Mercurial > hg > orthanc-stone
changeset 1297:6ab03e429f06 broker
integration mainline->broker
author | Sebastien Jodogne <s.jodogne@gmail.com> |
---|---|
date | Sun, 23 Feb 2020 15:32:24 +0100 |
parents | 68579a31eeb4 (current diff) 86400fa16091 (diff) |
children | c38c89684d83 |
files | Applications/Generic/GuiAdapter.cpp Applications/Generic/GuiAdapter.h Framework/Deprecated/Loaders/OrthancMultiframeVolumeLoader.cpp Framework/Messages/ICallable.h Framework/Radiography/RadiographyScene.cpp Framework/Scene2D/FloatTextureSceneLayer.cpp Framework/Scene2D/Internals/OpenGLLookupTableTextureRenderer.cpp Framework/Toolbox/DicomInstanceParameters.cpp Framework/Viewport/WebAssemblyViewport.cpp Framework/Volumes/DicomVolumeImageMPRSlicer.cpp Resources/CMake/OrthancStoneConfiguration.cmake |
diffstat | 15 files changed, 951 insertions(+), 30 deletions(-) [+] |
line wrap: on
line diff
--- a/Applications/Generic/GuiAdapter.cpp Tue Feb 04 15:24:03 2020 +0100 +++ b/Applications/Generic/GuiAdapter.cpp Sun Feb 23 15:32:24 2020 +0100 @@ -36,11 +36,6 @@ namespace OrthancStone { - void GuiAdapter::RegisterWidget(boost::shared_ptr<IGuiAdapterWidget> widget) - { - widgets_.push_back(widget); - } - std::ostream& operator<<( std::ostream& os, const GuiAdapterKeyboardEvent& event) {
--- a/Applications/Generic/GuiAdapter.h Tue Feb 04 15:24:03 2020 +0100 +++ b/Applications/Generic/GuiAdapter.h Sun Feb 23 15:32:24 2020 +0100 @@ -233,8 +233,6 @@ instanceCount = 1; } - void RegisterWidget(boost::shared_ptr<IGuiAdapterWidget> widget); - /** emscripten_set_resize_callback("#window", NULL, false, OnWindowResize); @@ -359,21 +357,5 @@ deals with this) */ void ViewportsUpdateSize(); - - std::vector<boost::weak_ptr<IGuiAdapterWidget> > widgets_; - - template<typename F> void VisitWidgets(F func) - { - for (size_t i = 0; i < widgets_.size(); i++) - { - boost::shared_ptr<IGuiAdapterWidget> widget = widgets_[i].lock(); - - // TODO: we need to clean widgets! - if (widget.get() != NULL) - { - func(widget); - } - } - } }; }
--- a/Applications/Samples/CMakeLists.txt Tue Feb 04 15:24:03 2020 +0100 +++ b/Applications/Samples/CMakeLists.txt Sun Feb 23 15:32:24 2020 +0100 @@ -251,6 +251,8 @@ add_executable(UnitTests ${GOOGLE_TEST_SOURCES} ${ORTHANC_STONE_ROOT}/UnitTestsSources/GenericToolboxTests.cpp + ${ORTHANC_STONE_ROOT}/UnitTestsSources/ImageToolboxTests.cpp + ${ORTHANC_STONE_ROOT}/UnitTestsSources/PixelTestPatternsTests.cpp ${ORTHANC_STONE_ROOT}/UnitTestsSources/TestCommands.cpp ${ORTHANC_STONE_ROOT}/UnitTestsSources/TestMessageBroker.cpp ${ORTHANC_STONE_ROOT}/UnitTestsSources/TestStrategy.cpp
--- a/Framework/Deprecated/Loaders/OrthancMultiframeVolumeLoader.cpp Tue Feb 04 15:24:03 2020 +0100 +++ b/Framework/Deprecated/Loaders/OrthancMultiframeVolumeLoader.cpp Sun Feb 23 15:32:24 2020 +0100 @@ -345,7 +345,6 @@ { OrthancStone::ImageBuffer3D& target = volume_->GetPixelData(); - const uint64_t bpp = target.GetBytesPerPixel(); const uint64_t width = target.GetWidth(); const uint64_t height = target.GetHeight(); const uint64_t depth = target.GetDepth();
--- a/Framework/Radiography/RadiographyScene.cpp Tue Feb 04 15:24:03 2020 +0100 +++ b/Framework/Radiography/RadiographyScene.cpp Sun Feb 23 15:32:24 2020 +0100 @@ -490,8 +490,8 @@ size_t index = dynamic_cast<const Orthanc::SingleValueObject<size_t>&> (message.GetPayload()).GetValue(); - LOG(INFO) << "JSON received: " << message.GetUri().c_str() - << " (" << message.GetAnswerSize() << " bytes) for layer " << index; + VLOG(1) << "JSON received: " << message.GetUri().c_str() + << " (" << message.GetAnswerSize() << " bytes) for layer " << index; Layers::iterator layer = layers_.find(index); if (layer != layers_.end()) @@ -519,8 +519,8 @@ { size_t index = dynamic_cast<const Orthanc::SingleValueObject<size_t>&>(message.GetPayload()).GetValue(); - LOG(INFO) << "DICOM frame received: " << message.GetUri().c_str() - << " (" << message.GetAnswerSize() << " bytes) for layer " << index; + VLOG(1) << "DICOM frame received: " << message.GetUri().c_str() + << " (" << message.GetAnswerSize() << " bytes) for layer " << index; Layers::iterator layer = layers_.find(index); if (layer != layers_.end())
--- a/Framework/Scene2D/FloatTextureSceneLayer.cpp Tue Feb 04 15:24:03 2020 +0100 +++ b/Framework/Scene2D/FloatTextureSceneLayer.cpp Sun Feb 23 15:32:24 2020 +0100 @@ -21,6 +21,8 @@ #include "FloatTextureSceneLayer.h" +#include "../Toolbox/ImageToolbox.h" + #include <Core/Images/Image.h> #include <Core/Images/ImageProcessing.h> #include <Core/OrthancException.h> @@ -39,6 +41,7 @@ false)); Orthanc::ImageProcessing::Convert(*t, texture); + SetTexture(t.release()); }
--- a/Framework/Scene2D/Internals/OpenGLLookupTableTextureRenderer.cpp Tue Feb 04 15:24:03 2020 +0100 +++ b/Framework/Scene2D/Internals/OpenGLLookupTableTextureRenderer.cpp Sun Feb 23 15:32:24 2020 +0100 @@ -21,6 +21,9 @@ #include "OpenGLLookupTableTextureRenderer.h" +#include "../../Toolbox/ImageToolbox.h" + + #include <Core/OrthancException.h> namespace OrthancStone
--- a/Framework/Toolbox/DicomInstanceParameters.cpp Tue Feb 04 15:24:03 2020 +0100 +++ b/Framework/Toolbox/DicomInstanceParameters.cpp Sun Feb 23 15:32:24 2020 +0100 @@ -24,6 +24,7 @@ #include "../Scene2D/ColorTextureSceneLayer.h" #include "../Scene2D/FloatTextureSceneLayer.h" #include "../Toolbox/GeometryToolbox.h" +#include "../Toolbox/ImageToolbox.h" #include <Core/Images/Image.h> #include <Core/Images/ImageProcessing.h> @@ -263,7 +264,6 @@ distance <= thickness_ / 2.0); } - void DicomInstanceParameters::Data::ApplyRescaleAndDoseScaling(Orthanc::ImageAccessor& image, bool useDouble) const { @@ -375,6 +375,7 @@ false)); Orthanc::ImageProcessing::Convert(*converted, pixelData); + // Correct rescale slope/intercept if need be //data_.ApplyRescaleAndDoseScaling(*converted, (pixelData.GetFormat() == Orthanc::PixelFormat_Grayscale32)); data_.ApplyRescaleAndDoseScaling(*converted, false);
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Framework/Toolbox/ImageToolbox.cpp Sun Feb 23 15:32:24 2020 +0100 @@ -0,0 +1,292 @@ +/** + * Stone of Orthanc + * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * Copyright (C) 2017-2020 Osimis S.A., Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + +#include "ImageToolbox.h" + +#include "../StoneException.h" + +#include <Core/Images/ImageProcessing.h> +#include <Core/Images/PixelTraits.h> + +#include <Core/Logging.h> +#include <Core/OrthancException.h> + +#include <boost/static_assert.hpp> +#include <boost/type_traits.hpp> + +#include <vector> + +namespace OrthancStone +{ + namespace + { + using Orthanc::PixelTraits; + using Orthanc::PixelFormat; + using Orthanc::ImageAccessor; + using Orthanc::PixelFormat; + + template<typename Orthanc::PixelFormat Format> + class PixelBinner + { + // "PixelBinner requires an arithmetic (integer or floating-point) pixel format" + typedef typename Orthanc::PixelTraits<Format>::PixelType PixelType; + BOOST_STATIC_ASSERT(boost::is_arithmetic<PixelType>::value); + + public: + PixelBinner(HistogramData& hd, double minValue, double maxValue) + : hd_(hd) + , minValue_(minValue) + , maxValue_(maxValue) + , division_(1.0 / hd_.binSize) + { + ORTHANC_ASSERT(hd_.bins.size() > 0); + ORTHANC_ASSERT(maxValue > minValue); + } + + ORTHANC_FORCE_INLINE void AddPixel(PixelType p) + { + if (p <= minValue_) + { + hd_.bins[0] += 1; + } + else if (p >= maxValue_) + { + hd_.bins.back() += 1; + } + else + { + double distanceFromMin = p - minValue_; + size_t binIndex = static_cast<size_t>( + std::floor(distanceFromMin * division_)); + if (binIndex >= hd_.bins.size()) + binIndex = hd_.bins.size() - 1; + hd_.bins[binIndex] += 1; + } + } + private: + HistogramData& hd_; + double minValue_; + double maxValue_; + double division_; + }; + + template<PixelFormat Format> + struct Histogram + { + typedef typename PixelTraits<Format>::PixelType PixelType; + + static void Apply(const Orthanc::ImageAccessor& img, HistogramData& hd, + double minValue = 0, + double maxValue = 0) + { + ORTHANC_ASSERT(Format == img.GetFormat(), + "Internal error. Wrong template histogram type"); + + const size_t height = img.GetHeight(); + const size_t width = img.GetHeight(); + + if ((minValue == 0) && (maxValue == 0)) + { + throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented); + //ORTHANC_ASSERT(boost::is_integral<PixelType>::value, + // "Min and max values must be supplied for float-based histogram"); + // + //PixelTraits<Format>::SetMinValue(minValue); + //PixelTraits<Format>::SetMaxValue(maxValue); + } + + hd.minValue = minValue; + + // the following code is not really pretty but ensures + size_t numBins = static_cast<size_t>( + std::ceil((maxValue - minValue) / hd.binSize)); + + hd.bins.resize(numBins); + std::fill(hd.bins.begin(), hd.bins.end(), 0); + + PixelBinner<Format> binner(hd, minValue, maxValue); + for (uint32_t y = 0; y < height; ++y) + { + const PixelType* curPix = reinterpret_cast<const PixelType*>( + img.GetConstRow(y)); + + for (uint32_t x = 0; x < width; x++, curPix++) + { + binner.AddPixel(*curPix); + } + } + } + }; + + + template<PixelFormat Format> + struct ComputeMinMax__ + { + typedef typename PixelTraits<Format>::PixelType PixelType; + + static void Apply(const Orthanc::ImageAccessor& img, + PixelType& minValue, PixelType& maxValue) + { + ORTHANC_ASSERT(Format == img.GetFormat(), + "Internal error. Wrong template histogram type"); + + const size_t height = img.GetHeight(); + const size_t width = img.GetHeight(); + + if (height * width == 0) + { + throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat); + } + + // min and max are crossed below. Think about it. This is OK :) + PixelTraits<Format>::SetMaxValue(minValue); + PixelTraits<Format>::SetMinValue(maxValue); + + for (uint32_t y = 0; y < height; ++y) + { + const PixelType* curPix = reinterpret_cast<const PixelType*>( + img.GetConstRow(y)); + + for (uint32_t x = 0; x < width; x++, curPix++) + { + if (*curPix <= minValue) + minValue = *curPix; + if (*curPix >= maxValue) + maxValue = *curPix; + } + } + } + }; + + template<PixelFormat Format> + void ComputeMinMax_(const Orthanc::ImageAccessor& img, + double& minValue, double& maxValue) + { + typedef typename PixelTraits<Format>::PixelType PixelType; + PixelType minValuePix = PixelType(); + PixelType maxValuePix = PixelType(); + ComputeMinMax__<Format>::Apply(img, minValuePix, maxValuePix); + minValue = static_cast<double>(minValuePix); + maxValue = static_cast<double>(maxValuePix); + } + + template<PixelFormat Format> + void ComputeHistogram_(const Orthanc::ImageAccessor& img, HistogramData& hd) + { + typedef typename PixelTraits<Format>::PixelType PixelType; + PixelType minValue = PixelType(); + PixelType maxValue = PixelType(); + ComputeMinMax__<Format>::Apply(img, minValue, maxValue); + + // make bins a little bigger to center integer pixel values + Histogram<Format>::Apply(img, hd, + static_cast<double>(minValue) - 0.5, + static_cast<double>(maxValue) + 0.5); + } + } + + void ComputeHistogram(const Orthanc::ImageAccessor& img, + HistogramData& hd, double binSize) + { + using namespace Orthanc; + + hd.binSize = binSize; + + // dynamic/static bridge + switch (img.GetFormat()) + { + case PixelFormat_Grayscale8: + ComputeHistogram_<PixelFormat_Grayscale8> (img, hd); + break; + case PixelFormat_Grayscale16: + ComputeHistogram_<PixelFormat_Grayscale16> (img, hd); + break; + case PixelFormat_SignedGrayscale16: + ComputeHistogram_<PixelFormat_SignedGrayscale16>(img, hd); + break; + case PixelFormat_Float32: + ComputeHistogram_<PixelFormat_Float32> (img, hd); + break; + case PixelFormat_Grayscale32: + ComputeHistogram_<PixelFormat_Grayscale32> (img, hd); + break; + case PixelFormat_Grayscale64: + ComputeHistogram_<PixelFormat_Grayscale64> (img, hd); + break; + default: + throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat); + } + } + + void ComputeMinMax(const Orthanc::ImageAccessor& img, + double& minValue, double& maxValue) + { + using namespace Orthanc; + + // dynamic/static bridge + switch (img.GetFormat()) + { + case PixelFormat_Grayscale8: + ComputeMinMax_<PixelFormat_Grayscale8> (img, minValue, maxValue); + break; + case PixelFormat_Grayscale16: + ComputeMinMax_<PixelFormat_Grayscale16> (img, minValue, maxValue); + break; + case PixelFormat_SignedGrayscale16: + ComputeMinMax_<PixelFormat_SignedGrayscale16>(img, minValue, maxValue); + break; + case PixelFormat_Float32: + ComputeMinMax_<PixelFormat_Float32> (img, minValue, maxValue); + break; + case PixelFormat_Grayscale32: + ComputeMinMax_<PixelFormat_Grayscale32> (img, minValue, maxValue); + break; + case PixelFormat_Grayscale64: + ComputeMinMax_<PixelFormat_Grayscale64> (img, minValue, maxValue); + break; + default: + throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat); + } + + } + + void DumpHistogramResult(std::string& s, const HistogramData& hd) + { + std::stringstream ss; + ss << "Histogram:\n"; + ss << "==========\n"; + ss << "\n"; + ss << "minValue : " << hd.minValue << "\n"; + ss << "binSize : " << hd.binSize << "\n"; + ss << "bins.size() : " << hd.bins.size() << "\n"; + ss << "bins :\n"; + double curBinStart = hd.minValue; + size_t pixCount = 0; + for (size_t i = 0; i < hd.bins.size(); ++i) + { + ss << "index: " << i << " (from " << curBinStart << " to " + << curBinStart + hd.binSize << ") : " << hd.bins[i] << " pixels\n"; + curBinStart += hd.binSize; + pixCount += hd.bins[i]; + } + ss << "total pix. count: " << pixCount << "\n"; + s = ss.str(); + } +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Framework/Toolbox/ImageToolbox.h Sun Feb 23 15:32:24 2020 +0100 @@ -0,0 +1,76 @@ +/** + * Stone of Orthanc + * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * Copyright (C) 2017-2020 Osimis S.A., Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#pragma once + +#include "../StoneEnumerations.h" +#include "LinearAlgebra.h" + +#include <Core/Images/ImageAccessor.h> + +namespace OrthancStone +{ + + /** + This structure represents the result of an histogram computation + + bins[0] contains the values in [minValue , minValue + binSize [ + bins[1] contains the values in [minValue + binSize, minValue + 2*binSize [ + bins[2] contains the values in [minValue + 2*binSize, minValue + 3*binSize [ + ... + bins[N-1] contains the values in [minValue + (N-1)*binSize, minValue + N*binSize [ + + */ + struct HistogramData + { + std::vector<size_t> bins; + double minValue; + double binSize; + }; + + /** + Dumps the supplied histogram to the supplied strings + */ + void DumpHistogramResult(std::string& s, const HistogramData& hd); + + /** + This will compute the histogram of the supplied image (count the number of + pixels). + + The image must contain arithmetic pixels (that is, having a single component, + integer or float). Compound pixel types like RGB, YUV are not supported and + will cause this function to throw an exception. + + The range of available values will be split in sets of size `binSize`, and + each set will contain the number of pixels in the given bin + (see HistogramResult above). + */ + void ComputeHistogram(const Orthanc::ImageAccessor& img, + HistogramData& hd, double binSize); + + + /** + Computes the min max values in an image + */ + void ComputeMinMax(const Orthanc::ImageAccessor& img, + double& minValue, double& maxValue); + +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Framework/Toolbox/PixelTestPatterns.h Sun Feb 23 15:32:24 2020 +0100 @@ -0,0 +1,130 @@ +/** + * Stone of Orthanc + * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * Copyright (C) 2017-2020 Osimis S.A., Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + +// PixelTestPatterns.h + +#pragma once + +#include "../StoneException.h" + +#include <Core/Images/ImageAccessor.h> + +#include <string> +#include <stdint.h> +#include <math.h> + +namespace OrthancStone +{ + namespace PixelTestPatterns + { + template<typename T, typename U> + inline uint8_t byteAddClip(T v1, U v2) + { + double tmp = static_cast<double>(v1) + static_cast<double>(v2); + if (tmp > 255.0) + tmp = 255; + if (tmp < 0.0) + tmp = 0; + return static_cast<uint8_t>(tmp+0.5); + } + + // fills the area with a horizontal gradient. + // leftmost pixels are filled with r0 g0 b0 + // rightmost pixels are filled with r1 g1 b1 + // linear interpolation in-between + inline void fillWithHGradient(Orthanc::ImageAccessor& target, + uint8_t r0, uint8_t g0, uint8_t b0, + uint8_t r1, uint8_t g1, uint8_t b1) + { + if (target.GetFormat() != Orthanc::PixelFormat_RGBA32) { + ORTHANC_ASSERT(false, "Wrong pixel format"); + } + const unsigned int width = target.GetWidth(); + const unsigned int height = target.GetHeight(); + + ORTHANC_ASSERT(width > 0); + ORTHANC_ASSERT(height > 0); + + double invWidth = 1.0 / static_cast<double>(target.GetWidth()); + double rIncr = (static_cast<double>(r1) - static_cast<double>(r0))* invWidth; + double gIncr = (static_cast<double>(g1) - static_cast<double>(g0))* invWidth; + double bIncr = (static_cast<double>(b1) - static_cast<double>(b0))* invWidth; + + for (unsigned int y = 0; y < height; y++) + { + uint8_t r = r0; + uint8_t g = g0; + uint8_t b = b0; + uint8_t* q = reinterpret_cast<uint8_t*>(target.GetRow(y)); + for (unsigned int x = 0; x < width; x++) + { + q[0] = r; + q[1] = g; + q[2] = b; + q[3] = 255; + r = byteAddClip(r, rIncr); + g = byteAddClip(g, gIncr); + b = byteAddClip(b, bIncr); + q += 4; + } + } + } + + inline void fillWithVGradient(Orthanc::ImageAccessor& target, + uint8_t r0, uint8_t g0, uint8_t b0, + uint8_t r1, uint8_t g1, uint8_t b1) + { + if (target.GetFormat() != Orthanc::PixelFormat_RGBA32) { + ORTHANC_ASSERT(false, "Wrong pixel format"); + } + const unsigned int width = target.GetWidth(); + const unsigned int height = target.GetHeight(); + + ORTHANC_ASSERT(width > 0); + ORTHANC_ASSERT(height > 0); + + double invHeight = 1.0 / static_cast<double>(target.GetHeight()); + double rIncr = (static_cast<double>(r1) - static_cast<double>(r0))* invHeight; + double gIncr = (static_cast<double>(g1) - static_cast<double>(g0))* invHeight; + double bIncr = (static_cast<double>(b1) - static_cast<double>(b0))* invHeight; + + uint8_t r = r0; + uint8_t g = g0; + uint8_t b = b0; + for (unsigned int y = 0; y < height; y++) + { + uint8_t* q = reinterpret_cast<uint8_t*>(target.GetRow(y)); + for (unsigned int x = 0; x < width; x++) + { + q[0] = r; + q[1] = g; + q[2] = b; + q[3] = 255; + q += 4; + } + r = byteAddClip(r, rIncr); + g = byteAddClip(g, gIncr); + b = byteAddClip(b, bIncr); + } + } + + } +} +
--- a/Framework/Volumes/DicomVolumeImageMPRSlicer.cpp Tue Feb 04 15:24:03 2020 +0100 +++ b/Framework/Volumes/DicomVolumeImageMPRSlicer.cpp Sun Feb 23 15:32:24 2020 +0100 @@ -23,6 +23,8 @@ #include "../StoneException.h" +#include "../Toolbox/ImageToolbox.h" + #include <Core/OrthancException.h> //#include <Core/Images/PngWriter.h> #include <Core/Images/JpegWriter.h> @@ -79,6 +81,7 @@ { const DicomInstanceParameters& parameters = volume_.GetDicomParameters(); ImageBuffer3D::SliceReader reader(volume_.GetPixelData(), projection_, sliceIndex_); + texture.reset(dynamic_cast<TextureBaseSceneLayer*> (configurator->CreateTextureFromDicom(reader.GetAccessor(), parameters))); } @@ -102,7 +105,7 @@ { texture->SetAngle(atan2(dy, dx)); } - + Vector tmp = volume_.GetGeometry().GetVoxelDimensions(projection_); texture->SetPixelSpacing(tmp[0], tmp[1]);
--- a/Resources/CMake/OrthancStoneConfiguration.cmake Tue Feb 04 15:24:03 2020 +0100 +++ b/Resources/CMake/OrthancStoneConfiguration.cmake Sun Feb 23 15:32:24 2020 +0100 @@ -599,8 +599,12 @@ ${ORTHANC_STONE_ROOT}/Framework/Toolbox/GeometryToolbox.h ${ORTHANC_STONE_ROOT}/Framework/Toolbox/ImageGeometry.cpp ${ORTHANC_STONE_ROOT}/Framework/Toolbox/ImageGeometry.h + ${ORTHANC_STONE_ROOT}/Framework/Toolbox/ImageToolbox.cpp + ${ORTHANC_STONE_ROOT}/Framework/Toolbox/ImageToolbox.h ${ORTHANC_STONE_ROOT}/Framework/Toolbox/LinearAlgebra.cpp ${ORTHANC_STONE_ROOT}/Framework/Toolbox/LinearAlgebra.h + ${ORTHANC_STONE_ROOT}/Framework/Toolbox/PixelTestPatterns.cpp + ${ORTHANC_STONE_ROOT}/Framework/Toolbox/PixelTestPatterns.h ${ORTHANC_STONE_ROOT}/Framework/Toolbox/ShearWarpProjectiveTransform.cpp ${ORTHANC_STONE_ROOT}/Framework/Toolbox/ShearWarpProjectiveTransform.h ${ORTHANC_STONE_ROOT}/Framework/Toolbox/SlicesSorter.cpp @@ -618,6 +622,7 @@ ${ORTHANC_STONE_ROOT}/Framework/Volumes/IVolumeSlicer.h ${ORTHANC_STONE_ROOT}/Framework/Volumes/OrientedVolumeBoundingBox.cpp ${ORTHANC_STONE_ROOT}/Framework/Volumes/OrientedVolumeBoundingBox.h + ${ORTHANC_STONE_ROOT}/Framework/Volumes/VolumeImageGeometry.cpp ${ORTHANC_STONE_ROOT}/Framework/Volumes/VolumeImageGeometry.h ${ORTHANC_STONE_ROOT}/Framework/Volumes/VolumeReslicer.cpp
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/UnitTestsSources/ImageToolboxTests.cpp Sun Feb 23 15:32:24 2020 +0100 @@ -0,0 +1,259 @@ +/** + * Stone of Orthanc + * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * Copyright (C) 2017-2020 Osimis S.A., Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + +#include <Framework/Toolbox/ImageToolbox.h> + +// #include <boost/chrono.hpp> +// #include <boost/lexical_cast.hpp> + +#include <Core/Images/Image.h> +#include <Core/Images/PixelTraits.h> + +#include "stdint.h" + +#include "gtest/gtest.h" + +#include <cmath> + + +TEST(ImageToolbox, SimpleHisto_Grayscale8_BinSize1) +{ + using OrthancStone::HistogramData; + using OrthancStone::DumpHistogramResult; + using OrthancStone::ComputeHistogram; + + const unsigned int W = 16; + const unsigned int H = 16; + + // 256/17 = 15,... + // 256 % 17 = 1 + // 0 will be 16 times + // 1 will be 15 times + // 2 will be 15 times + // ... + // 16 will be 15 times + + size_t pixCounter = 0; + + std::auto_ptr<Orthanc::Image> image(new Orthanc::Image( + Orthanc::PixelFormat_Grayscale8, W, H, false)); + + for (unsigned int y = 0; y < H; ++y) + { + uint8_t* buffer = reinterpret_cast<uint8_t*>(image->GetRow(y)); + for (unsigned int x = 0; x < W; ++x, ++buffer, ++pixCounter) + { + *buffer = static_cast<uint8_t>(pixCounter % 17); + } + } + + HistogramData hd; + ComputeHistogram(*image, hd, 1); + ASSERT_EQ(-0.5, hd.minValue); + ASSERT_EQ(17u, hd.bins.size()); + ASSERT_EQ(16u, hd.bins[0]); + for (size_t i = 1; i < hd.bins.size(); ++i) + ASSERT_EQ(15u, hd.bins[i]); +} + +TEST(ImageToolbox, SimpleHisto_Grayscale8_BinSize1_FormatString) +{ + using OrthancStone::HistogramData; + using OrthancStone::DumpHistogramResult; + using OrthancStone::ComputeHistogram; + + const unsigned int W = 16; + const unsigned int H = 16; + + // 256/17 = 15,... + // 256 % 17 = 1 + // 0 will be 16 times + // 1 will be 15 times + // 2 will be 15 times + // ... + // 16 will be 15 times + + size_t pixCounter = 0; + + std::auto_ptr<Orthanc::Image> image(new Orthanc::Image( + Orthanc::PixelFormat_Grayscale8, W, H, false)); + + for (unsigned int y = 0; y < H; ++y) + { + uint8_t* buffer = reinterpret_cast<uint8_t*>(image->GetRow(y)); + for (unsigned int x = 0; x < W; ++x, ++buffer, ++pixCounter) + { + *buffer = static_cast<uint8_t>(pixCounter % 17); + } + } + + HistogramData hd; + ComputeHistogram(*image, hd, 1); + + // void DumpHistogramResult(std::string& s, const HistogramData& hd) + std::string s; + DumpHistogramResult(s, hd); + std::cout << s; +} + +template<Orthanc::PixelFormat Format> +void SimpleHisto_T_BinSize1_2() +{ + using OrthancStone::HistogramData; + using OrthancStone::DumpHistogramResult; + using OrthancStone::ComputeHistogram; + + const unsigned int W = 16; + const unsigned int H = 16; + + // 256/17 = 15,... + // 256 % 17 = 1 + // 0 will be 16 times + // 1 will be 15 times + // 2 will be 15 times + // ... + // 16 will be 15 times + + size_t pixCounter = 0; + + std::auto_ptr<Orthanc::Image> image(new Orthanc::Image( + Format, W, H, false)); + + typedef typename Orthanc::PixelTraits<Format>::PixelType PixelType; + + PixelType pixValue = 0; + + for (unsigned int y = 0; y < H; ++y) + { + PixelType* buffer = reinterpret_cast<PixelType*>(image->GetRow(y)); + for (unsigned int x = 0; x < W; ++x, ++buffer, ++pixCounter) + { + // 0..99 0..99 0..55 + *buffer = pixValue; + pixValue++; + if (pixValue >= 100) + pixValue = 0; + } + } + + HistogramData hd; + ComputeHistogram(*image, hd, 1); + ASSERT_EQ(-0.5, hd.minValue); + ASSERT_EQ(100u, hd.bins.size()); + for (size_t i = 0; i <= 55; ++i) + ASSERT_EQ(3u, hd.bins[i]); + for (size_t i = 56; i <= 99; ++i) + ASSERT_EQ(2u, hd.bins[i]); +} + +TEST(ImageToolbox, SimpleHisto_Grayscale8_BinSize1_2) +{ + SimpleHisto_T_BinSize1_2<Orthanc::PixelFormat_Grayscale8>(); +} + +TEST(ImageToolbox, SimpleHisto_Grayscale16_BinSize1_2) +{ + SimpleHisto_T_BinSize1_2<Orthanc::PixelFormat_Grayscale16>(); +} + +TEST(ImageToolbox, SimpleHisto_SignedGrayscale16_BinSize1_2) +{ + SimpleHisto_T_BinSize1_2<Orthanc::PixelFormat_SignedGrayscale16>(); +} + +TEST(ImageToolbox, SimpleHisto_Grayscale32_BinSize1_2) +{ + SimpleHisto_T_BinSize1_2<Orthanc::PixelFormat_Grayscale32>(); +} + +template<Orthanc::PixelFormat Format> +void SimpleHisto_T_BinSize10_2() +{ + using OrthancStone::HistogramData; + using OrthancStone::DumpHistogramResult; + using OrthancStone::ComputeHistogram; + + const unsigned int W = 16; + const unsigned int H = 16; + + // 256/17 = 15,... + // 256 % 17 = 1 + // 0 will be 16 times + // 1 will be 15 times + // 2 will be 15 times + // ... + // 16 will be 15 times + + size_t pixCounter = 0; + + std::auto_ptr<Orthanc::Image> image(new Orthanc::Image( + Format, W, H, false)); + + typedef typename Orthanc::PixelTraits<Format>::PixelType PixelType; + + PixelType pixValue = 0; + + for (unsigned int y = 0; y < H; ++y) + { + PixelType* buffer = reinterpret_cast<PixelType*>(image->GetRow(y)); + for (unsigned int x = 0; x < W; ++x, ++buffer, ++pixCounter) + { + // 0..99 0..99 0..55 + *buffer = pixValue; + pixValue++; + if (pixValue >= 100) + pixValue = 0; + } + } + + HistogramData hd; + ComputeHistogram(*image, hd, 10); + ASSERT_EQ(-0.5, hd.minValue); + ASSERT_EQ(10u, hd.bins.size()); + + for (size_t i = 0; i <= 4; ++i) + ASSERT_EQ(30u, hd.bins[i]); + + ASSERT_EQ(26u, hd.bins[5]); + + for (size_t i = 6; i <= 9; ++i) + ASSERT_EQ(20u, hd.bins[i]); +} + +TEST(ImageToolbox, SimpleHisto_Grayscale8_BinSize10_2) +{ + SimpleHisto_T_BinSize10_2<Orthanc::PixelFormat_Grayscale8>(); +} + +TEST(ImageToolbox, SimpleHisto_Grayscale16_BinSize10_2) +{ + SimpleHisto_T_BinSize10_2<Orthanc::PixelFormat_Grayscale16>(); +} + +TEST(ImageToolbox, SimpleHisto_SignedGrayscale16_BinSize10_2) +{ + SimpleHisto_T_BinSize10_2<Orthanc::PixelFormat_SignedGrayscale16>(); +} + +TEST(ImageToolbox, SimpleHisto_Grayscale32_BinSize10_2) +{ + SimpleHisto_T_BinSize10_2<Orthanc::PixelFormat_Grayscale32>(); +} +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/UnitTestsSources/PixelTestPatternsTests.cpp Sun Feb 23 15:32:24 2020 +0100 @@ -0,0 +1,171 @@ +/** + * Stone of Orthanc + * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * Copyright (C) 2017-2020 Osimis S.A., Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + +#include <Core/Images/Image.h> +#include <Core/Images/PngWriter.h> +#include <Framework/Toolbox/PixelTestPatterns.h> + +#include <boost/chrono.hpp> +#include <boost/lexical_cast.hpp> + +#include "gtest/gtest.h" + +#include "stdint.h" + +#include <cmath> + + /* Autogenerated from prout.png */ +static const unsigned char bin2c_SimpleRedBlueHGradient_png[391] = "\211PNG\15\12\32\12\0\0\0\15IHDR\0\0\0\200\0\0\0\200\10\6\0\0\0\303>a\313\0\0\1MIDATx\234\355\322\1\15\3000\0\303\260~\3741o\7\342X\12\203|o{wgev\26Z\3\340\32\0\327\0\270\6\3005\0\256\1p\15\200k\0\\\3\340\32\0\327\0\270\6\3005\0\256\1p\15\200k\0\\\3\340\32\0\327\0\270\6\3005\0\256\1p\15\200k\0\\\3\340\32\0\327\0\270\6\3005\0\256\1p\15\200k\0\\\3\340\32\0\327\0\270\6\3005\0\256\1p\15\200k\0\\\3\340\32\0\327\0\270\6\3005\0\256\1p\15\200k\0\\\3\340\32\0\327\0\270\6\3005\0\256\1p\15\200k\0\\\3\340\32\0\327\0\270\6\3005\0\256\1p\15\200k\0\\\3\340\32\0\327\0\270\6\3005\0\256\1p\15\200k\0\\\3\340\32\0\327\0\270\6\3005\0\256\1p\15\200k\0\\\3\340\32\0\327\0\270\6\3005\0\256\1p\15\200k\0\\\3\340\32\0\327\0\270\6\3005\0\256\1p\15\200k\0\\\3\340\32\0\327\0\270\6\3005\0\256\1p\15\200k\0\\\3\340\32\0\327\0\270\6\3005\0\256\1p\15\200k\0\\\3\340\32\0\327\0\270\6\3005\0\256\1p\15\200k\0\\\3\340\32\0\327\0\270\6\3005\0\256\1p?\314\262\201\3760\355r\262\0\0\0\0IEND\256B`\202"; + +TEST(PixelTestPatterns, SimpleRedHGradient) +{ + std::auto_ptr<Orthanc::Image> texture; + + texture.reset(new Orthanc::Image( + Orthanc::PixelFormat_RGBA32, + 128, + 128, + /*forceMinimalPitch*/false)); + + Orthanc::ImageAccessor target; + texture->GetWriteableAccessor(target); + + OrthancStone::PixelTestPatterns::fillWithHGradient(target,255,0,0,0,0,255); + + Orthanc::PngWriter writer; +#if 0 + writer.WriteToFile("SimpleRedBlueHGradient.png", *texture); +#else + std::string contents; + writer.WriteToMemory(contents, *texture); + + ASSERT_EQ(1u, sizeof(unsigned char)); + ASSERT_EQ(391u, sizeof(bin2c_SimpleRedBlueHGradient_png)); + ASSERT_EQ(390u, contents.size()); + + char* resultPngBytes = &(contents[0]); + + int result = memcmp(resultPngBytes, bin2c_SimpleRedBlueHGradient_png, 390); + ASSERT_EQ(0, result); +#endif +} + +static const unsigned char bin2c_SimpleRedBlueVGradient_png[400] = "\211PNG\15\12\32\12\0\0\0\15IHDR\0\0\0\200\0\0\0\200\10\6\0\0\0\303>a\313\0\0\1VIDATx\234\355\322A\21\3000\14\300\260t7\376\220\327\301\310\303\22\2?|\356\314\35\262\336o\236\355\6\26\31 \316\0q\6\2103@\234\1\342\14\20g\2008\3\304\31 \316\0q\6\2103@\234\1\342\14\20g\2008\3\304\31 \316\0q\6\2103@\234\1\342\14\20g\2008\3\304\31 \316\0q\6\2103@\234\1\342\14\20g\2008\3\304\31 \316\0q\6\2103@\234\1\342\14\20g\2008\3\304\31 \316\0q\6\2103@\234\1\342\14\20g\2008\3\304\31 \316\0q\6\2103@\234\1\342\14\20g\2008\3\304\31 \316\0q\6\2103@\234\1\342\14\20g\2008\3\304\31 \316\0q\6\2103@\234\1\342\14\20g\2008\3\304\31 \316\0q\6\2103@\234\1\342\14\20g\2008\3\304\31 \316\0q\6\2103@\234\1\342\14\20g\2008\3\304\31 \316\0q\6\2103@\234\1\342\14\20g\2008\3\304\31 \316\0q\6\2103@\234\1\342\14\20g\2008\3\304\31 \316\0q\6\2103@\234\1\342\14\20g\2008\3\304\31 \316\0q\6\2103@\234\1\342\14\20g\2008\3\304\31 \316\0q\6\2103@\234\1\342\316\231\357nG\260\347\7\221\255\203\367~A)\36\0\0\0\0IEND\256B`\202"; + + +TEST(PixelTestPatterns, SimpleRedBlueVGradient) +{ + std::auto_ptr<Orthanc::Image> texture; + + texture.reset(new Orthanc::Image( + Orthanc::PixelFormat_RGBA32, + 128, + 128, + /*forceMinimalPitch*/false)); + + Orthanc::ImageAccessor target; + texture->GetWriteableAccessor(target); + + OrthancStone::PixelTestPatterns::fillWithVGradient(target, 255, 0, 0, 0, 0, 255); + + Orthanc::PngWriter writer; +#if 0 + writer.WriteToFile("SimpleRedBlueVGradient.png", *texture); +#else + std::string contents; + writer.WriteToMemory(contents, *texture); + + ASSERT_EQ(1u, sizeof(unsigned char)); + ASSERT_EQ(400u, sizeof(bin2c_SimpleRedBlueVGradient_png)); + ASSERT_EQ(399u, contents.size()); + + char* resultPngBytes = &(contents[0]); + + int result = memcmp(resultPngBytes, bin2c_SimpleRedBlueVGradient_png, 399); + ASSERT_EQ(0, result); +#endif +} + + +/* Autogenerated from MultiGradient.png */ +static const unsigned char bin2c_MultiGradient_png[774] = "\211PNG\15\12\32\12\0\0\0\15IHDR\0\0\1\0\0\0\0\200\10\6\0\0\0\344\265\267\12\0\0\2\314IDATx\234\355\325\301\11\3030\24\5\301/\242\376+6(E$ \314\354\30\337\215\364X\2573s\6\266\316\314\226\237\365\271}\5\227\255\331{\273\357s\373\374sY\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\25\0^\13\220\2559\347\354\231Q\337\317\372\303)\276\331Ys\377\26\256.\340\3673|\261}\373\3n{\360?\240>\200\347\351\376i\5\300V\0pz\0t\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0l\5\0W\0lz\0\276!\352\302\35+U\244b\0\0\0\0IEND\256B`\202"; + +TEST(PixelTestPatterns, MultiGradient) +{ + std::auto_ptr<Orthanc::Image> texture; + + const int CELLW = 64; + const int CELLH = 64; + const int NHCELLS = 4; + const int NVCELLS = 2; + const int NCELLS = NHCELLS * NVCELLS; + + texture.reset(new Orthanc::Image( + Orthanc::PixelFormat_RGBA32, + NHCELLS * CELLW, + NVCELLS * CELLH, + /*forceMinimalPitch*/false)); + + // H:R->K, V:G->W, H:B->K + + // R G B K C M Y W + uint8_t startR[NCELLS] = {255,000,000,000,000,255,255,255}; + uint8_t startG[NCELLS] = {000,255,000,000,255,000,255,255}; + uint8_t startB[NCELLS] = {000,000,255,000,255,255,000,255}; + + // K W K W W K W K + uint8_t eeendR[NCELLS] = {000,255,000,255,255,000,255,000}; + uint8_t eeendG[NCELLS] = {000,255,000,255,255,000,255,000 }; + uint8_t eeendB[NCELLS] = {000,255,000,255,255,000,255,000 }; + + // vertical? + bool verticality[NCELLS] = { false,true,false,true,true,false,true,false }; + + for(size_t slot = 0; slot < NCELLS; ++slot) + { + int x0 = (slot % 4) * CELLW; + bool vertical = (((slot / NHCELLS) % 2) == 0) ? (slot % 2 == 0) : (slot % 2 == 1); + int y0 = static_cast<int>(slot / NHCELLS) * CELLH; + Orthanc::ImageAccessor target; + texture->GetRegion(target, x0, y0, CELLW, CELLH); + if (vertical) + OrthancStone::PixelTestPatterns::fillWithVGradient(target, startR[slot], startG[slot], startB[slot], eeendR[slot], eeendG[slot], eeendB[slot]); + else + OrthancStone::PixelTestPatterns::fillWithHGradient(target, startR[slot], startG[slot], startB[slot], eeendR[slot], eeendG[slot], eeendB[slot]); + } + + Orthanc::PngWriter writer; +#if 0 + writer.WriteToFile("MultiGradient.png", *texture); +#else + std::string contents; + writer.WriteToMemory(contents, *texture); + + ASSERT_EQ(1u, sizeof(unsigned char)); + ASSERT_EQ(774u, sizeof(bin2c_MultiGradient_png)); + ASSERT_EQ(773u, contents.size()); + + char* resultPngBytes = &(contents[0]); + + int result = memcmp(resultPngBytes, bin2c_MultiGradient_png, 773); + ASSERT_EQ(0, result); +#endif +} +