| 203 return zipfile.ZipFile(StringIO(s), "r") | |
| 0 | 204 |
| 1 | 205 def IsDefinedInLua(orthanc, name): |
| 0 | 206 s = DoPost(orthanc, '/tools/execute-script', 'print(type(%s))' % name, 'application/lua') |
| 207 return (s.strip() != 'nil') | |
| 208 | |
| 1 | 209 def WaitEmpty(orthanc): |
| 0 | 210 while True: |
| 1 | 211 if len(DoGet(orthanc, '/instances')) == 0: |
| 0 | 212 return |
| 213 time.sleep(0.1) | |
| 214 | |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
215 def WaitJobDone(orthanc, job): |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
216 while True: |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
217 s = DoGet(orthanc, '/jobs/%s' % job) ['State'] |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
218 |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
219 if s == 'Success': |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
220 return True |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
221 elif s == 'Failure': |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
222 return False |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
223 |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
224 time.sleep(0.1) |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
225 |
| 138 | 226 def MonitorJob(orthanc, func): # "func" is a lambda |
| 227 a = set(DoGet(orthanc, '/jobs')) | |
| 228 func() | |
| 229 b = set(DoGet(orthanc, '/jobs')) | |
| 230 | |
| 231 diff = list(b - a) | |
| 232 if len(diff) != 1: | |
| 233 print('No job was created!') | |
| 234 return False | |
| 235 else: | |
| 236 return WaitJobDone(orthanc, diff[0]) | |
| 237 | |
| 1 | 238 def GetDockerHostAddress(): |
| 239 route = subprocess.check_output([ '/sbin/ip', 'route' ]) | |
| 240 m = re.search(r'default via ([0-9.]+)', route) | |
| 241 if m == None: | |
| 242 return 'localhost' | |
| 243 else: | |
| 244 return m.groups()[0] | |
| 4 | 245 |
|
44
ffa542cce638
Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
246 def FindExecutable(name): |
|
ffa542cce638
Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
247 p = os.path.join('/usr/local/bin', name) |
|
ffa542cce638
Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
248 if os.path.isfile(p): |
|
ffa542cce638
Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
249 return p |
|
ffa542cce638
Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
250 |
|
ffa542cce638
Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
251 p = os.path.join('/usr/local/sbin', name) |
|
ffa542cce638
Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
252 if os.path.isfile(p): |
|
ffa542cce638
Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
253 return p |
|
ffa542cce638
Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
254 |
|
ffa542cce638
Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
255 return name |
| 4 | 256 |
| 257 | |
| 258 | |
| 259 class ExternalCommandThread: | |
| 260 @staticmethod | |
| 261 def ExternalCommandFunction(arg, stop_event, command, env): | |
| 262 external = subprocess.Popen(command, env = env) | |
| 263 | |
| 264 while (not stop_event.is_set()): | |
| 265 error = external.poll() | |
| 266 if error != None: | |
| 267 # http://stackoverflow.com/a/1489838/881731 | |
| 268 os._exit(-1) | |
| 269 stop_event.wait(0.1) | |
| 270 | |
| 83 | 271 print('Stopping the external command') |
| 4 | 272 external.terminate() |
| 9 | 273 external.communicate() # Wait for the command to stop |
| 4 | 274 |
| 275 def __init__(self, command, env = None): | |
| 276 self.thread_stop = threading.Event() | |
| 277 self.thread = threading.Thread(target = self.ExternalCommandFunction, | |
| 278 args = (10, self.thread_stop, command, env)) | |
| 9 | 279 #self.daemon = True |
| 4 | 280 self.thread.start() |
| 281 | |
| 282 def stop(self): | |
| 283 self.thread_stop.set() | |
| 284 self.thread.join() |