Mercurial > hg > orthanc-tests

annotate Tests/GuessPixelDataVR.py @ 611:09fc76fbd46d

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Added tag Orthanc-1.12.3 for changeset ec657d1a62a6
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 31 Jan 2024 13:51:40 +0100
parents 6004be7f70a8
children
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1 #!/usr/bin/env python3
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2
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3 import os
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4 import sys
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5 import pydicom
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6
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7 ROOT = os.path.join(os.path.dirname(__file__), '..', 'Database')
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8
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9 for root, dirs, files in os.walk(ROOT):
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10 for f in files:
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11 path = os.path.join(root, f)
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12
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13 try:
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14 ds = pydicom.dcmread(path)
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15 except:
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16 continue
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17
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18 ts = ds.file_meta.TransferSyntaxUID
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19
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20 if not 'PixelData' in ds:
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21 print(path, '=> no pixel data')
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22 continue
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23
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24 print(path)
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25
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26 if ts == '1.2.840.10008.1.2':
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27 # Implicit VR Endian
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28 # https://dicom.nema.org/medical/dicom/current/output/chtml/part05/chapter_A.html#sect_A.1
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29 assert(ds['PixelData'].VR == 'OW')
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30
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31 elif ts in [ '1.2.840.10008.1.2.1',
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32 '1.2.840.10008.1.2.2' ]:
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33 # Explicit VR Little Endian
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34 # https://dicom.nema.org/medical/dicom/current/output/chtml/part05/sect_A.2.html
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35
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36 # DICOM Big Endian Transfer Syntax (Explicit VR) - Retired, but same rule
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37 # https://dicom.nema.org/medical/dicom/2016b/output/chtml/part05/sect_A.3.html
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38
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39 if f in [ 'PilatesArgenturGEUltrasoundOsiriX.dcm',
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40 'KarstenHilbertRF.dcm',
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41 'Issue143.dcm' ]:
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42 continue
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43
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44 if ds['BitsAllocated'].value <= 8:
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45 assert(ds['PixelData'].VR == 'OB')
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46 else:
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47 assert(ds['PixelData'].VR == 'OW')
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48
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49 else:
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50 if (('Beaufix/IM-' in path or
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51 'Comunix/Ct/IM-' in path or
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52 'Comunix/Pet/IM-' in path or
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53 'Knee/T1/IM-' in path or
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54 'Knee/T2/IM-' in path) and
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55 ts == '1.2.840.10008.1.2.4.91'):
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56 # JPEG2k should be "OB", but this is not the case of these modalities
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57 continue
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58
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59 assert(ds['PixelData'].VR == 'OB')
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