Mercurial > hg > orthanc-stone
changeset 678:6f10f9a6676a
turning DicomVolumeImage into a bean class
author | Sebastien Jodogne <s.jodogne@gmail.com> |
---|---|
date | Thu, 16 May 2019 11:20:43 +0200 |
parents | 3805ffa2833d |
children | 979963fd3725 |
files | Samples/Sdl/Loader.cpp |
diffstat | 1 files changed, 77 insertions(+), 43 deletions(-) [+] |
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--- a/Samples/Sdl/Loader.cpp Wed May 15 18:35:43 2019 +0200 +++ b/Samples/Sdl/Loader.cpp Thu May 16 11:20:43 2019 +0200 @@ -1486,42 +1486,34 @@ std::auto_ptr<OrthancStone::ImageBuffer3D> image_; std::vector<DicomInstanceParameters*> slices_; - static const DicomInstanceParameters& - GetSliceParameters(const OrthancStone::SlicesSorter& slices, - size_t index) + void CheckSlice(size_t index, + const DicomInstanceParameters& reference) const { - return dynamic_cast<const DicomInstanceParameters&>(slices.GetSlicePayload(index)); - } - - static void CheckSlice(const OrthancStone::SlicesSorter& slices, - size_t index, - const OrthancStone::CoordinateSystem3D& reference, - const DicomInstanceParameters& a) - { - const OrthancStone::CoordinateSystem3D& slice = slices.GetSliceGeometry(index); - const DicomInstanceParameters& b = GetSliceParameters(slices, index); + const DicomInstanceParameters& slice = *slices_[index]; - if (!OrthancStone::GeometryToolbox::IsParallel(reference.GetNormal(), slice.GetNormal())) + if (!OrthancStone::GeometryToolbox::IsParallel( + reference.GetGeometry().GetNormal(), + slice.GetGeometry().GetNormal())) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadGeometry, "A slice in the volume image is not parallel to the others"); } - if (a.GetExpectedPixelFormat() != b.GetExpectedPixelFormat()) + if (reference.GetExpectedPixelFormat() != slice.GetExpectedPixelFormat()) { throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat, "The pixel format changes across the slices of the volume image"); } - if (a.GetImageInformation().GetWidth() != b.GetImageInformation().GetWidth() || - a.GetImageInformation().GetHeight() != b.GetImageInformation().GetHeight()) + if (reference.GetImageInformation().GetWidth() != slice.GetImageInformation().GetWidth() || + reference.GetImageInformation().GetHeight() != slice.GetImageInformation().GetHeight()) { throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageSize, "The width/height of slices are not constant in the volume image"); } - if (!OrthancStone::LinearAlgebra::IsNear(a.GetPixelSpacingX(), b.GetPixelSpacingX()) || - !OrthancStone::LinearAlgebra::IsNear(a.GetPixelSpacingY(), b.GetPixelSpacingY())) + if (!OrthancStone::LinearAlgebra::IsNear(reference.GetPixelSpacingX(), slice.GetPixelSpacingX()) || + !OrthancStone::LinearAlgebra::IsNear(reference.GetPixelSpacingY(), slice.GetPixelSpacingY())) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadGeometry, "The pixel spacing of the slices change across the volume image"); @@ -1529,25 +1521,25 @@ } - static void CheckVolume(const OrthancStone::SlicesSorter& slices) + void CheckVolume() const { - for (size_t i = 0; i < slices.GetSlicesCount(); i++) + for (size_t i = 0; i < slices_.size(); i++) { - if (GetSliceParameters(slices, i).GetImageInformation().GetNumberOfFrames() != 1) + assert(slices_[i] != NULL); + if (slices_[i]->GetImageInformation().GetNumberOfFrames() != 1) { throw Orthanc::OrthancException(Orthanc::ErrorCode_BadGeometry, "This class does not support multi-frame images"); } } - if (slices.GetSlicesCount() != 0) + if (slices_.size() != 0) { - const OrthancStone::CoordinateSystem3D& reference = slices.GetSliceGeometry(0); - const DicomInstanceParameters& dicom = GetSliceParameters(slices, 0); + const DicomInstanceParameters& reference = *slices_[0]; - for (size_t i = 1; i < slices.GetSlicesCount(); i++) + for (size_t i = 1; i < slices_.size(); i++) { - CheckSlice(slices, i, reference, dicom); + CheckSlice(i, reference); } } } @@ -1586,27 +1578,39 @@ "Cannot sort the 3D slices of a DICOM series"); } - slices_.reserve(slices.GetSlicesCount()); - - for (size_t i = 0; i < slices.GetSlicesCount(); i++) + if (slices.GetSlicesCount() == 0) + { + // Empty volume + image_.reset(new OrthancStone::ImageBuffer3D(Orthanc::PixelFormat_Grayscale8, 0, 0, 0, + false /* don't compute range */)); + } + else { - slices_.push_back(new DicomInstanceParameters(GetSliceParameters(slices, i))); - } + slices_.reserve(slices.GetSlicesCount()); - CheckVolume(slices); + for (size_t i = 0; i < slices.GetSlicesCount(); i++) + { + const DicomInstanceParameters& slice = + dynamic_cast<const DicomInstanceParameters&>(slices.GetSlicePayload(i)); + slices_.push_back(new DicomInstanceParameters(slice)); + } - const double spacingZ = slices.ComputeSpacingBetweenSlices(); - LOG(INFO) << "Computed spacing between slices: " << spacingZ << "mm"; + CheckVolume(); + + const double spacingZ = slices.ComputeSpacingBetweenSlices(); + LOG(INFO) << "Computed spacing between slices: " << spacingZ << "mm"; - const DicomInstanceParameters& parameters = GetSliceParameters(slices, 0); + const DicomInstanceParameters& parameters = *slices_[0]; - image_.reset(new OrthancStone::ImageBuffer3D(parameters.GetExpectedPixelFormat(), - parameters.GetImageInformation().GetWidth(), - parameters.GetImageInformation().GetHeight(), - slices.GetSlicesCount(), false /* don't compute range */)); + image_.reset(new OrthancStone::ImageBuffer3D(parameters.GetExpectedPixelFormat(), + parameters.GetImageInformation().GetWidth(), + parameters.GetImageInformation().GetHeight(), + slices.GetSlicesCount(), false /* don't compute range */)); - image_->SetAxialGeometry(slices.GetSliceGeometry(0)); - image_->SetVoxelDimensions(parameters.GetPixelSpacingX(), parameters.GetPixelSpacingY(), spacingZ); + image_->SetAxialGeometry(slices.GetSliceGeometry(0)); + image_->SetVoxelDimensions(parameters.GetPixelSpacingX(), parameters.GetPixelSpacingY(), spacingZ); + } + image_->Clear(); } @@ -1625,7 +1629,37 @@ { return *image_; } - } + } + + size_t GetSlicesCount() const + { + if (!IsGeometryReady()) + { + throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); + } + else + { + assert(slices_.size() == image_->GetDepth()); + return slices_.size(); + } + } + + const DicomInstanceParameters& GetSlice(size_t index) const + { + if (!IsGeometryReady()) + { + throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls); + } + else if (index >= slices_.size()) + { + throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); + } + else + { + assert(slices_.size() == image_->GetDepth()); + return *slices_[index]; + } + } };